Wall clock time and date at job start Tue Mar 31 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47084 * 239.99797 * 3 2 1 5 5 H 1.48500 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47350 * 119.99406 * 3 2 1 7 7 C 1.37881 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99646 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.39677 * 119.99667 * 179.97438 * 10 9 7 12 12 C 1.38912 * 120.07048 * 179.97438 * 11 10 9 13 13 C 1.38099 * 119.92393 * 180.02562 * 12 11 10 14 14 C 1.38285 * 120.07607 * 0.02562 * 13 12 11 15 15 S 1.76198 * 119.92892 * 179.72258 * 14 13 12 16 16 O 1.42104 * 102.99582 * 336.14755 * 15 14 13 17 17 C 1.81397 * 103.00093 * 89.99765 * 15 14 13 18 18 F 1.39902 * 109.47240 * 60.00332 * 17 15 14 19 19 F 1.39902 * 109.47054 * 180.02562 * 17 15 14 20 20 F 1.39903 * 109.47225 * 300.00272 * 17 15 14 21 21 C 1.38288 * 120.14912 * 359.97438 * 14 13 12 22 22 C 1.38107 * 120.07582 * 0.02562 * 21 14 13 23 23 H 0.97001 * 119.99503 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47323 * 59.99566 * 9 7 2 25 25 H 1.09000 * 109.47295 * 299.99622 * 9 7 2 26 26 H 0.96993 * 119.99599 * 359.97438 * 10 9 7 27 27 H 1.08001 * 120.03609 * 0.02562 * 12 11 10 28 28 H 1.07995 * 119.96581 * 179.97438 * 13 12 11 29 29 H 1.07997 * 119.96260 * 179.97438 * 21 14 13 30 30 H 1.07996 * 120.03841 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7373 -4.9296 0.0011 12 6 2.6386 -5.9866 0.0005 13 6 2.1748 -7.2874 0.0005 14 6 0.8149 -7.5383 0.0005 15 16 0.2275 -9.1995 -0.0069 16 8 1.3143 -9.9203 -0.5712 17 6 0.0930 -9.5926 1.7589 18 9 -0.8041 -8.7078 2.3667 19 9 -0.3697 -10.9041 1.9107 20 9 1.3498 -9.4694 2.3611 21 6 -0.0851 -6.4884 0.0011 22 6 0.3719 -5.1851 0.0011 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5570 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 3.1566 -3.4355 0.0002 27 1 3.7008 -5.7913 0.0001 28 1 2.8749 -8.1097 -0.0003 29 1 -1.1465 -6.6878 0.0007 30 1 -0.3315 -4.3656 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865732577.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:08 Heat of formation + Delta-G solvation = -178.837776 kcal Electronic energy + Delta-G solvation = -20527.299820 eV Core-core repulsion = 16612.474240 eV Total energy + Delta-G solvation = -3914.825580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.92060 -48.64294 -48.54615 -40.34673 -37.59316 -36.82808 -34.66946 -31.97968 -30.99320 -28.32612 -27.27281 -25.10205 -23.65690 -22.49275 -20.51764 -19.56660 -19.45035 -19.23012 -18.81988 -17.83002 -17.15459 -16.95620 -16.16812 -15.60722 -15.46807 -15.32820 -15.24419 -15.04101 -15.01567 -14.82508 -14.73334 -14.70253 -14.34546 -14.04448 -14.00078 -13.64544 -13.29183 -12.82600 -12.77292 -12.29416 -11.94029 -11.70495 -11.48927 -11.37924 -10.64690 -10.18133 -9.95509 -8.49307 -8.33029 -6.46427 -0.59715 0.49526 0.55335 1.03368 1.41478 1.42631 1.51008 2.02661 2.31425 2.47779 2.71511 2.80372 3.03067 3.07088 3.19409 3.86839 4.03881 4.42614 4.53359 4.66241 4.95349 5.05175 5.18480 5.26166 5.29584 5.40140 5.49394 5.81208 5.94970 6.34279 6.64214 6.96004 7.25818 8.77933 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.037723 B = 0.003204 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.077915 B = 8735.861600 C = 8956.619718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.564 4.564 8 H 0.068 0.932 9 C 0.265 3.735 10 N -0.720 5.720 11 C 0.255 3.745 12 C -0.232 4.232 13 C 0.001 3.999 14 C -0.565 4.565 15 S 1.491 4.509 16 O -0.828 6.828 17 C 0.093 3.907 18 F -0.167 7.167 19 F -0.182 7.182 20 F -0.213 7.213 21 C 0.040 3.960 22 C -0.239 4.239 23 H 0.270 0.730 24 H 0.006 0.994 25 H 0.003 0.997 26 H 0.400 0.600 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.187 0.813 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -16.866 -0.730 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.602 4.602 8 H 0.086 0.914 9 C 0.143 3.857 10 N -0.340 5.340 11 C 0.143 3.857 12 C -0.256 4.256 13 C -0.020 4.020 14 C -0.669 4.669 15 S 1.673 4.327 16 O -0.824 6.824 17 C -0.039 4.039 18 F -0.149 7.149 19 F -0.163 7.163 20 F -0.195 7.195 21 C 0.020 3.980 22 C -0.263 4.263 23 H 0.079 0.921 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.235 0.765 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.204 0.796 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.417 -17.229 -1.290 17.833 hybrid contribution 2.749 1.505 1.533 3.489 sum -1.668 -15.724 0.244 15.814 Atomic orbital electron populations 1.70029 1.07560 1.28647 1.49593 1.25802 0.95791 1.03046 0.93890 0.85392 0.78193 0.77724 0.79071 1.19254 1.20576 1.19403 1.21531 0.93933 0.91393 1.53342 0.91363 1.18757 0.88653 0.83368 0.94969 1.45543 1.09810 1.02764 1.75930 1.18642 0.94306 0.85018 0.87695 1.20729 0.99388 0.91703 1.13797 1.20835 0.95007 0.96186 0.89940 1.26631 0.99600 1.14710 1.25994 1.71147 1.07927 0.78504 0.75077 1.93008 1.58292 1.69355 1.61753 1.33838 0.75138 0.77334 1.17585 1.93158 1.67575 1.67599 1.86545 1.93126 1.88703 1.37262 1.97253 1.93147 1.42433 1.95570 1.88370 1.21019 1.00830 0.89174 0.87025 1.21025 0.93519 0.98777 1.12957 0.92066 0.97651 0.97932 0.76526 0.85062 0.85716 0.79625 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.02 13.29 21.45 0.28 -50.74 16 2 C 0.02 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.97 40.93 29.54 68.60 2.03 42.96 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.56 -29.28 9.28 25.60 0.24 -29.04 16 8 H 0.07 3.37 7.60 -2.91 -0.02 3.35 16 9 C 0.27 12.82 4.67 85.63 0.40 13.22 16 10 N -0.72 -28.56 5.73 -343.11 -1.96 -30.53 16 11 C 0.26 8.96 6.65 38.21 0.25 9.22 16 12 C -0.23 -7.20 9.90 22.40 0.22 -6.98 16 13 C 0.00 0.03 9.43 22.25 0.21 0.24 16 14 C -0.57 -13.38 5.54 22.29 0.12 -13.25 16 15 S 1.49 25.65 13.58 -56.49 -0.77 24.88 16 16 O -0.83 -22.15 16.89 -148.98 -2.52 -24.67 16 17 C 0.09 2.11 3.47 113.37 0.39 2.50 16 18 F -0.17 -3.63 17.32 44.97 0.78 -2.85 16 19 F -0.18 -4.06 17.36 44.97 0.78 -3.28 16 20 F -0.21 -6.27 17.32 44.97 0.78 -5.49 16 21 C 0.04 0.91 9.74 22.25 0.22 1.12 16 22 C -0.24 -7.58 9.31 22.40 0.21 -7.37 16 23 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 24 H 0.01 0.29 7.95 -2.39 -0.02 0.27 16 25 H 0.00 0.15 7.95 -2.39 -0.02 0.13 16 26 H 0.40 14.72 8.33 -92.71 -0.77 13.94 16 27 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.12 3.49 7.45 -2.91 -0.02 3.47 16 29 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.12 4.22 6.73 -2.91 -0.02 4.20 16 Total: -1.00 -68.22 296.22 2.56 -65.66 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.43 Total: 13.12 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 2.73 Total: -29.06 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.68 Total: -81.27 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -2.52 Total: -24.67 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 2.34 Total: -11.62 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: 25.65 SS G_CDS: -0.77 Total: 24.88 kcal Total: -68.22 2.56 -65.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865732577.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.178 kcal (2) G-P(sol) polarization free energy of solvation -68.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds