Wall clock time and date at job start Tue Mar 31 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00183 * 2 1 4 4 H 1.48501 * 109.47222 * 240.00192 * 3 2 1 5 5 H 1.48491 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46828 * 120.00301 * 3 2 1 7 7 C 1.37884 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47416 * 180.02562 * 10 9 7 12 12 N 1.31130 * 126.55135 * 89.99389 * 11 10 9 13 13 C 1.34487 * 105.61582 * 180.02562 * 12 11 10 14 14 C 1.50700 * 126.29101 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46747 * 90.00233 * 14 13 12 16 16 C 1.38714 * 120.39847 * 90.00614 * 15 14 13 17 17 C 1.38566 * 118.43372 * 179.97438 * 16 15 14 18 18 C 1.38401 * 119.15292 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.63508 * 179.97438 * 18 17 16 20 20 N 1.31947 * 120.72693 * 0.26334 * 18 17 16 21 21 C 1.31909 * 121.70546 * 359.46963 * 20 18 17 22 22 N 1.29953 * 107.42416 * 0.24911 * 13 12 11 23 23 O 1.21293 * 110.24670 * 359.57343 * 22 13 12 24 24 H 0.97003 * 119.99941 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46862 * 60.00430 * 9 7 2 26 26 H 1.08996 * 109.47215 * 300.00476 * 9 7 2 27 27 H 1.09000 * 109.47513 * 59.99830 * 10 9 7 28 28 H 1.09004 * 109.47102 * 300.00256 * 10 9 7 29 29 H 1.09000 * 109.46909 * 330.00942 * 14 13 12 30 30 H 1.08993 * 109.47944 * 210.00684 * 14 13 12 31 31 H 1.07996 * 120.78575 * 359.95512 * 16 15 14 32 32 H 1.08008 * 120.42646 * 179.97438 * 17 16 15 33 33 H 1.08000 * 119.60687 * 180.27392 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 7 1.1014 -5.6432 -1.0549 13 6 0.4728 -6.7309 -0.5749 14 6 -0.1612 -7.8276 -1.3912 15 6 0.8576 -8.9042 -1.6633 16 6 1.0078 -9.9668 -0.7845 17 6 1.9565 -10.9341 -1.0748 18 6 2.7171 -10.8089 -2.2243 19 17 3.9097 -12.0132 -2.5998 20 7 2.5495 -9.7814 -3.0350 21 6 1.6523 -8.8456 -2.7917 22 7 0.5073 -6.6596 0.7222 23 8 1.0928 -5.6565 1.0720 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6043 -0.8905 29 1 -0.5176 -7.4174 -2.3361 30 1 -1.0002 -8.2523 -0.8400 31 1 0.3998 -10.0384 0.1053 32 1 2.1007 -11.7750 -0.4125 33 1 1.5408 -8.0214 -3.4807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867164144.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:10 Heat of formation + Delta-G solvation = 79.059773 kcal Electronic energy + Delta-G solvation = -19522.070482 eV Core-core repulsion = 16190.533964 eV Total energy + Delta-G solvation = -3331.536518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.23269 -40.63660 -37.05574 -36.02713 -34.87817 -33.58615 -32.60150 -32.05633 -30.25827 -28.02230 -25.90375 -24.17643 -23.67901 -22.86487 -21.80349 -20.45735 -17.88231 -17.66794 -17.22098 -16.95442 -16.39154 -15.65025 -15.09813 -14.59660 -14.40236 -14.26304 -14.09435 -13.61743 -13.26792 -12.93805 -12.50234 -12.31621 -12.03555 -11.92510 -11.62102 -11.61242 -11.16114 -11.00625 -10.80171 -10.69110 -10.30765 -10.16919 -10.11390 -9.92206 -9.39408 -9.27055 -9.21001 -8.48015 -6.12646 -4.17563 0.48693 0.79753 1.46306 1.51429 2.50359 3.19406 3.27107 3.28399 3.33373 3.35828 3.89984 4.09726 4.19945 4.34670 4.37240 4.53071 4.54523 4.71437 5.08228 5.23099 5.24087 5.32670 5.48925 5.56348 5.77298 5.90565 6.04224 6.12749 6.18297 6.32076 6.56968 7.35581 7.44359 7.51335 7.82517 8.17831 8.47378 8.87429 9.47603 10.98560 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.002663 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.640431 B =10513.520206 C =10934.139053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.030 4.030 11 C 0.219 3.781 12 N -0.493 5.493 13 C 0.163 3.837 14 C 0.020 3.980 15 C -0.131 4.131 16 C -0.049 4.049 17 C -0.155 4.155 18 C 0.173 3.827 19 Cl -0.034 7.034 20 N -0.477 5.477 21 C 0.139 3.861 22 N -0.395 5.395 23 O 0.070 5.930 24 H 0.264 0.736 25 H 0.027 0.973 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 -21.608 -2.384 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.069 4.069 11 C 0.000 4.000 12 N -0.227 5.227 13 C -0.110 4.110 14 C -0.019 4.019 15 C -0.135 4.135 16 C -0.075 4.075 17 C -0.176 4.176 18 C 0.009 3.991 19 Cl -0.005 7.005 20 N -0.187 5.187 21 C -0.018 4.018 22 N -0.105 5.105 23 O 0.013 5.987 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.819 -22.229 -3.080 22.515 hybrid contribution 0.073 0.912 0.765 1.193 sum 1.892 -21.317 -2.314 21.525 Atomic orbital electron populations 1.69950 1.06169 1.27139 1.49722 1.25007 0.94872 0.99450 0.94853 0.86565 0.79518 0.82641 0.78766 1.20050 1.21238 1.20063 1.21028 0.93143 0.90205 1.52175 0.92068 1.19150 0.93537 0.89777 0.98475 1.20788 0.98014 0.83610 1.04472 1.29643 0.93950 0.96883 0.79549 1.71912 1.16586 1.05038 1.29115 1.25394 1.00431 0.96523 0.88620 1.18701 0.94776 0.88376 1.00075 1.20747 0.99546 0.96632 0.96527 1.21574 0.95787 0.91825 0.98359 1.21832 0.97002 1.01539 0.97216 1.21715 0.93024 0.91871 0.92467 1.98409 1.55370 1.51967 1.94770 1.67083 1.18924 1.01654 1.31026 1.22730 0.88705 0.95153 0.95244 1.74527 1.16105 1.04493 1.15399 1.85271 1.52053 1.25104 1.36272 0.92655 0.95488 0.95809 0.89053 0.88134 0.87012 0.87766 0.83465 0.83541 0.81141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -13.85 9.11 -34.44 -0.31 -14.16 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.69 4.95 -27.89 -0.14 0.55 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.22 3.97 7.77 -13.06 -0.10 3.87 16 12 N -0.49 -8.71 11.55 -9.87 -0.11 -8.82 16 13 C 0.16 2.50 7.45 -156.37 -1.17 1.34 16 14 C 0.02 0.21 6.00 -29.03 -0.17 0.04 16 15 C -0.13 -1.36 5.13 -104.48 -0.54 -1.89 16 16 C -0.05 -0.45 9.86 -39.28 -0.39 -0.84 16 17 C -0.16 -1.41 9.88 -39.40 -0.39 -1.80 16 18 C 0.17 1.92 7.27 -17.44 -0.13 1.80 16 19 Cl -0.03 -0.33 29.11 -51.86 -1.51 -1.84 16 20 N -0.48 -5.95 10.34 -10.36 -0.11 -6.06 16 21 C 0.14 1.55 10.86 -17.55 -0.19 1.36 16 22 N -0.39 -6.58 12.16 30.89 0.38 -6.21 16 23 O 0.07 1.24 11.31 18.12 0.20 1.44 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 29 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 30 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 317.11 15.07 4.78 4.78 Total: -1.00 -30.63 317.11 -7.78 -38.41 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.34 Total: -3.40 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.78 Total: -8.90 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.89 Total: -46.11 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.20 Total: 1.44 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.63 -7.78 -38.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867164144.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.466 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds