Wall clock time and date at job start Tue Mar 31 2020 07:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00183 * 2 1 4 4 H 1.48501 * 109.47222 * 240.00192 * 3 2 1 5 5 H 1.48491 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46828 * 120.00301 * 3 2 1 7 7 C 1.37884 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47416 * 180.02562 * 10 9 7 12 12 N 1.31130 * 126.55135 * 89.99389 * 11 10 9 13 13 C 1.34487 * 105.61582 * 180.02562 * 12 11 10 14 14 C 1.50700 * 126.29101 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46747 * 90.00233 * 14 13 12 16 16 C 1.38714 * 120.39847 * 90.00614 * 15 14 13 17 17 C 1.38566 * 118.43372 * 179.97438 * 16 15 14 18 18 C 1.38401 * 119.15292 * 359.97438 * 17 16 15 19 19 Cl 1.73599 * 119.63508 * 179.97438 * 18 17 16 20 20 N 1.31947 * 120.72693 * 0.26334 * 18 17 16 21 21 C 1.31909 * 121.70546 * 359.46963 * 20 18 17 22 22 N 1.29953 * 107.42416 * 0.24911 * 13 12 11 23 23 O 1.21293 * 110.24670 * 359.57343 * 22 13 12 24 24 H 0.97003 * 119.99941 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46862 * 60.00430 * 9 7 2 26 26 H 1.08996 * 109.47215 * 300.00476 * 9 7 2 27 27 H 1.09000 * 109.47513 * 59.99830 * 10 9 7 28 28 H 1.09004 * 109.47102 * 300.00256 * 10 9 7 29 29 H 1.09000 * 109.46909 * 330.00942 * 14 13 12 30 30 H 1.08993 * 109.47944 * 210.00684 * 14 13 12 31 31 H 1.07996 * 120.78575 * 359.95512 * 16 15 14 32 32 H 1.08008 * 120.42646 * 179.97438 * 17 16 15 33 33 H 1.08000 * 119.60687 * 180.27392 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4916 -4.9672 -0.0012 12 7 1.1014 -5.6432 -1.0549 13 6 0.4728 -6.7309 -0.5749 14 6 -0.1612 -7.8276 -1.3912 15 6 0.8576 -8.9042 -1.6633 16 6 1.0078 -9.9668 -0.7845 17 6 1.9565 -10.9341 -1.0748 18 6 2.7171 -10.8089 -2.2243 19 17 3.9097 -12.0132 -2.5998 20 7 2.5495 -9.7814 -3.0350 21 6 1.6523 -8.8456 -2.7917 22 7 0.5073 -6.6596 0.7222 23 8 1.0928 -5.6565 1.0720 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6043 -0.8905 29 1 -0.5176 -7.4174 -2.3361 30 1 -1.0002 -8.2523 -0.8400 31 1 0.3998 -10.0384 0.1053 32 1 2.1007 -11.7750 -0.4125 33 1 1.5408 -8.0214 -3.4807 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867164144.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:09 Heat of formation + Delta-G solvation = 59.957025 kcal Electronic energy + Delta-G solvation = -19522.898839 eV Core-core repulsion = 16190.533964 eV Total energy + Delta-G solvation = -3332.364875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.54649 -41.41780 -37.85609 -37.23465 -36.43057 -34.91839 -33.94777 -33.03598 -31.83899 -28.94344 -27.73254 -25.04656 -24.81286 -24.21124 -23.17486 -21.82283 -19.16125 -18.64059 -18.50961 -18.22127 -17.79615 -16.51522 -16.40908 -16.09019 -15.72650 -15.32125 -15.06672 -14.76643 -14.34340 -14.31637 -13.87000 -13.49715 -13.35221 -13.11107 -12.77875 -12.75240 -12.68642 -12.39153 -12.36758 -12.07866 -11.89725 -11.82241 -11.35497 -11.06544 -10.84657 -10.67186 -10.54895 -10.02148 -8.19695 -6.31379 -0.31031 0.05035 0.14346 0.70412 1.22381 1.46910 1.49169 1.56727 1.86340 2.36695 2.44818 2.80677 3.06658 3.15852 3.36231 3.56212 3.73663 3.82707 3.92778 4.04845 4.37510 4.44759 4.52926 4.54738 4.64318 4.75620 4.80413 4.93159 4.98011 5.06248 5.38159 5.44472 5.54914 5.78494 6.14469 6.56399 6.84108 7.13095 7.38732 8.92426 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.030340 B = 0.002663 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.640431 B =10513.520206 C =10934.139053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.035 3.965 10 C -0.016 4.016 11 C 0.209 3.791 12 N -0.507 5.507 13 C 0.172 3.828 14 C 0.022 3.978 15 C -0.134 4.134 16 C -0.047 4.047 17 C -0.149 4.149 18 C 0.157 3.843 19 Cl -0.031 7.031 20 N -0.505 5.505 21 C 0.127 3.873 22 N -0.402 5.402 23 O 0.057 5.943 24 H 0.264 0.736 25 H -0.004 1.004 26 H -0.002 1.002 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.171 0.829 32 H 0.174 0.826 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.437 -22.407 -2.037 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.003 4.003 10 C -0.054 4.054 11 C -0.010 4.010 12 N -0.241 5.241 13 C -0.101 4.101 14 C -0.017 4.017 15 C -0.138 4.138 16 C -0.072 4.072 17 C -0.170 4.170 18 C -0.007 4.007 19 Cl -0.003 7.003 20 N -0.216 5.216 21 C -0.030 4.030 22 N -0.115 5.115 23 O 0.004 5.996 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.533 -23.033 -2.718 23.330 hybrid contribution -0.176 1.054 0.637 1.244 sum 2.358 -21.979 -2.081 22.203 Atomic orbital electron populations 1.70096 1.08001 1.27999 1.51317 1.25969 0.95663 1.03484 0.94566 0.85461 0.78158 0.77827 0.79387 1.19017 1.21469 1.18826 1.21543 0.94125 0.91097 1.51014 0.90526 1.18926 0.93925 0.91728 0.95708 1.20500 0.96803 0.82007 1.06132 1.29457 0.94425 0.97074 0.80040 1.71932 1.16937 1.05938 1.29294 1.26179 0.98940 0.96491 0.88500 1.18962 0.95164 0.87168 1.00425 1.20723 0.99442 0.96981 0.96605 1.21899 0.95614 0.91100 0.98622 1.22129 0.96040 1.02146 0.96652 1.22007 0.93638 0.91886 0.93154 1.98404 1.55340 1.51692 1.94836 1.67037 1.19868 1.02553 1.32158 1.22882 0.88886 0.95253 0.95967 1.74519 1.16569 1.04311 1.16114 1.85257 1.52463 1.25572 1.36340 0.92744 0.98580 0.98356 0.86908 0.87002 0.85591 0.85203 0.81137 0.80900 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 42.04 29.54 68.60 2.03 44.06 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.54 -28.27 9.11 25.60 0.23 -28.04 16 8 H 0.08 3.69 7.74 -2.91 -0.02 3.66 16 9 C 0.04 1.73 4.95 29.85 0.15 1.88 16 10 C -0.02 -0.57 5.78 29.85 0.17 -0.40 16 11 C 0.21 7.52 7.77 88.38 0.69 8.21 16 12 N -0.51 -17.54 11.55 -303.23 -3.50 -21.04 16 13 C 0.17 5.02 7.45 138.46 1.03 6.05 16 14 C 0.02 0.41 6.00 29.10 0.17 0.58 16 15 C -0.13 -2.51 5.13 -19.77 -0.10 -2.61 16 16 C -0.05 -0.73 9.86 22.46 0.22 -0.51 16 17 C -0.15 -2.37 9.88 22.39 0.22 -2.15 16 18 C 0.16 3.28 7.27 84.71 0.62 3.90 16 19 Cl -0.03 -0.59 29.11 -2.72 -0.08 -0.67 16 20 N -0.51 -12.26 10.34 -186.69 -1.93 -14.20 16 21 C 0.13 2.72 10.86 84.66 0.92 3.64 16 22 N -0.40 -12.92 12.16 -60.35 -0.73 -13.65 16 23 O 0.06 1.99 11.31 74.89 0.85 2.84 16 24 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 28 H 0.11 3.84 8.14 -2.38 -0.02 3.82 16 29 H 0.13 2.02 8.09 -2.39 -0.02 2.00 16 30 H 0.13 1.79 8.09 -2.39 -0.02 1.77 16 31 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -66.23 317.11 2.84 -63.39 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.14 Total: 2.92 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 4.79 Total: -8.91 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -5.88 Total: -103.63 kcal Atomic # 8 Polarization: 1.99 SS G_CDS: 0.85 Total: 2.84 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -66.23 2.84 -63.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867164144.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.347 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds