Wall clock time and date at job start Tue Mar 31 2020 07:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.27567 * 126.41392 * 2 1 4 4 N 1.39154 * 113.16402 * 180.02562 * 3 2 1 5 5 C 1.39639 * 124.43748 * 179.97438 * 4 3 2 6 6 C 1.39466 * 120.85634 * 0.02907 * 5 4 3 7 7 C 1.37896 * 119.10401 * 180.02562 * 6 5 4 8 8 N 1.31999 * 120.86218 * 359.97438 * 7 6 5 9 9 C 1.32046 * 121.87546 * 0.02562 * 8 7 6 10 10 Cl 1.73605 * 119.59765 * 180.02562 * 9 8 7 11 11 C 1.38152 * 120.80472 * 359.71777 * 9 8 7 12 12 C 1.35306 * 111.15858 * 359.90926 * 4 3 2 13 13 O 1.21294 * 127.67414 * 180.09402 * 12 4 3 14 14 C 1.51442 * 126.41900 * 180.02562 * 2 1 3 15 15 H 1.09007 * 110.60608 * 298.65602 * 14 2 1 16 16 C 1.53000 * 110.60433 * 61.46499 * 14 2 1 17 17 C 1.50703 * 109.46912 * 182.84918 * 16 14 2 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 14 19 19 C 1.37877 * 120.00001 * 180.02562 * 17 16 14 20 20 N 1.31517 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47116 * 59.99536 * 21 19 17 23 23 H 1.48500 * 109.46585 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46730 * 299.99515 * 21 19 17 25 25 H 1.09002 * 109.47444 * 269.97421 * 1 2 3 26 26 H 1.08998 * 109.47283 * 29.98280 * 1 2 3 27 27 H 1.09007 * 109.46552 * 149.97694 * 1 2 3 28 28 H 1.07998 * 120.44851 * 359.97438 * 6 5 4 29 29 H 1.08007 * 119.57216 * 179.97438 * 7 6 5 30 30 H 1.08001 * 120.47073 * 180.28854 * 11 9 8 31 31 H 1.09002 * 109.47398 * 302.84996 * 16 14 2 32 32 H 1.09001 * 109.47194 * 62.85176 * 16 14 2 33 33 H 0.97000 * 120.00333 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6188 0.7077 -0.0006 5 6 4.6514 1.6477 -0.0012 6 6 4.3744 3.0145 -0.0007 7 6 5.4220 3.9112 -0.0019 8 7 6.6732 3.4907 -0.0030 9 6 6.9769 2.2056 -0.0035 10 17 8.6432 1.7184 -0.0043 11 6 5.9849 1.2442 0.0030 12 6 3.8049 -0.6325 0.0010 13 8 4.8579 -1.2347 0.0026 14 6 2.4061 -1.2187 -0.0005 15 1 2.2401 -1.8183 0.8945 16 6 2.1753 -2.0575 -1.2591 17 6 3.0301 -3.2972 -1.2002 18 1 3.6733 -3.4697 -0.3500 19 6 2.9910 -4.2112 -2.2318 20 7 2.2074 -4.0014 -3.2669 21 14 4.0501 -5.7482 -2.1585 22 1 3.6846 -6.5445 -0.9595 23 1 3.8261 -6.5623 -3.3801 24 1 5.4811 -5.3598 -2.0774 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 3.3532 3.3660 -0.0002 29 1 5.2161 4.9715 -0.0019 30 1 6.2395 0.1946 0.0072 31 1 1.1249 -2.3429 -1.3180 32 1 2.4429 -1.4731 -2.1394 33 1 2.1801 -4.6442 -3.9928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871953531.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:27 Heat of formation + Delta-G solvation = 29.338287 kcal Electronic energy + Delta-G solvation = -20594.022472 eV Core-core repulsion = 17260.329868 eV Total energy + Delta-G solvation = -3333.692603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.92411 -41.05947 -38.87199 -37.83556 -36.40773 -35.05902 -32.63679 -32.21365 -32.19013 -29.19085 -28.10304 -25.50954 -24.63371 -23.87144 -21.81975 -21.02745 -19.47287 -18.46093 -17.62569 -17.45718 -17.14016 -16.81434 -16.51335 -16.13378 -15.91431 -15.50276 -14.91894 -14.74511 -14.50787 -14.30608 -13.74953 -13.55462 -13.38460 -13.31092 -13.12211 -12.86023 -12.76242 -12.64226 -12.46283 -12.20326 -11.70615 -11.57422 -11.36314 -10.92669 -10.69622 -10.50217 -10.21807 -9.55747 -8.26209 -6.33774 -0.29469 -0.19513 0.47338 0.53388 1.02857 1.36384 1.39443 1.46290 1.47002 2.37294 2.53043 2.68924 3.04019 3.09607 3.39134 3.58464 3.65198 3.80667 4.05903 4.16726 4.20595 4.47085 4.51778 4.64144 4.81437 4.88762 5.01446 5.09626 5.28108 5.28561 5.38266 5.51546 5.71075 6.08553 6.38761 6.54104 6.56911 6.76907 7.34681 8.84472 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.014656 B = 0.005187 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.082314 B = 5396.669696 C = 7000.948169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.148 3.852 3 N -0.263 5.263 4 N -0.429 5.429 5 C 0.217 3.783 6 C -0.179 4.179 7 C 0.151 3.849 8 N -0.508 5.508 9 C 0.195 3.805 10 Cl -0.024 7.024 11 C -0.215 4.215 12 C 0.496 3.504 13 O -0.495 6.495 14 C -0.133 4.133 15 H 0.147 0.853 16 C 0.065 3.935 17 C -0.535 4.535 18 H 0.055 0.945 19 C 0.014 3.986 20 N -0.923 5.923 21 Si 0.950 3.050 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.285 1.285 25 H 0.125 0.875 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.175 0.825 29 H 0.219 0.781 30 H 0.145 0.855 31 H 0.050 0.950 32 H -0.013 1.013 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.438 14.567 8.247 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 N -0.068 5.068 4 N -0.237 5.237 5 C 0.114 3.886 6 C -0.201 4.201 7 C -0.005 4.005 8 N -0.222 5.222 9 C 0.031 3.969 10 Cl 0.005 6.995 11 C -0.240 4.240 12 C 0.286 3.714 13 O -0.366 6.366 14 C -0.157 4.157 15 H 0.164 0.836 16 C 0.027 3.973 17 C -0.573 4.573 18 H 0.073 0.927 19 C -0.185 4.185 20 N -0.563 5.563 21 Si 0.775 3.225 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.211 1.211 25 H 0.143 0.857 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.193 0.807 29 H 0.236 0.764 30 H 0.163 0.837 31 H 0.068 0.932 32 H 0.005 0.995 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.919 15.695 8.088 17.680 hybrid contribution 0.627 -2.701 -0.374 2.798 sum -0.292 12.994 7.714 15.115 Atomic orbital electron populations 1.20728 0.80383 1.06052 1.06405 1.26356 0.99435 0.89031 0.89494 1.74765 0.85839 1.26335 1.19896 1.47288 1.04020 1.05203 1.67225 1.18041 0.85347 0.90153 0.95029 1.22230 1.04024 0.89459 1.04380 1.23294 0.84181 1.02114 0.90902 1.67160 1.24135 1.15036 1.15887 1.21247 0.87151 0.89816 0.98638 1.98394 1.14527 1.90216 1.96379 1.21894 0.91011 1.02621 1.08434 1.22141 0.92888 0.82072 0.74286 1.90640 1.32436 1.66328 1.47168 1.22046 0.89918 0.97872 1.05847 0.83593 1.18678 0.98515 0.92244 0.87861 1.21427 1.24694 1.05720 1.05494 0.92713 1.25672 0.96594 1.01226 0.95006 1.70008 1.39606 1.37573 1.09140 0.85726 0.78883 0.79711 0.78137 1.18563 1.20329 1.21096 0.85743 0.87707 0.88415 0.80730 0.76420 0.83719 0.93219 0.99470 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.49 71.24 0.75 -0.54 16 2 C 0.15 4.14 6.93 46.83 0.32 4.46 16 3 N -0.26 -7.94 11.29 -40.84 -0.46 -8.40 16 4 N -0.43 -15.58 3.72 -301.26 -1.12 -16.70 16 5 C 0.22 7.25 6.70 38.46 0.26 7.51 16 6 C -0.18 -4.37 9.69 22.48 0.22 -4.15 16 7 C 0.15 3.19 11.17 84.59 0.94 4.13 16 8 N -0.51 -14.06 10.34 -186.94 -1.93 -16.00 16 9 C 0.20 6.15 7.27 84.64 0.62 6.77 16 10 Cl -0.02 -0.69 29.10 -2.72 -0.08 -0.77 16 11 C -0.21 -7.64 9.17 22.51 0.21 -7.43 16 12 C 0.50 21.11 7.46 87.88 0.66 21.77 16 13 O -0.50 -24.33 14.20 -3.07 -0.04 -24.37 16 14 C -0.13 -4.98 2.98 -11.74 -0.03 -5.02 16 15 H 0.15 4.97 8.14 -2.38 -0.02 4.95 16 16 C 0.07 3.07 4.49 29.85 0.13 3.21 16 17 C -0.54 -29.29 8.39 25.60 0.21 -29.07 16 18 H 0.05 3.06 7.24 -2.91 -0.02 3.03 16 19 C 0.01 0.78 5.46 84.65 0.46 1.24 16 20 N -0.92 -53.29 13.29 21.45 0.28 -53.01 16 21 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 25 H 0.12 1.29 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.71 7.50 -2.38 -0.02 1.69 16 28 H 0.18 3.44 7.70 -2.91 -0.02 3.42 16 29 H 0.22 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.15 5.92 5.51 -2.91 -0.02 5.90 16 31 H 0.05 2.26 7.50 -2.39 -0.02 2.24 16 32 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.84 307.39 4.57 -66.27 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.15 Total: 3.45 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 4.75 Total: 2.88 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -3.23 Total: -94.10 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.04 Total: -24.37 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -70.84 4.57 -66.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871953531.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.607 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds