Wall clock time and date at job start Tue Mar 31 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.27567 * 126.41489 * 2 1 4 4 N 1.39150 * 113.16570 * 180.18544 * 3 2 1 5 5 C 1.39526 * 124.44363 * 179.77169 * 4 3 2 6 6 C 1.38994 * 119.68335 * 359.71919 * 5 4 3 7 7 C 1.38406 * 119.12982 * 179.97438 * 6 5 4 8 8 C 1.38775 * 118.51022 * 0.02847 * 7 6 5 9 9 C 1.38264 * 119.29660 * 359.97438 * 8 7 6 10 10 Cl 1.73603 * 119.58982 * 180.02562 * 9 8 7 11 11 N 1.32005 * 120.81455 * 359.97438 * 9 8 7 12 12 C 1.34957 * 111.12125 * 359.50528 * 4 3 2 13 13 O 1.21281 * 127.50544 * 180.28787 * 12 4 3 14 14 C 1.51436 * 126.41694 * 179.66353 * 2 1 3 15 15 H 1.09006 * 110.60845 * 61.48960 * 14 2 1 16 16 C 1.53000 * 110.61084 * 298.51847 * 14 2 1 17 17 C 1.50704 * 109.47329 * 179.42161 * 16 14 2 18 18 H 1.08000 * 119.99455 * 359.97438 * 17 16 14 19 19 C 1.37876 * 119.99790 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99590 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47374 * 90.00144 * 21 19 17 23 23 H 1.48508 * 109.47055 * 209.99891 * 21 19 17 24 24 H 1.48500 * 109.47480 * 329.99906 * 21 19 17 25 25 H 1.09003 * 109.46975 * 270.33072 * 1 2 3 26 26 H 1.08991 * 109.47182 * 30.34063 * 1 2 3 27 27 H 1.09010 * 109.46763 * 150.33763 * 1 2 3 28 28 H 1.08003 * 120.43749 * 0.02562 * 6 5 4 29 29 H 1.08003 * 120.74255 * 180.29007 * 7 6 5 30 30 H 1.08002 * 120.34815 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.46825 * 299.41804 * 16 14 2 32 32 H 1.08995 * 109.47178 * 59.42013 * 16 14 2 33 33 H 0.96996 * 119.99806 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7077 -0.0041 5 6 4.6506 1.6468 -0.0096 6 6 4.3468 3.0031 -0.0171 7 6 5.3793 3.9248 -0.0219 8 6 6.6856 3.4562 -0.0197 9 6 6.9152 2.0928 -0.0122 10 17 8.5463 1.4983 -0.0087 11 7 5.9096 1.2377 -0.0067 12 6 3.8037 -0.6292 0.0037 13 8 4.8579 -1.2288 0.0076 14 6 2.4061 -1.2186 0.0072 15 1 2.2419 -1.8217 -0.8859 16 6 2.1756 -2.0505 1.2704 17 6 3.0714 -3.2622 1.2444 18 1 3.7380 -3.4229 0.4100 19 6 3.0398 -4.1653 2.2857 20 7 2.2283 -3.9692 3.3019 21 14 4.1496 -5.6675 2.2531 22 1 5.4440 -5.3408 2.9034 23 1 3.4955 -6.7822 2.9846 24 1 4.3915 -6.0738 0.8454 25 1 -0.3633 0.0059 1.0277 26 1 -0.3633 0.8868 -0.5191 27 1 -0.3633 -0.8931 -0.5086 28 1 3.3186 3.3335 -0.0183 29 1 5.1730 4.9850 -0.0231 30 1 7.5139 4.1492 -0.0237 31 1 2.4051 -1.4479 2.1491 32 1 1.1341 -2.3695 1.3104 33 1 2.2058 -4.6048 4.0342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871950746.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:11 Heat of formation + Delta-G solvation = 34.774935 kcal Electronic energy + Delta-G solvation = -20632.608516 eV Core-core repulsion = 17299.151664 eV Total energy + Delta-G solvation = -3333.456853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.79256 -41.04415 -38.64725 -37.77064 -36.04402 -34.80844 -33.67448 -32.33239 -31.55791 -29.08768 -28.03708 -25.45045 -24.59043 -23.80982 -21.70463 -20.96023 -19.38988 -18.39731 -17.85831 -17.50557 -17.03123 -16.63188 -16.41470 -16.12039 -15.86545 -15.38583 -14.69500 -14.50440 -14.33493 -14.26303 -13.68340 -13.53621 -13.33530 -13.22510 -13.11685 -12.86717 -12.69065 -12.54523 -12.40806 -12.14923 -11.66259 -11.51624 -11.18189 -10.96138 -10.69202 -10.66487 -10.38008 -9.28367 -8.27187 -6.33955 -0.27184 0.06099 0.54864 0.56414 1.08260 1.32545 1.36072 1.46134 1.53900 2.36391 2.60562 2.77085 3.08223 3.10403 3.45787 3.65366 3.86398 3.91741 4.10448 4.22540 4.31987 4.52984 4.63951 4.83637 4.89747 4.98602 5.03700 5.11452 5.27644 5.32389 5.42169 5.56092 5.71210 6.09397 6.23783 6.63507 6.76429 6.87889 7.33953 8.83892 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.005390 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.919633 B = 5193.393553 C = 6822.116832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.146 3.854 3 N -0.255 5.255 4 N -0.432 5.432 5 C 0.369 3.631 6 C -0.173 4.173 7 C -0.019 4.019 8 C -0.167 4.167 9 C 0.182 3.818 10 Cl -0.037 7.037 11 N -0.545 5.545 12 C 0.491 3.509 13 O -0.484 6.484 14 C -0.134 4.134 15 H 0.141 0.859 16 C 0.067 3.933 17 C -0.534 4.534 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.923 5.923 21 Si 0.950 3.050 22 H -0.288 1.288 23 H -0.269 1.269 24 H -0.268 1.268 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.170 0.830 29 H 0.207 0.793 30 H 0.186 0.814 31 H -0.015 1.015 32 H 0.051 0.949 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.907 19.114 -8.272 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 N -0.061 5.061 4 N -0.243 5.243 5 C 0.141 3.859 6 C -0.196 4.196 7 C -0.045 4.045 8 C -0.188 4.188 9 C 0.017 3.983 10 Cl -0.008 7.008 11 N -0.263 5.263 12 C 0.279 3.721 13 O -0.352 6.352 14 C -0.158 4.158 15 H 0.158 0.842 16 C 0.029 3.971 17 C -0.572 4.572 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.563 5.563 21 Si 0.776 3.224 22 H -0.215 1.215 23 H -0.193 1.193 24 H -0.192 1.192 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.188 0.812 29 H 0.224 0.776 30 H 0.204 0.796 31 H 0.004 0.996 32 H 0.069 0.931 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.145 18.728 -8.114 20.411 hybrid contribution 1.178 -1.581 0.379 2.008 sum 1.323 17.147 -7.735 18.857 Atomic orbital electron populations 1.20707 0.80132 1.06665 1.05752 1.26372 0.99423 0.88965 0.89831 1.74648 0.85389 1.26375 1.19707 1.47313 1.03762 1.05271 1.67960 1.18045 0.83783 0.87948 0.96121 1.21997 1.03941 0.89286 1.04335 1.22063 0.89315 1.02356 0.90757 1.22224 1.00708 0.92422 1.03477 1.21685 0.86704 0.90100 0.99767 1.98393 1.15565 1.90362 1.96501 1.66024 0.99356 1.42402 1.18507 1.22066 0.92568 0.82541 0.74897 1.90710 1.32766 1.66167 1.45537 1.22053 0.90361 0.97868 1.05501 0.84159 1.18639 0.98414 0.92225 0.87815 1.21463 1.22315 1.07518 1.05947 0.93172 1.25661 0.96827 1.00989 0.95048 1.70011 1.38784 1.37935 1.09568 0.85672 0.78697 0.79518 0.78529 1.21473 1.19337 1.19200 0.87875 0.86722 0.87253 0.81239 0.77621 0.79634 0.99630 0.93120 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.49 71.24 0.75 -0.60 16 2 C 0.15 4.43 6.93 46.83 0.32 4.76 16 3 N -0.25 -8.35 11.15 -40.85 -0.46 -8.80 16 4 N -0.43 -17.51 3.71 -307.12 -1.14 -18.65 16 5 C 0.37 13.64 7.50 132.86 1.00 14.63 16 6 C -0.17 -4.31 9.65 22.49 0.22 -4.09 16 7 C -0.02 -0.32 10.17 22.44 0.23 -0.09 16 8 C -0.17 -3.32 9.87 22.40 0.22 -3.10 16 9 C 0.18 5.67 7.27 84.67 0.62 6.28 16 10 Cl -0.04 -1.08 29.10 -2.72 -0.08 -1.16 16 11 N -0.55 -22.11 8.88 -183.82 -1.63 -23.75 16 12 C 0.49 23.60 7.49 87.94 0.66 24.26 16 13 O -0.48 -27.48 15.57 -3.03 -0.05 -27.53 16 14 C -0.13 -5.51 3.01 -11.74 -0.04 -5.54 16 15 H 0.14 5.32 8.14 -2.38 -0.02 5.30 16 16 C 0.07 3.38 4.52 29.85 0.13 3.52 16 17 C -0.53 -31.17 8.36 25.60 0.21 -30.95 16 18 H 0.05 3.04 7.06 -2.91 -0.02 3.02 16 19 C 0.01 0.79 5.46 84.65 0.46 1.25 16 20 N -0.92 -55.19 13.29 21.45 0.28 -54.90 16 21 Si 0.95 47.00 29.54 68.60 2.03 49.02 16 22 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.17 3.53 7.59 -2.91 -0.02 3.51 16 29 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -82.52 311.22 4.89 -77.63 By element: Atomic # 1 Polarization: -3.34 SS G_CDS: 1.14 Total: -2.20 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 4.78 Total: 10.34 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -2.94 Total: -106.10 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -82.52 4.89 -77.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871950746.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.408 kcal (2) G-P(sol) polarization free energy of solvation -82.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds