Wall clock time and date at job start Tue Mar 31 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47084 * 239.99797 * 3 2 1 5 5 H 1.48500 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47350 * 119.99406 * 3 2 1 7 7 C 1.37881 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99646 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.39677 * 119.99667 * 179.97438 * 10 9 7 12 12 C 1.38912 * 120.07048 * 179.97438 * 11 10 9 13 13 C 1.38099 * 119.92393 * 180.02562 * 12 11 10 14 14 C 1.38285 * 120.07607 * 0.02562 * 13 12 11 15 15 S 1.76198 * 119.92892 * 179.72258 * 14 13 12 16 16 O 1.42104 * 102.99582 * 336.14755 * 15 14 13 17 17 C 1.81397 * 103.00093 * 89.99765 * 15 14 13 18 18 F 1.39902 * 109.47240 * 60.00332 * 17 15 14 19 19 F 1.39902 * 109.47054 * 180.02562 * 17 15 14 20 20 F 1.39903 * 109.47225 * 300.00272 * 17 15 14 21 21 C 1.38288 * 120.14912 * 359.97438 * 14 13 12 22 22 C 1.38107 * 120.07582 * 0.02562 * 21 14 13 23 23 H 0.97001 * 119.99503 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47323 * 59.99566 * 9 7 2 25 25 H 1.09000 * 109.47295 * 299.99622 * 9 7 2 26 26 H 0.96993 * 119.99599 * 359.97438 * 10 9 7 27 27 H 1.08001 * 120.03609 * 0.02562 * 12 11 10 28 28 H 1.07995 * 119.96581 * 179.97438 * 13 12 11 29 29 H 1.07997 * 119.96260 * 179.97438 * 21 14 13 30 30 H 1.07996 * 120.03841 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7373 -4.9296 0.0011 12 6 2.6386 -5.9866 0.0005 13 6 2.1748 -7.2874 0.0005 14 6 0.8149 -7.5383 0.0005 15 16 0.2275 -9.1995 -0.0069 16 8 1.3143 -9.9203 -0.5712 17 6 0.0930 -9.5926 1.7589 18 9 -0.8041 -8.7078 2.3667 19 9 -0.3697 -10.9041 1.9107 20 9 1.3498 -9.4694 2.3611 21 6 -0.0851 -6.4884 0.0011 22 6 0.3719 -5.1851 0.0011 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0002 27 1 3.7008 -5.7913 0.0001 28 1 2.8749 -8.1097 -0.0003 29 1 -1.1465 -6.6878 0.0007 30 1 -0.3315 -4.3656 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865732577.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:09 Heat of formation + Delta-G solvation = -157.640924 kcal Electronic energy + Delta-G solvation = -20526.380656 eV Core-core repulsion = 16612.474240 eV Total energy + Delta-G solvation = -3913.906415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.85811 -47.55922 -47.49193 -39.10433 -36.44518 -35.33635 -32.83444 -30.78355 -29.52444 -26.68701 -26.20312 -23.46619 -22.40970 -21.08850 -19.49835 -18.50158 -18.37666 -17.86619 -17.54349 -16.46080 -15.74004 -15.44279 -14.65400 -14.46944 -14.39091 -14.11775 -14.00373 -13.94273 -13.66744 -13.64567 -13.56617 -13.43118 -13.19242 -12.76185 -12.25905 -12.20858 -12.12711 -11.08341 -11.06706 -10.83520 -10.60604 -10.29821 -9.94761 -9.60491 -9.14599 -8.80164 -8.70338 -7.07565 -6.36200 -4.42995 0.41082 1.68139 1.70220 2.04879 3.02595 3.15039 3.20541 3.21751 3.50578 4.01073 4.02883 4.14029 4.23120 4.28090 5.01607 5.02341 5.14419 5.56285 5.72182 5.92332 6.17191 6.36981 6.49509 6.60539 6.81748 7.11652 7.17136 7.43683 7.73295 7.91828 8.32883 8.65756 9.24255 10.74080 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.003204 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.077915 B = 8735.861600 C = 8956.619718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.243 3.757 10 N -0.708 5.708 11 C 0.281 3.719 12 C -0.230 4.230 13 C 0.015 3.985 14 C -0.559 4.559 15 S 1.389 4.611 16 O -0.792 6.792 17 C 0.099 3.901 18 F -0.171 7.171 19 F -0.184 7.184 20 F -0.195 7.195 21 C 0.024 3.976 22 C -0.217 4.217 23 H 0.269 0.731 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.396 0.604 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.134 0.866 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -15.683 -0.618 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.081 0.919 9 C 0.123 3.877 10 N -0.325 5.325 11 C 0.165 3.835 12 C -0.255 4.255 13 C -0.006 4.006 14 C -0.665 4.665 15 S 1.574 4.426 16 O -0.788 6.788 17 C -0.034 4.034 18 F -0.153 7.153 19 F -0.166 7.166 20 F -0.177 7.177 21 C 0.003 3.997 22 C -0.242 4.242 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.231 0.769 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.110 -16.008 -1.183 16.569 hybrid contribution 2.728 1.388 1.490 3.404 sum -1.382 -14.620 0.306 14.688 Atomic orbital electron populations 1.69914 1.06090 1.27776 1.48555 1.24914 0.94973 0.99534 0.94315 0.86435 0.79465 0.82014 0.78840 1.19983 1.20892 1.19990 1.21109 0.93368 0.90250 1.53804 0.91918 1.19317 0.88660 0.82471 0.97293 1.45947 1.10469 1.02856 1.73220 1.18389 0.93271 0.85599 0.86275 1.20605 0.98923 0.91764 1.14182 1.20635 0.93836 0.96505 0.89636 1.26060 1.00049 1.12339 1.28083 1.71443 1.11027 0.81980 0.78120 1.93103 1.56794 1.68598 1.60295 1.33520 0.75727 0.77110 1.17035 1.93142 1.67883 1.67783 1.86481 1.93114 1.88844 1.37403 1.97235 1.93173 1.41035 1.95452 1.88000 1.20495 0.98233 0.91002 0.89985 1.20866 0.94117 0.97403 1.11773 0.92172 0.95368 0.95398 0.76946 0.86076 0.86012 0.84795 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.06 13.29 55.43 0.74 -23.32 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.55 -13.89 9.28 -34.44 -0.32 -14.21 16 8 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 9 C 0.24 5.63 4.67 -5.19 -0.02 5.61 16 10 N -0.71 -13.55 5.73 -59.80 -0.34 -13.89 16 11 C 0.28 4.85 6.65 -83.79 -0.56 4.29 16 12 C -0.23 -3.60 9.90 -39.38 -0.39 -3.99 16 13 C 0.02 0.23 9.43 -39.62 -0.37 -0.15 16 14 C -0.56 -7.31 5.54 -39.55 -0.22 -7.53 16 15 S 1.39 14.19 13.58 -107.50 -1.46 12.73 16 16 O -0.79 -11.69 16.89 -35.23 -0.60 -12.29 16 17 C 0.10 1.26 3.47 101.05 0.35 1.61 16 18 F -0.17 -2.12 17.32 2.25 0.04 -2.09 16 19 F -0.18 -2.32 17.36 2.25 0.04 -2.28 16 20 F -0.19 -3.06 17.32 2.25 0.04 -3.02 16 21 C 0.02 0.30 9.74 -39.61 -0.39 -0.08 16 22 C -0.22 -3.46 9.31 -39.38 -0.37 -3.83 16 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.03 0.70 7.95 -51.93 -0.41 0.28 16 25 H 0.03 0.69 7.95 -51.93 -0.41 0.28 16 26 H 0.40 7.05 8.33 -40.82 -0.34 6.71 16 27 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.12 1.79 7.45 -52.49 -0.39 1.40 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.14 2.26 6.73 -52.49 -0.35 1.91 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -31.39 296.22 -6.77 -38.17 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -2.29 Total: 3.27 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.38 Total: -16.65 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.39 Total: -37.22 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.60 Total: -12.29 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.12 Total: -7.39 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 14.19 SS G_CDS: -1.46 Total: 12.73 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.39 -6.77 -38.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865732577.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.474 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds