Wall clock time and date at job start Tue Mar 31 2020 07:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27570 * 126.41613 * 2 1 4 4 N 1.39155 * 113.16542 * 179.97438 * 3 2 1 5 5 C 1.40051 * 124.43766 * 179.73030 * 4 3 2 6 6 C 1.39220 * 120.49160 * 95.02838 * 5 4 3 7 7 C 1.38555 * 118.37058 * 180.02562 * 6 5 4 8 8 C 1.38227 * 119.26581 * 359.97438 * 7 6 5 9 9 N 1.31896 * 120.93565 * 359.97438 * 8 7 6 10 10 C 1.31892 * 121.77909 * 359.71137 * 9 8 7 11 11 Cl 1.73597 * 119.68686 * 180.30963 * 10 9 8 12 12 C 1.34954 * 111.12089 * 0.02562 * 4 3 2 13 13 O 1.21299 * 127.50023 * 179.97438 * 12 4 3 14 14 C 1.51440 * 126.41868 * 179.97438 * 2 1 3 15 15 H 1.09005 * 110.60887 * 298.69576 * 14 2 1 16 16 C 1.52999 * 110.60765 * 61.50740 * 14 2 1 17 17 C 1.50700 * 109.47187 * 185.00179 * 16 14 2 18 18 H 1.07997 * 119.99989 * 359.97438 * 17 16 14 19 19 C 1.37879 * 119.99937 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00095 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99880 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47499 * 89.99947 * 21 19 17 23 23 H 1.48504 * 109.47071 * 209.99911 * 21 19 17 24 24 H 1.48497 * 109.47111 * 329.99537 * 21 19 17 25 25 H 1.08995 * 109.47600 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47058 * 120.03202 * 1 2 3 27 27 H 1.09012 * 109.47141 * 240.02428 * 1 2 3 28 28 H 1.07997 * 120.81493 * 359.97438 * 6 5 4 29 29 H 1.08003 * 120.36715 * 180.02562 * 7 6 5 30 30 H 1.08004 * 119.53097 * 180.02562 * 8 7 6 31 31 H 1.08999 * 109.46935 * 304.99877 * 16 14 2 32 32 H 1.08997 * 109.47340 * 64.99774 * 16 14 2 33 33 H 0.97005 * 120.00094 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7076 0.0006 5 6 4.6545 1.6504 -0.0047 6 6 5.2485 2.0540 1.1879 7 6 6.2690 2.9895 1.1316 8 6 6.6619 3.4878 -0.0964 9 7 6.0800 3.0847 -1.2093 10 6 5.1094 2.1918 -1.2017 11 17 4.3871 1.6942 -2.6998 12 6 3.8036 -0.6292 0.0004 13 8 4.8580 -1.2289 0.0004 14 6 2.4061 -1.2186 0.0005 15 1 2.2396 -1.8178 0.8958 16 6 2.1760 -2.0581 -1.2577 17 6 2.9906 -3.3232 -1.1735 18 1 3.6108 -3.5095 -0.3092 19 6 2.9442 -4.2426 -2.1999 20 7 3.6555 -5.3464 -2.1266 21 14 1.8722 -3.9199 -3.6951 22 1 2.6589 -3.1872 -4.7196 23 1 1.4072 -5.2125 -4.2592 24 1 0.6979 -3.1034 -3.2954 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5143 -0.8897 27 1 -0.3634 -0.5135 0.8903 28 1 4.9214 1.6484 2.1339 29 1 6.7526 3.3250 2.0371 30 1 7.4572 4.2169 -0.1453 31 1 1.1188 -2.3114 -1.3372 32 1 2.4800 -1.4880 -2.1355 33 1 3.6232 -5.9931 -2.8489 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871953452.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:13 Heat of formation + Delta-G solvation = 32.543078 kcal Electronic energy + Delta-G solvation = -20968.381606 eV Core-core repulsion = 17634.827972 eV Total energy + Delta-G solvation = -3333.553633 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71327 -41.12933 -38.64879 -37.84598 -36.23773 -34.92705 -33.36138 -32.66237 -31.59529 -28.95581 -28.25662 -25.11511 -24.79890 -23.63090 -21.80388 -20.89453 -19.40135 -18.69001 -18.35170 -18.12561 -16.93134 -16.42365 -16.32153 -15.81911 -15.64571 -15.48416 -14.74164 -14.65415 -14.55057 -14.36998 -13.87420 -13.66872 -13.41394 -13.19889 -12.95896 -12.87852 -12.73680 -12.54228 -12.41999 -11.87554 -11.68881 -11.57665 -11.27715 -11.00689 -10.81319 -10.64931 -10.06160 -9.84657 -8.28389 -6.33472 -0.43621 -0.11796 0.58844 0.60239 1.14412 1.33400 1.35983 1.45731 1.46867 2.33745 2.34245 2.97329 3.07758 3.17538 3.35077 3.51167 3.72649 3.87541 3.95377 4.15920 4.20492 4.50436 4.68108 4.73167 4.83751 4.90060 4.97284 5.05520 5.12203 5.13794 5.36922 5.48750 5.60047 6.23976 6.45396 6.53694 6.72248 6.79989 7.28577 8.88940 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.005627 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.248666 B = 4974.392786 C = 5259.217541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.129 3.871 3 N -0.255 5.255 4 N -0.439 5.439 5 C 0.097 3.903 6 C -0.058 4.058 7 C -0.136 4.136 8 C 0.125 3.875 9 N -0.494 5.494 10 C 0.162 3.838 11 Cl -0.041 7.041 12 C 0.504 3.496 13 O -0.521 6.521 14 C -0.124 4.124 15 H 0.140 0.860 16 C 0.025 3.975 17 C -0.522 4.522 18 H 0.031 0.969 19 C 0.006 3.994 20 N -0.950 5.950 21 Si 0.939 3.061 22 H -0.285 1.285 23 H -0.279 1.279 24 H -0.221 1.221 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.161 0.839 29 H 0.202 0.798 30 H 0.217 0.783 31 H 0.072 0.928 32 H 0.004 0.996 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 20.473 7.764 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 N -0.060 5.060 4 N -0.255 5.255 5 C 0.004 3.996 6 C -0.085 4.085 7 C -0.156 4.156 8 C -0.032 4.032 9 N -0.206 5.206 10 C -0.003 4.003 11 Cl -0.012 7.012 12 C 0.293 3.707 13 O -0.392 6.392 14 C -0.148 4.148 15 H 0.158 0.842 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.050 0.950 19 C -0.190 4.190 20 N -0.591 5.591 21 Si 0.762 3.238 22 H -0.211 1.211 23 H -0.205 1.205 24 H -0.143 1.143 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.136 0.864 28 H 0.179 0.821 29 H 0.219 0.781 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.022 0.978 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.054 21.330 6.751 22.581 hybrid contribution 0.143 -1.842 -0.381 1.887 sum -2.911 19.488 6.370 20.708 Atomic orbital electron populations 1.20688 0.80683 1.05997 1.06121 1.26211 0.99205 0.88850 0.92085 1.74838 0.86755 1.26596 1.17766 1.46879 1.02955 1.04230 1.71421 1.18177 0.92389 0.95413 0.93598 1.22190 0.94588 0.94829 0.96913 1.22732 0.95673 0.95386 1.01795 1.23708 0.96892 0.96816 0.85822 1.67126 1.07666 1.11405 1.34412 1.22204 0.95037 0.95969 0.87067 1.98413 1.80881 1.89132 1.32793 1.21919 0.92396 0.82083 0.74310 1.90736 1.32998 1.66562 1.48908 1.21779 0.90515 0.97547 1.04936 0.84220 1.19234 0.99167 0.92608 0.90301 1.21251 1.26313 1.03122 1.05363 0.95019 1.25956 0.96993 0.94496 1.01593 1.70077 1.43093 1.11293 1.34605 0.85839 0.80734 0.78487 0.78771 1.21108 1.20451 1.14272 0.88088 0.87940 0.86387 0.82141 0.78125 0.76615 0.91000 0.97772 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.47 71.24 0.75 -0.53 16 2 C 0.13 3.69 6.93 46.83 0.32 4.02 16 3 N -0.25 -8.18 11.97 -40.85 -0.49 -8.66 16 4 N -0.44 -16.35 2.96 -301.79 -0.89 -17.24 16 5 C 0.10 3.28 5.79 38.25 0.22 3.50 16 6 C -0.06 -1.40 10.11 22.58 0.23 -1.18 16 7 C -0.14 -2.15 10.10 22.34 0.23 -1.92 16 8 C 0.12 2.27 11.17 84.68 0.95 3.22 16 9 N -0.49 -14.29 10.33 -186.19 -1.92 -16.21 16 10 C 0.16 5.60 7.29 84.87 0.62 6.22 16 11 Cl -0.04 -1.52 28.60 -2.72 -0.08 -1.60 16 12 C 0.50 22.46 7.55 87.94 0.66 23.12 16 13 O -0.52 -28.27 17.07 -3.09 -0.05 -28.33 16 14 C -0.12 -4.78 2.96 -11.74 -0.03 -4.82 16 15 H 0.14 5.09 8.14 -2.38 -0.02 5.07 16 16 C 0.03 1.14 3.55 29.85 0.11 1.25 16 17 C -0.52 -30.48 9.00 25.60 0.23 -30.25 16 18 H 0.03 2.11 7.68 -2.91 -0.02 2.09 16 19 C 0.01 0.38 5.47 84.66 0.46 0.84 16 20 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 21 Si 0.94 43.81 27.47 68.60 1.88 45.69 16 22 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.22 -8.68 6.54 99.48 0.65 -8.03 16 25 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.10 1.60 8.04 -2.39 -0.02 1.58 16 27 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 30 H 0.22 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.07 2.79 7.07 -2.39 -0.02 2.77 16 32 H 0.00 0.19 7.55 -2.39 -0.02 0.17 16 33 H 0.27 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -85.75 310.77 4.58 -81.18 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 1.09 Total: 2.79 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.74 Total: 3.48 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -3.01 Total: -103.21 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.05 Total: -28.33 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -85.75 4.58 -81.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871953452.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.720 kcal (2) G-P(sol) polarization free energy of solvation -85.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds