Wall clock time and date at job start Tue Mar 31 2020 06:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47072 * 299.99584 * 3 2 1 6 6 H 1.48501 * 109.47474 * 59.99284 * 3 2 1 7 7 C 1.37876 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99925 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.39675 * 119.99822 * 180.02562 * 10 9 7 12 12 C 1.38909 * 120.07682 * 359.72149 * 11 10 9 13 13 C 1.38104 * 119.92467 * 179.74611 * 12 11 10 14 14 C 1.38288 * 120.07232 * 0.55363 * 13 12 11 15 15 S 1.76208 * 119.92430 * 179.71806 * 14 13 12 16 16 O 1.42104 * 102.99561 * 23.83423 * 15 14 13 17 17 C 1.81399 * 103.00254 * 269.97890 * 15 14 13 18 18 F 1.39906 * 109.46950 * 59.99949 * 17 15 14 19 19 F 1.39897 * 109.47128 * 179.97438 * 17 15 14 20 20 F 1.39892 * 109.47061 * 300.00346 * 17 15 14 21 21 C 1.38283 * 120.15369 * 359.70146 * 14 13 12 22 22 C 1.38110 * 120.07007 * 0.02562 * 21 14 13 23 23 H 0.96998 * 120.00132 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47205 * 60.00066 * 9 7 2 25 25 H 1.09005 * 109.47240 * 300.00276 * 9 7 2 26 26 H 0.96999 * 119.99984 * 0.02562 * 10 9 7 27 27 H 1.08001 * 120.04020 * 0.02562 * 12 11 10 28 28 H 1.07996 * 119.96736 * 180.27476 * 13 12 11 29 29 H 1.08003 * 119.96586 * 180.02562 * 21 14 13 30 30 H 1.08003 * 120.03111 * 179.97438 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7376 -4.9295 0.0015 12 6 0.3723 -5.1851 0.0058 13 6 -0.0847 -6.4884 0.0002 14 6 0.8154 -7.5383 0.0018 15 16 0.2281 -9.1996 0.0021 16 8 -1.0719 -9.0791 -0.5589 17 6 0.0908 -9.5836 1.7697 18 9 -0.8075 -8.6956 2.3713 19 9 -0.3732 -10.8939 1.9275 20 9 1.3464 -9.4570 2.3733 21 6 2.1753 -7.2874 0.0028 22 6 2.6390 -5.9864 0.0027 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1568 -3.4353 0.0028 27 1 -0.3312 -4.3657 0.0090 28 1 -1.1460 -6.6879 -0.0009 29 1 2.8755 -8.1096 0.0036 30 1 3.7012 -5.7912 0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865732576.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:06 Heat of formation + Delta-G solvation = -180.459298 kcal Electronic energy + Delta-G solvation = -20543.676777 eV Core-core repulsion = 16628.780883 eV Total energy + Delta-G solvation = -3914.895894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.92694 -48.65561 -48.54446 -40.35447 -37.61208 -36.85543 -34.70463 -31.97606 -31.02869 -28.36351 -27.27946 -25.15132 -23.65192 -22.52474 -20.51511 -19.57817 -19.44697 -19.28156 -18.78209 -17.85107 -17.21326 -16.95563 -16.20978 -15.58039 -15.48600 -15.33426 -15.28097 -15.05527 -15.02216 -14.79355 -14.73777 -14.70109 -14.42643 -14.07799 -13.98716 -13.67309 -13.34402 -12.83837 -12.76696 -12.30118 -11.94936 -11.71499 -11.48585 -11.40864 -10.70580 -10.20984 -9.95228 -8.50650 -8.36752 -6.51687 -0.59881 0.49124 0.56051 1.03021 1.39129 1.39461 1.52707 2.03270 2.29088 2.47216 2.71043 2.80318 2.99681 3.06533 3.19035 3.85017 4.04825 4.43391 4.52640 4.66464 4.94845 5.00037 5.16890 5.22144 5.29673 5.37269 5.46880 5.77285 5.94910 6.30813 6.61004 6.99875 7.22124 8.75218 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.003218 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.975549 B = 8698.237056 C = 8813.056990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.264 3.736 10 N -0.716 5.716 11 C 0.254 3.746 12 C -0.246 4.246 13 C 0.000 4.000 14 C -0.565 4.565 15 S 1.497 4.503 16 O -0.834 6.834 17 C 0.093 3.907 18 F -0.216 7.216 19 F -0.182 7.182 20 F -0.164 7.164 21 C 0.041 3.959 22 C -0.223 4.223 23 H 0.269 0.731 24 H -0.006 1.006 25 H -0.008 1.008 26 H 0.407 0.593 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.201 0.799 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.478 -21.075 -0.698 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.595 4.595 8 H 0.095 0.905 9 C 0.141 3.859 10 N -0.338 5.338 11 C 0.142 3.858 12 C -0.270 4.270 13 C -0.021 4.021 14 C -0.669 4.669 15 S 1.680 4.320 16 O -0.830 6.830 17 C -0.039 4.039 18 F -0.198 7.198 19 F -0.163 7.163 20 F -0.145 7.145 21 C 0.020 3.980 22 C -0.246 4.246 23 H 0.078 0.922 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.243 0.757 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.218 0.782 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.916 -21.432 -1.253 22.882 hybrid contribution -1.560 2.934 1.523 3.656 sum 6.356 -18.498 0.270 19.562 Atomic orbital electron populations 1.70089 1.08030 1.28558 1.50029 1.25962 0.95769 1.03650 0.93845 0.85176 0.79056 0.77667 0.77756 1.17971 1.20342 1.20483 1.21605 0.94190 0.90905 1.52805 0.90454 1.18689 0.88856 0.84250 0.94130 1.45419 1.09794 1.02513 1.76047 1.18684 0.93350 0.85959 0.87761 1.20727 0.94779 0.97245 1.14281 1.20742 0.98978 0.92093 0.90303 1.26670 1.01166 1.13158 1.25900 1.70866 0.95204 0.90989 0.74965 1.93026 1.42528 1.85304 1.62173 1.33827 0.75578 0.76840 1.17684 1.93158 1.69419 1.68839 1.88398 1.93126 1.88781 1.37217 1.97216 1.93147 1.39311 1.95369 1.86699 1.21173 0.92531 0.97530 0.86717 1.21094 0.99890 0.91428 1.12228 0.92196 0.98774 0.99039 0.75740 0.88545 0.87099 0.78214 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 13.29 21.45 0.28 -53.86 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.98 41.65 29.54 68.60 2.03 43.68 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.56 -29.48 9.28 25.60 0.24 -29.24 16 8 H 0.08 3.79 7.60 -2.91 -0.02 3.77 16 9 C 0.26 13.48 4.67 85.63 0.40 13.88 16 10 N -0.72 -28.40 5.73 -343.13 -1.96 -30.37 16 11 C 0.25 8.92 6.65 38.21 0.25 9.18 16 12 C -0.25 -9.49 9.31 22.40 0.21 -9.28 16 13 C 0.00 -0.01 9.43 22.25 0.21 0.20 16 14 C -0.56 -13.35 5.54 22.29 0.12 -13.23 16 15 S 1.50 25.72 13.58 -56.49 -0.77 24.96 16 16 O -0.83 -23.92 16.89 -148.98 -2.52 -26.43 16 17 C 0.09 2.10 3.47 113.37 0.39 2.49 16 18 F -0.22 -6.72 17.32 44.97 0.78 -5.94 16 19 F -0.18 -4.05 17.36 44.97 0.78 -3.27 16 20 F -0.16 -3.27 17.32 44.97 0.78 -2.49 16 21 C 0.04 0.73 9.74 22.25 0.22 0.95 16 22 C -0.22 -5.37 9.90 22.40 0.22 -5.14 16 23 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 24 H -0.01 -0.31 7.96 -2.38 -0.02 -0.33 16 25 H -0.01 -0.47 7.94 -2.38 -0.02 -0.48 16 26 H 0.41 14.04 8.33 -92.71 -0.77 13.27 16 27 H 0.10 4.28 6.74 -2.91 -0.02 4.26 16 28 H 0.11 3.86 7.45 -2.91 -0.02 3.84 16 29 H 0.20 0.93 8.06 -2.91 -0.02 0.90 16 30 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -75.04 296.22 2.56 -72.48 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.43 Total: 10.58 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 2.73 Total: -29.33 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -1.68 Total: -84.22 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -2.52 Total: -26.43 kcal Atomic # 9 Polarization: -14.05 SS G_CDS: 2.34 Total: -11.71 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 25.72 SS G_CDS: -0.77 Total: 24.96 kcal Total: -75.04 2.56 -72.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865732576.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.977 kcal (2) G-P(sol) polarization free energy of solvation -75.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds