Wall clock time and date at job start Tue Mar 31 2020 07:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27572 * 126.41818 * 2 1 4 4 N 1.39145 * 113.16548 * 180.02562 * 3 2 1 5 5 C 1.39525 * 124.44216 * 179.97438 * 4 3 2 6 6 C 1.39003 * 119.68173 * 0.02795 * 5 4 3 7 7 C 1.38410 * 119.12816 * 179.74363 * 6 5 4 8 8 C 1.38766 * 118.51085 * 0.25521 * 7 6 5 9 9 C 1.38268 * 119.29945 * 359.97438 * 8 7 6 10 10 Cl 1.73600 * 119.59631 * 179.97438 * 9 8 7 11 11 N 1.32006 * 120.81485 * 359.97438 * 9 8 7 12 12 C 1.34957 * 111.12386 * 0.26591 * 4 3 2 13 13 O 1.21284 * 127.50083 * 179.73080 * 12 4 3 14 14 C 1.51442 * 126.41734 * 180.02562 * 2 1 3 15 15 H 1.09005 * 110.60795 * 298.65296 * 14 2 1 16 16 C 1.53002 * 110.60584 * 61.46238 * 14 2 1 17 17 C 1.50703 * 109.47007 * 185.00081 * 16 14 2 18 18 H 1.07999 * 120.00128 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99530 * 180.02562 * 17 16 14 20 20 N 1.31515 * 120.00708 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99742 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46890 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47091 * 120.00011 * 21 19 17 24 24 H 1.48500 * 109.47083 * 239.99859 * 21 19 17 25 25 H 1.08997 * 109.47034 * 359.97232 * 1 2 3 26 26 H 1.08997 * 109.47292 * 119.97461 * 1 2 3 27 27 H 1.09000 * 109.47273 * 239.97692 * 1 2 3 28 28 H 1.08002 * 120.43906 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.74537 * 180.22994 * 7 6 5 30 30 H 1.08003 * 120.35153 * 180.02562 * 8 7 6 31 31 H 1.09001 * 109.47442 * 304.99932 * 16 14 2 32 32 H 1.09000 * 109.47019 * 64.99931 * 16 14 2 33 33 H 0.97001 * 120.00283 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7076 -0.0006 5 6 4.6507 1.6467 -0.0012 6 6 4.3469 3.0031 -0.0007 7 6 5.3795 3.9248 0.0041 8 6 6.6856 3.4562 0.0028 9 6 6.9153 2.0927 -0.0027 10 17 8.5463 1.4980 -0.0050 11 7 5.9097 1.2376 -0.0061 12 6 3.8036 -0.6292 -0.0068 13 8 4.8578 -1.2288 -0.0135 14 6 2.4061 -1.2187 -0.0005 15 1 2.2402 -1.8183 0.8945 16 6 2.1752 -2.0576 -1.2591 17 6 2.9899 -3.3227 -1.1759 18 1 3.6106 -3.5095 -0.3120 19 6 2.9435 -4.2411 -2.2031 20 7 2.1889 -4.0131 -3.2558 21 14 3.9539 -5.8090 -2.1004 22 1 4.7136 -5.8256 -0.8246 23 1 3.0491 -6.9854 -2.1538 24 1 4.9027 -5.8622 -3.2416 25 1 -0.3633 1.0276 0.0005 26 1 -0.3634 -0.5134 -0.8902 27 1 -0.3634 -0.5142 0.8898 28 1 3.3187 3.3336 0.0006 29 1 5.1733 4.9850 0.0083 30 1 7.5140 4.1491 0.0068 31 1 1.1179 -2.3108 -1.3381 32 1 2.4787 -1.4870 -2.1368 33 1 2.1561 -4.6594 -3.9783 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871950740.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:08 Heat of formation + Delta-G solvation = 34.516295 kcal Electronic energy + Delta-G solvation = -20610.888469 eV Core-core repulsion = 17277.420401 eV Total energy + Delta-G solvation = -3333.468068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.79906 -41.04652 -38.65710 -37.77182 -36.05260 -34.81401 -33.67720 -32.34019 -31.56275 -29.08536 -28.04880 -25.45093 -24.58932 -23.82013 -21.70786 -20.95842 -19.39740 -18.44910 -17.85960 -17.47798 -17.03107 -16.63547 -16.41803 -16.13739 -15.86455 -15.39155 -14.71650 -14.51373 -14.34428 -14.26170 -13.65772 -13.52254 -13.37038 -13.21764 -13.11272 -12.87699 -12.65054 -12.55754 -12.40869 -12.18285 -11.65114 -11.50619 -11.18378 -10.97722 -10.69594 -10.66913 -10.39395 -9.28884 -8.27368 -6.34471 -0.27512 0.05862 0.54829 0.55664 1.07686 1.32446 1.35765 1.48593 1.53005 2.36595 2.60262 2.76131 3.07921 3.10413 3.45470 3.64882 3.86027 3.91514 4.10318 4.21859 4.31742 4.52678 4.63285 4.83033 4.90392 4.98318 5.03434 5.10961 5.27857 5.30377 5.42596 5.55663 5.70411 6.08974 6.23473 6.62631 6.75573 6.87082 7.33555 8.83932 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.005269 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.503155 B = 5312.329288 C = 6904.319469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.146 3.854 3 N -0.254 5.254 4 N -0.431 5.431 5 C 0.368 3.632 6 C -0.173 4.173 7 C -0.019 4.019 8 C -0.166 4.166 9 C 0.182 3.818 10 Cl -0.036 7.036 11 N -0.546 5.546 12 C 0.491 3.509 13 O -0.485 6.485 14 C -0.134 4.134 15 H 0.142 0.858 16 C 0.067 3.933 17 C -0.533 4.533 18 H 0.049 0.951 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.952 3.048 22 H -0.276 1.276 23 H -0.263 1.263 24 H -0.285 1.285 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.170 0.830 29 H 0.207 0.793 30 H 0.187 0.813 31 H 0.051 0.949 32 H -0.017 1.017 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 19.222 8.143 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 N -0.061 5.061 4 N -0.243 5.243 5 C 0.141 3.859 6 C -0.195 4.195 7 C -0.045 4.045 8 C -0.188 4.188 9 C 0.017 3.983 10 Cl -0.008 7.008 11 N -0.263 5.263 12 C 0.279 3.721 13 O -0.353 6.353 14 C -0.158 4.158 15 H 0.159 0.841 16 C 0.028 3.972 17 C -0.571 4.571 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.564 5.564 21 Si 0.777 3.223 22 H -0.201 1.201 23 H -0.188 1.188 24 H -0.211 1.211 25 H 0.127 0.873 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.188 0.812 29 H 0.224 0.776 30 H 0.204 0.796 31 H 0.069 0.931 32 H 0.001 0.999 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.266 18.844 7.983 20.467 hybrid contribution 1.128 -1.621 -0.349 2.005 sum 1.394 17.223 7.634 18.890 Atomic orbital electron populations 1.20720 0.80151 1.06417 1.06057 1.26367 0.99426 0.88952 0.89827 1.74671 0.85359 1.26328 1.19712 1.47305 1.03788 1.05253 1.67937 1.18047 0.83776 0.87941 0.96158 1.22001 1.03950 0.89275 1.04313 1.22064 0.89312 1.02359 0.90749 1.22225 1.00712 0.92420 1.03448 1.21688 0.86706 0.90101 0.99764 1.98393 1.15552 1.90353 1.96500 1.66027 0.99359 1.42409 1.18508 1.22072 0.92548 0.82568 0.74903 1.90714 1.32757 1.66217 1.45621 1.22038 0.90331 0.97851 1.05580 0.84102 1.18664 0.98445 0.92169 0.87875 1.21461 1.26536 1.04320 1.04746 0.93262 1.25683 0.96458 1.01542 0.94916 1.70021 1.40540 1.37257 1.08555 0.85596 0.78861 0.80022 0.77800 1.20052 1.18780 1.21084 0.87281 0.88234 0.86224 0.81232 0.77610 0.79622 0.93087 0.99851 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.47 71.24 0.75 -0.62 16 2 C 0.15 4.45 6.93 46.83 0.32 4.77 16 3 N -0.25 -8.33 11.15 -40.84 -0.46 -8.78 16 4 N -0.43 -17.49 3.71 -307.12 -1.14 -18.63 16 5 C 0.37 13.60 7.50 132.86 1.00 14.60 16 6 C -0.17 -4.29 9.65 22.49 0.22 -4.07 16 7 C -0.02 -0.32 10.16 22.44 0.23 -0.09 16 8 C -0.17 -3.30 9.87 22.40 0.22 -3.08 16 9 C 0.18 5.65 7.27 84.67 0.62 6.27 16 10 Cl -0.04 -1.07 29.10 -2.72 -0.08 -1.15 16 11 N -0.55 -22.08 8.88 -183.81 -1.63 -23.71 16 12 C 0.49 23.61 7.51 87.94 0.66 24.27 16 13 O -0.49 -27.61 15.98 -3.04 -0.05 -27.65 16 14 C -0.13 -5.53 2.98 -11.74 -0.03 -5.57 16 15 H 0.14 5.38 8.14 -2.38 -0.02 5.36 16 16 C 0.07 3.36 4.48 29.85 0.13 3.49 16 17 C -0.53 -30.97 8.43 25.60 0.22 -30.76 16 18 H 0.05 2.96 7.43 -2.91 -0.02 2.94 16 19 C 0.01 0.74 5.46 84.65 0.46 1.20 16 20 N -0.92 -55.21 13.29 21.45 0.28 -54.93 16 21 Si 0.95 46.71 29.54 68.60 2.03 48.74 16 22 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 25 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.10 1.89 8.04 -2.39 -0.02 1.87 16 27 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.17 3.52 7.59 -2.91 -0.02 3.50 16 29 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 30 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.05 2.44 8.01 -2.39 -0.02 2.43 16 32 H -0.02 -0.97 8.12 -2.39 -0.02 -0.99 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -82.63 311.73 4.89 -77.74 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: 1.14 Total: -2.06 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.79 Total: 10.43 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -2.94 Total: -106.04 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.05 Total: -27.65 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -82.63 4.89 -77.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871950740.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.257 kcal (2) G-P(sol) polarization free energy of solvation -82.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds