Wall clock time and date at job start Tue Mar 31 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27572 * 126.41923 * 2 1 4 4 N 1.39145 * 113.16285 * 180.02562 * 3 2 1 5 5 C 1.40054 * 124.43765 * 180.02562 * 4 3 2 6 6 C 1.39223 * 120.49186 * 94.69922 * 5 4 3 7 7 C 1.38558 * 118.37431 * 179.75728 * 6 5 4 8 8 C 1.38222 * 119.26309 * 0.49798 * 7 6 5 9 9 N 1.31903 * 120.93532 * 359.76653 * 8 7 6 10 10 C 1.31895 * 121.77757 * 359.97438 * 9 8 7 11 11 Cl 1.73597 * 119.68287 * 180.02562 * 10 9 8 12 12 C 1.35308 * 111.16285 * 0.09164 * 4 3 2 13 13 O 1.21302 * 127.67528 * 179.91723 * 12 4 3 14 14 C 1.51445 * 126.41215 * 180.02562 * 2 1 3 15 15 H 1.08998 * 110.60893 * 61.30881 * 14 2 1 16 16 C 1.53000 * 110.60716 * 298.49255 * 14 2 1 17 17 C 1.50703 * 109.46912 * 177.15490 * 16 14 2 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99923 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00088 * 21 19 17 23 23 H 1.48495 * 109.46891 * 210.00496 * 21 19 17 24 24 H 1.48504 * 109.47189 * 330.00185 * 21 19 17 25 25 H 1.08996 * 109.47091 * 269.97569 * 1 2 3 26 26 H 1.08996 * 109.46871 * 29.97896 * 1 2 3 27 27 H 1.08999 * 109.47071 * 149.97701 * 1 2 3 28 28 H 1.08004 * 120.81170 * 359.97438 * 6 5 4 29 29 H 1.08000 * 120.36794 * 180.23879 * 7 6 5 30 30 H 1.07992 * 119.53634 * 179.74373 * 8 7 6 31 31 H 1.09002 * 109.47398 * 297.15568 * 16 14 2 32 32 H 1.09001 * 109.47194 * 57.15748 * 16 14 2 33 33 H 0.97000 * 119.99684 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7075 -0.0006 5 6 4.6546 1.6502 -0.0002 6 6 5.2435 2.0522 1.1956 7 6 6.2681 2.9835 1.1446 8 6 6.6627 3.4874 -0.0805 9 7 6.0813 3.0907 -1.1961 10 6 5.1060 2.2027 -1.1932 11 17 4.3796 1.7188 -2.6938 12 6 3.8049 -0.6327 -0.0030 13 8 4.8579 -1.2350 -0.0055 14 6 2.4060 -1.2188 -0.0005 15 1 2.2396 -1.8179 -0.8958 16 6 2.1758 -2.0582 1.2577 17 6 3.0306 -3.2980 1.1978 18 1 3.6739 -3.4696 0.3475 19 6 2.9913 -4.2129 2.2284 20 7 3.7376 -5.2945 2.1763 21 14 1.8791 -3.9156 3.6995 22 1 0.5471 -4.5201 3.4432 23 1 2.4799 -4.5356 4.9076 24 1 1.7260 -2.4546 3.9170 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.9122 1.6453 2.1396 29 1 6.7503 3.3151 2.0523 30 1 7.4580 4.2166 -0.1251 31 1 2.4439 -1.4743 2.1382 32 1 1.1255 -2.3436 1.3170 33 1 3.7097 -5.9384 2.9013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871953453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:15 Heat of formation + Delta-G solvation = 57.124964 kcal Electronic energy + Delta-G solvation = -20882.989579 eV Core-core repulsion = 17550.501897 eV Total energy + Delta-G solvation = -3332.487683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30893 -40.01710 -37.01118 -36.68112 -34.79312 -33.09206 -32.25781 -30.90341 -30.54032 -27.79976 -26.52527 -23.90212 -23.61246 -22.02437 -20.24367 -19.55041 -17.91463 -17.30164 -17.12210 -16.56623 -15.43173 -15.02724 -14.78353 -14.54041 -14.28576 -13.91223 -13.56782 -13.40095 -13.33910 -12.75952 -12.59996 -12.36891 -11.98253 -11.82751 -11.71549 -11.58983 -11.32922 -11.10026 -10.61264 -10.22879 -10.16536 -10.00657 -9.74512 -9.55345 -9.23190 -8.81669 -8.59191 -8.46828 -6.08081 -4.08146 0.60444 0.89330 1.71597 1.95613 2.47123 2.96399 3.22943 3.31309 3.32071 3.34848 4.29469 4.33051 4.37176 4.49846 4.59948 4.70555 4.82709 5.04681 5.20400 5.28675 5.58043 5.64749 5.73029 5.75544 5.78767 5.86871 6.00094 6.17064 6.38861 6.72882 6.81946 6.97031 7.44598 7.59285 7.90140 8.32101 8.44964 9.01999 9.50255 11.05129 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.005218 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.216606 B = 5364.565613 C = 5812.168723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.105 3.895 3 N -0.245 5.245 4 N -0.449 5.449 5 C 0.138 3.862 6 C -0.048 4.048 7 C -0.162 4.162 8 C 0.120 3.880 9 N -0.474 5.474 10 C 0.188 3.812 11 Cl -0.019 7.019 12 C 0.517 3.483 13 O -0.459 6.459 14 C -0.118 4.118 15 H 0.132 0.868 16 C 0.019 3.981 17 C -0.522 4.522 18 H 0.083 0.917 19 C 0.072 3.928 20 N -0.895 5.895 21 Si 0.873 3.127 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.267 1.267 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.171 0.829 31 H 0.018 0.982 32 H 0.035 0.965 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 17.536 -3.118 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 N -0.049 5.049 4 N -0.267 5.267 5 C 0.044 3.956 6 C -0.076 4.076 7 C -0.182 4.182 8 C -0.038 4.038 9 N -0.185 5.185 10 C 0.022 3.978 11 Cl 0.010 6.990 12 C 0.305 3.695 13 O -0.325 6.325 14 C -0.141 4.141 15 H 0.149 0.851 16 C -0.020 4.020 17 C -0.560 4.560 18 H 0.101 0.899 19 C -0.130 4.130 20 N -0.533 5.533 21 Si 0.700 3.300 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.192 1.192 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.188 0.812 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.402 18.332 -3.964 18.808 hybrid contribution -0.618 -1.109 1.521 1.981 sum -2.020 17.224 -2.443 17.513 Atomic orbital electron populations 1.20339 0.84840 1.04079 1.04067 1.25573 0.97429 0.91748 0.94108 1.74728 0.87591 1.26517 1.16109 1.47033 1.01755 1.04924 1.72968 1.17737 0.91526 0.94229 0.92119 1.21951 0.93812 0.93823 0.97972 1.22195 0.97780 0.98015 1.00234 1.22772 0.97244 0.97180 0.86560 1.67099 1.07653 1.11677 1.32088 1.22120 0.93656 0.94502 0.87557 1.98412 1.80185 1.89272 1.31151 1.21600 0.92313 0.80691 0.74853 1.90791 1.31237 1.64738 1.45688 1.21825 0.90256 0.96029 1.06027 0.85070 1.19367 0.98455 0.94978 0.89171 1.21042 1.24701 1.02507 1.07708 0.89900 1.24952 0.95328 0.94905 0.97803 1.69903 1.39599 1.10780 1.33005 0.86900 0.81294 0.78819 0.83009 1.19917 1.21198 1.19215 0.89311 0.90164 0.89193 0.83344 0.83244 0.81228 0.96343 0.94656 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.49 36.01 0.38 -0.40 16 2 C 0.10 1.61 6.93 -78.72 -0.55 1.06 16 3 N -0.24 -4.07 11.97 35.53 0.43 -3.65 16 4 N -0.45 -8.29 2.97 -9.28 -0.03 -8.32 16 5 C 0.14 2.32 5.80 -83.45 -0.48 1.84 16 6 C -0.05 -0.67 10.11 -39.10 -0.40 -1.06 16 7 C -0.16 -1.68 10.10 -39.47 -0.40 -2.07 16 8 C 0.12 1.28 11.17 -17.53 -0.20 1.09 16 9 N -0.47 -6.83 10.33 -10.21 -0.11 -6.94 16 10 C 0.19 3.06 7.29 -17.24 -0.13 2.93 16 11 Cl -0.02 -0.30 28.60 -51.86 -1.48 -1.78 16 12 C 0.52 11.16 7.56 -10.27 -0.08 11.08 16 13 O -0.46 -11.70 16.86 5.54 0.09 -11.61 16 14 C -0.12 -2.27 2.98 -92.08 -0.27 -2.55 16 15 H 0.13 2.43 8.14 -51.93 -0.42 2.01 16 16 C 0.02 0.42 3.57 -27.88 -0.10 0.32 16 17 C -0.52 -14.54 8.95 -34.44 -0.31 -14.85 16 18 H 0.08 2.59 7.48 -52.49 -0.39 2.20 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.89 -27.45 13.96 55.43 0.77 -26.67 16 21 Si 0.87 20.76 27.47 -169.99 -4.67 16.09 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 32 H 0.04 0.72 7.57 -51.93 -0.39 0.32 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -34.95 310.63 -6.22 -41.18 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -3.29 Total: -2.33 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.62 Total: -0.65 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 1.07 Total: -45.58 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.48 Total: -1.78 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.95 -6.22 -41.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871953453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.302 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds