Wall clock time and date at job start Tue Mar 31 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.27572 * 126.41923 * 2 1 4 4 N 1.39145 * 113.16285 * 180.02562 * 3 2 1 5 5 C 1.40054 * 124.43765 * 180.02562 * 4 3 2 6 6 C 1.39223 * 120.49186 * 94.69922 * 5 4 3 7 7 C 1.38558 * 118.37431 * 179.75728 * 6 5 4 8 8 C 1.38222 * 119.26309 * 0.49798 * 7 6 5 9 9 N 1.31903 * 120.93532 * 359.76653 * 8 7 6 10 10 C 1.31895 * 121.77757 * 359.97438 * 9 8 7 11 11 Cl 1.73597 * 119.68287 * 180.02562 * 10 9 8 12 12 C 1.35308 * 111.16285 * 0.09164 * 4 3 2 13 13 O 1.21302 * 127.67528 * 179.91723 * 12 4 3 14 14 C 1.51445 * 126.41215 * 180.02562 * 2 1 3 15 15 H 1.08998 * 110.60893 * 61.30881 * 14 2 1 16 16 C 1.53000 * 110.60716 * 298.49255 * 14 2 1 17 17 C 1.50703 * 109.46912 * 177.15490 * 16 14 2 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 14 20 20 N 1.31512 * 119.99923 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 90.00088 * 21 19 17 23 23 H 1.48495 * 109.46891 * 210.00496 * 21 19 17 24 24 H 1.48504 * 109.47189 * 330.00185 * 21 19 17 25 25 H 1.08996 * 109.47091 * 269.97569 * 1 2 3 26 26 H 1.08996 * 109.46871 * 29.97896 * 1 2 3 27 27 H 1.08999 * 109.47071 * 149.97701 * 1 2 3 28 28 H 1.08004 * 120.81170 * 359.97438 * 6 5 4 29 29 H 1.08000 * 120.36794 * 180.23879 * 7 6 5 30 30 H 1.07992 * 119.53634 * 179.74373 * 8 7 6 31 31 H 1.09002 * 109.47398 * 297.15568 * 16 14 2 32 32 H 1.09001 * 109.47194 * 57.15748 * 16 14 2 33 33 H 0.97000 * 119.99684 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7075 -0.0006 5 6 4.6546 1.6502 -0.0002 6 6 5.2435 2.0522 1.1956 7 6 6.2681 2.9835 1.1446 8 6 6.6627 3.4874 -0.0805 9 7 6.0813 3.0907 -1.1961 10 6 5.1060 2.2027 -1.1932 11 17 4.3796 1.7188 -2.6938 12 6 3.8049 -0.6327 -0.0030 13 8 4.8579 -1.2350 -0.0055 14 6 2.4060 -1.2188 -0.0005 15 1 2.2396 -1.8179 -0.8958 16 6 2.1758 -2.0582 1.2577 17 6 3.0306 -3.2980 1.1978 18 1 3.6739 -3.4696 0.3475 19 6 2.9913 -4.2129 2.2284 20 7 3.7376 -5.2945 2.1763 21 14 1.8791 -3.9156 3.6995 22 1 0.5471 -4.5201 3.4432 23 1 2.4799 -4.5356 4.9076 24 1 1.7260 -2.4546 3.9170 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.9122 1.6453 2.1396 29 1 6.7503 3.3151 2.0523 30 1 7.4580 4.2166 -0.1251 31 1 2.4439 -1.4743 2.1382 32 1 1.1255 -2.3436 1.3170 33 1 3.7097 -5.9384 2.9013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871953453.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:15 Heat of formation + Delta-G solvation = 32.387148 kcal Electronic energy + Delta-G solvation = -20884.062292 eV Core-core repulsion = 17550.501897 eV Total energy + Delta-G solvation = -3333.560395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.68781 -41.13085 -38.65377 -37.85126 -36.22179 -34.91929 -33.37123 -32.65706 -31.59538 -28.95791 -28.24430 -25.09292 -24.83214 -23.62800 -21.79142 -20.89949 -19.36147 -18.68359 -18.33819 -18.17322 -16.92800 -16.43042 -16.33931 -15.83132 -15.58802 -15.46787 -14.80377 -14.61726 -14.49104 -14.40424 -13.80693 -13.66903 -13.42998 -13.21933 -12.95783 -12.87908 -12.77772 -12.51587 -12.38107 -11.89446 -11.68672 -11.53521 -11.27117 -11.03660 -10.79150 -10.63261 -10.06978 -9.83817 -8.26169 -6.32659 -0.44106 -0.13809 0.56984 0.59323 1.15316 1.36790 1.40624 1.44649 1.50508 2.33382 2.36871 2.97581 3.09033 3.16554 3.33400 3.52709 3.71457 3.86503 3.94193 4.15798 4.18746 4.50397 4.67286 4.73279 4.84294 4.90680 4.96858 5.04409 5.11473 5.15703 5.35994 5.49799 5.59844 6.26108 6.43657 6.53381 6.73069 6.80664 7.29792 8.91504 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.005218 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.216606 B = 5364.565613 C = 5812.168723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.129 3.871 3 N -0.255 5.255 4 N -0.441 5.441 5 C 0.098 3.902 6 C -0.064 4.064 7 C -0.138 4.138 8 C 0.127 3.873 9 N -0.491 5.491 10 C 0.168 3.832 11 Cl -0.033 7.033 12 C 0.505 3.495 13 O -0.519 6.519 14 C -0.125 4.125 15 H 0.133 0.867 16 C 0.027 3.973 17 C -0.528 4.528 18 H 0.027 0.973 19 C 0.003 3.997 20 N -0.953 5.953 21 Si 0.951 3.049 22 H -0.249 1.249 23 H -0.291 1.291 24 H -0.244 1.244 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.150 0.850 29 H 0.198 0.802 30 H 0.219 0.781 31 H 0.015 0.985 32 H 0.070 0.930 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.357 20.380 -1.329 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 N -0.059 5.059 4 N -0.257 5.257 5 C 0.005 3.995 6 C -0.092 4.092 7 C -0.157 4.157 8 C -0.030 4.030 9 N -0.202 5.202 10 C 0.003 3.997 11 Cl -0.005 7.005 12 C 0.294 3.706 13 O -0.390 6.390 14 C -0.149 4.149 15 H 0.150 0.850 16 C -0.011 4.011 17 C -0.566 4.566 18 H 0.045 0.955 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.774 3.226 22 H -0.173 1.173 23 H -0.217 1.217 24 H -0.167 1.167 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.168 0.832 29 H 0.215 0.785 30 H 0.235 0.765 31 H 0.033 0.967 32 H 0.088 0.912 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.303 21.241 -2.203 21.608 hybrid contribution 0.100 -1.910 0.913 2.119 sum -3.203 19.331 -1.290 19.636 Atomic orbital electron populations 1.20683 0.80601 1.06243 1.05927 1.26222 0.99219 0.88789 0.92128 1.74813 0.86752 1.26608 1.17758 1.46974 1.02903 1.04191 1.71615 1.18142 0.92437 0.95349 0.93606 1.22194 0.94951 0.94998 0.97020 1.22707 0.95562 0.95426 1.02031 1.23683 0.96951 0.96707 0.85621 1.67155 1.07522 1.11610 1.33955 1.22110 0.94832 0.95803 0.86984 1.98390 1.80600 1.89585 1.31876 1.21980 0.92377 0.82020 0.74206 1.90738 1.33208 1.66293 1.48777 1.21789 0.90617 0.97588 1.04916 0.84993 1.19219 0.98919 0.92681 0.90284 1.21280 1.24424 1.04868 1.06023 0.95454 1.26054 0.97292 0.94298 1.01700 1.70103 1.42295 1.12410 1.34524 0.85658 0.79409 0.80063 0.77520 1.17328 1.21748 1.16706 0.87271 0.87778 0.87314 0.83194 0.78515 0.76459 0.96712 0.91199 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 10.49 71.24 0.75 -0.52 16 2 C 0.13 3.72 6.93 46.83 0.32 4.04 16 3 N -0.25 -8.24 11.97 -40.84 -0.49 -8.72 16 4 N -0.44 -16.58 2.97 -301.35 -0.89 -17.47 16 5 C 0.10 3.33 5.80 38.25 0.22 3.55 16 6 C -0.06 -1.72 10.11 22.58 0.23 -1.49 16 7 C -0.14 -2.40 10.10 22.34 0.23 -2.17 16 8 C 0.13 2.33 11.17 84.68 0.95 3.27 16 9 N -0.49 -13.58 10.33 -186.21 -1.92 -15.50 16 10 C 0.17 5.51 7.29 84.87 0.62 6.12 16 11 Cl -0.03 -1.09 28.60 -2.72 -0.08 -1.16 16 12 C 0.50 22.76 7.56 87.88 0.66 23.42 16 13 O -0.52 -28.48 16.86 -3.10 -0.05 -28.53 16 14 C -0.13 -4.87 2.98 -11.74 -0.03 -4.91 16 15 H 0.13 5.05 8.14 -2.39 -0.02 5.03 16 16 C 0.03 1.20 3.57 29.85 0.11 1.31 16 17 C -0.53 -30.49 8.95 25.60 0.23 -30.26 16 18 H 0.03 1.83 7.48 -2.91 -0.02 1.81 16 19 C 0.00 0.17 5.47 84.65 0.46 0.64 16 20 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 21 Si 0.95 42.24 27.47 68.60 1.88 44.12 16 22 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 25 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 29 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.22 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 32 H 0.07 2.61 7.57 -2.39 -0.02 2.59 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -83.97 310.63 4.58 -79.39 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.09 Total: 5.45 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 4.74 Total: 3.00 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -3.01 Total: -102.28 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.05 Total: -28.53 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.12 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.16 kcal Total: -83.97 4.58 -79.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871953453.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.780 kcal (2) G-P(sol) polarization free energy of solvation -83.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds