Wall clock time and date at job start Tue Mar 31 2020 07:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27574 * 126.41831 * 2 1 4 4 N 1.39144 * 113.16532 * 179.74125 * 3 2 1 5 5 C 1.40051 * 124.44000 * 180.02562 * 4 3 2 6 6 C 1.39320 * 120.47609 * 359.69552 * 5 4 3 7 7 C 1.38448 * 118.37909 * 179.71512 * 6 5 4 8 8 C 1.38441 * 119.22229 * 0.58117 * 7 6 5 9 9 Cl 1.73601 * 119.55728 * 179.70328 * 8 7 6 10 10 N 1.31944 * 120.88799 * 359.68116 * 8 7 6 11 11 C 1.31851 * 121.77500 * 0.02562 * 10 8 7 12 12 C 1.34955 * 111.12180 * 0.02562 * 4 3 2 13 13 O 1.21301 * 127.50213 * 179.97438 * 12 4 3 14 14 C 1.51442 * 126.41573 * 179.69420 * 2 1 3 15 15 H 1.09003 * 110.60197 * 298.77491 * 14 2 1 16 16 C 1.53002 * 110.60925 * 61.74202 * 14 2 1 17 17 C 1.50695 * 109.47076 * 185.00120 * 16 14 2 18 18 H 1.07998 * 120.00310 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99924 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47027 * 60.00468 * 21 19 17 23 23 H 1.48507 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47317 * 300.00219 * 21 19 17 25 25 H 1.09003 * 109.46987 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47773 * 120.02276 * 1 2 3 27 27 H 1.09001 * 109.47340 * 240.02655 * 1 2 3 28 28 H 1.08006 * 120.80999 * 0.02562 * 6 5 4 29 29 H 1.08007 * 120.39303 * 180.30266 * 7 6 5 30 30 H 1.07998 * 119.65439 * 180.02562 * 11 10 8 31 31 H 1.09007 * 109.46905 * 305.00071 * 16 14 2 32 32 H 1.08997 * 109.47199 * 64.99997 * 16 14 2 33 33 H 0.97000 * 120.00180 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7076 0.0058 5 6 4.6545 1.6503 0.0075 6 6 4.3689 3.0139 -0.0030 7 6 5.4261 3.9077 0.0053 8 6 6.7223 3.4214 0.0113 9 17 8.0545 4.5344 0.0139 10 7 6.9587 2.1233 0.0156 11 6 5.9804 1.2394 0.0138 12 6 3.8035 -0.6292 0.0095 13 8 4.8579 -1.2290 0.0143 14 6 2.4060 -1.2187 0.0065 15 1 2.2385 -1.8141 0.9040 16 6 2.1801 -2.0613 -1.2504 17 6 2.9944 -3.3261 -1.1604 18 1 3.6110 -3.5108 -0.2932 19 6 2.9514 -4.2481 -2.1846 20 7 2.2001 -4.0235 -3.2404 21 14 3.9613 -5.8156 -2.0733 22 1 3.5440 -6.5893 -0.8764 23 1 3.7419 -6.6335 -3.2932 24 1 5.4013 -5.4699 -1.9620 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5142 -0.8897 27 1 -0.3634 -0.5134 0.8902 28 1 3.3476 3.3651 -0.0122 29 1 5.2420 4.9720 0.0025 30 1 6.2131 0.1848 0.0179 31 1 1.1231 -2.3147 -1.3328 32 1 2.4871 -1.4933 -2.1286 33 1 2.1695 -4.6723 -3.9608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871953793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:20 Heat of formation + Delta-G solvation = 49.854558 kcal Electronic energy + Delta-G solvation = -20476.584752 eV Core-core repulsion = 17143.781801 eV Total energy + Delta-G solvation = -3332.802951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56525 -39.91740 -37.32558 -36.71043 -34.76346 -33.16712 -32.34969 -30.66509 -30.51923 -27.82829 -26.25068 -24.15354 -23.46418 -22.30103 -20.34067 -19.60601 -17.85223 -17.33507 -16.68091 -16.28218 -15.89251 -14.97573 -14.76579 -14.58997 -14.32689 -13.90563 -13.52945 -13.47672 -13.39366 -12.85399 -12.55730 -12.40950 -12.24115 -11.76511 -11.58652 -11.49103 -11.39520 -11.03993 -10.74489 -10.47527 -10.20676 -9.88509 -9.74827 -9.58650 -9.49980 -9.05480 -8.48502 -7.96956 -6.14166 -4.17084 0.76343 1.04059 1.73128 1.81229 2.32512 2.84253 3.30891 3.34863 3.40257 3.66607 4.00389 4.30227 4.44188 4.49045 4.65945 4.79254 4.89357 5.11908 5.24312 5.41646 5.54359 5.56193 5.63871 5.73767 5.83411 5.91583 6.10824 6.21443 6.36871 6.68907 7.23227 7.27349 7.62227 7.73987 7.83108 8.07124 8.13110 8.87275 9.48747 10.96804 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.004212 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.341872 B = 6646.832625 C = 7820.374209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.128 3.872 3 N -0.265 5.265 4 N -0.423 5.423 5 C 0.144 3.856 6 C -0.087 4.087 7 C -0.129 4.129 8 C 0.139 3.861 9 Cl -0.039 7.039 10 N -0.448 5.448 11 C 0.087 3.913 12 C 0.510 3.490 13 O -0.458 6.458 14 C -0.129 4.129 15 H 0.132 0.868 16 C 0.054 3.946 17 C -0.523 4.523 18 H 0.065 0.935 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.192 0.808 31 H 0.043 0.957 32 H 0.021 0.979 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.530 14.792 7.355 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 N -0.071 5.071 4 N -0.232 5.232 5 C 0.047 3.953 6 C -0.115 4.115 7 C -0.150 4.150 8 C -0.026 4.026 9 Cl -0.011 7.011 10 N -0.158 5.158 11 C -0.074 4.074 12 C 0.299 3.701 13 O -0.326 6.326 14 C -0.153 4.153 15 H 0.150 0.850 16 C 0.016 3.984 17 C -0.561 4.561 18 H 0.083 0.917 19 C -0.139 4.139 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.208 0.792 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.176 15.165 7.190 16.784 hybrid contribution -0.017 -1.187 -0.127 1.194 sum 0.159 13.978 7.063 15.662 Atomic orbital electron populations 1.20422 0.84430 1.04058 1.04790 1.25722 0.97708 0.91666 0.91249 1.74681 0.87268 1.26644 1.18485 1.47200 1.02682 1.05661 1.67670 1.18866 0.87647 0.89475 0.99315 1.21297 1.00764 0.90274 0.99167 1.21663 0.90286 1.01561 1.01491 1.21603 0.87879 0.89649 1.03492 1.98382 1.47672 1.58297 1.96754 1.67145 1.35993 1.01187 1.11477 1.23283 0.85306 1.00974 0.97846 1.21719 0.92794 0.80881 0.74693 1.90659 1.30823 1.65308 1.45829 1.22160 0.89358 0.96408 1.07375 0.85030 1.18960 0.99016 0.93268 0.87131 1.21086 1.27005 1.02790 1.05184 0.91723 1.24944 0.95347 0.98593 0.95063 1.69927 1.39283 1.36241 1.07967 0.86569 0.80990 0.82671 0.77373 1.20045 1.21263 1.19988 0.90214 0.88320 0.89052 0.82659 0.83361 0.79184 0.93914 0.96063 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.48 36.01 0.38 -0.41 16 2 C 0.13 1.89 6.93 -78.72 -0.55 1.34 16 3 N -0.26 -4.16 11.27 35.53 0.40 -3.76 16 4 N -0.42 -7.52 3.73 -9.38 -0.03 -7.56 16 5 C 0.14 2.38 6.68 -83.49 -0.56 1.83 16 6 C -0.09 -1.15 9.73 -39.10 -0.38 -1.53 16 7 C -0.13 -1.53 9.87 -39.43 -0.39 -1.92 16 8 C 0.14 1.95 7.27 -17.43 -0.13 1.83 16 9 Cl -0.04 -0.47 29.10 -51.86 -1.51 -1.98 16 10 N -0.45 -7.44 10.33 -10.20 -0.11 -7.55 16 11 C 0.09 1.51 10.52 -17.33 -0.18 1.32 16 12 C 0.51 10.35 7.46 -10.43 -0.08 10.27 16 13 O -0.46 -10.46 14.36 5.54 0.08 -10.38 16 14 C -0.13 -2.40 2.96 -92.08 -0.27 -2.67 16 15 H 0.13 2.25 8.14 -51.93 -0.42 1.83 16 16 C 0.05 1.25 4.49 -27.88 -0.13 1.13 16 17 C -0.52 -13.93 8.44 -34.44 -0.29 -14.22 16 18 H 0.06 1.74 7.43 -52.49 -0.39 1.35 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.90 -25.49 13.29 55.43 0.74 -24.75 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.16 1.79 7.70 -52.48 -0.40 1.38 16 29 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.19 3.60 5.37 -52.49 -0.28 3.32 16 31 H 0.04 0.97 8.04 -51.93 -0.42 0.55 16 32 H 0.02 0.55 8.12 -51.93 -0.42 0.12 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -31.01 308.75 -6.63 -37.64 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.16 Total: -1.31 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -2.67 Total: -1.40 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 1.00 Total: -43.62 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.51 Total: -1.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.01 -6.63 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871953793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.491 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds