Wall clock time and date at job start Tue Mar 31 2020 07:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27574 * 126.41831 * 2 1 4 4 N 1.39144 * 113.16532 * 179.74125 * 3 2 1 5 5 C 1.40051 * 124.44000 * 180.02562 * 4 3 2 6 6 C 1.39320 * 120.47609 * 359.69552 * 5 4 3 7 7 C 1.38448 * 118.37909 * 179.71512 * 6 5 4 8 8 C 1.38441 * 119.22229 * 0.58117 * 7 6 5 9 9 Cl 1.73601 * 119.55728 * 179.70328 * 8 7 6 10 10 N 1.31944 * 120.88799 * 359.68116 * 8 7 6 11 11 C 1.31851 * 121.77500 * 0.02562 * 10 8 7 12 12 C 1.34955 * 111.12180 * 0.02562 * 4 3 2 13 13 O 1.21301 * 127.50213 * 179.97438 * 12 4 3 14 14 C 1.51442 * 126.41573 * 179.69420 * 2 1 3 15 15 H 1.09003 * 110.60197 * 298.77491 * 14 2 1 16 16 C 1.53002 * 110.60925 * 61.74202 * 14 2 1 17 17 C 1.50695 * 109.47076 * 185.00120 * 16 14 2 18 18 H 1.07998 * 120.00310 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99924 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47027 * 60.00468 * 21 19 17 23 23 H 1.48507 * 109.47225 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47317 * 300.00219 * 21 19 17 25 25 H 1.09003 * 109.46987 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47773 * 120.02276 * 1 2 3 27 27 H 1.09001 * 109.47340 * 240.02655 * 1 2 3 28 28 H 1.08006 * 120.80999 * 0.02562 * 6 5 4 29 29 H 1.08007 * 120.39303 * 180.30266 * 7 6 5 30 30 H 1.07998 * 119.65439 * 180.02562 * 11 10 8 31 31 H 1.09007 * 109.46905 * 305.00071 * 16 14 2 32 32 H 1.08997 * 109.47199 * 64.99997 * 16 14 2 33 33 H 0.97000 * 120.00180 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7076 0.0058 5 6 4.6545 1.6503 0.0075 6 6 4.3689 3.0139 -0.0030 7 6 5.4261 3.9077 0.0053 8 6 6.7223 3.4214 0.0113 9 17 8.0545 4.5344 0.0139 10 7 6.9587 2.1233 0.0156 11 6 5.9804 1.2394 0.0138 12 6 3.8035 -0.6292 0.0095 13 8 4.8579 -1.2290 0.0143 14 6 2.4060 -1.2187 0.0065 15 1 2.2385 -1.8141 0.9040 16 6 2.1801 -2.0613 -1.2504 17 6 2.9944 -3.3261 -1.1604 18 1 3.6110 -3.5108 -0.2932 19 6 2.9514 -4.2481 -2.1846 20 7 2.2001 -4.0235 -3.2404 21 14 3.9613 -5.8156 -2.0733 22 1 3.5440 -6.5893 -0.8764 23 1 3.7419 -6.6335 -3.2932 24 1 5.4013 -5.4699 -1.9620 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3634 -0.5142 -0.8897 27 1 -0.3634 -0.5134 0.8902 28 1 3.3476 3.3651 -0.0122 29 1 5.2420 4.9720 0.0025 30 1 6.2131 0.1848 0.0179 31 1 1.1231 -2.3147 -1.3328 32 1 2.4871 -1.4933 -2.1286 33 1 2.1695 -4.6723 -3.9608 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871953793.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:19 Heat of formation + Delta-G solvation = 30.288950 kcal Electronic energy + Delta-G solvation = -20477.433181 eV Core-core repulsion = 17143.781801 eV Total energy + Delta-G solvation = -3333.651380 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.92034 -41.11769 -38.83329 -37.76552 -36.22144 -34.95494 -33.50323 -32.38549 -31.60258 -28.96193 -27.97466 -25.52697 -24.77849 -23.84710 -21.80708 -20.88603 -19.23490 -18.50096 -18.42541 -17.63947 -17.42098 -16.56681 -16.36921 -15.98452 -15.58544 -15.25435 -14.76539 -14.62010 -14.46121 -14.31064 -14.01445 -13.68228 -13.44669 -13.31148 -13.20839 -12.83699 -12.65697 -12.58819 -12.40684 -12.16130 -11.67056 -11.43657 -11.28082 -11.03789 -10.72319 -10.67143 -10.50072 -9.25115 -8.24685 -6.32189 -0.41926 -0.07862 0.49906 0.63191 1.04905 1.37758 1.41206 1.45350 1.48352 2.38856 2.46435 2.71397 3.07382 3.11420 3.32412 3.49128 3.60489 3.78091 3.95609 4.21869 4.28538 4.49471 4.54957 4.67601 4.81796 4.90029 4.92772 5.07921 5.29471 5.30517 5.36504 5.51881 5.72636 6.10457 6.41750 6.42579 6.62905 6.78502 7.36230 8.86042 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.004212 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.341872 B = 6646.832625 C = 7820.374209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.146 3.854 3 N -0.264 5.264 4 N -0.424 5.424 5 C 0.120 3.880 6 C -0.072 4.072 7 C -0.108 4.108 8 C 0.132 3.868 9 Cl -0.020 7.020 10 N -0.473 5.473 11 C 0.066 3.934 12 C 0.495 3.505 13 O -0.500 6.500 14 C -0.132 4.132 15 H 0.146 0.854 16 C 0.066 3.934 17 C -0.535 4.535 18 H 0.055 0.945 19 C 0.014 3.986 20 N -0.924 5.924 21 Si 0.950 3.050 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.285 1.285 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.180 0.820 29 H 0.194 0.806 30 H 0.164 0.836 31 H 0.049 0.951 32 H -0.014 1.014 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 16.838 8.160 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.045 4.045 3 N -0.070 5.070 4 N -0.233 5.233 5 C 0.023 3.977 6 C -0.099 4.099 7 C -0.129 4.129 8 C -0.033 4.033 9 Cl 0.008 6.992 10 N -0.184 5.184 11 C -0.093 4.093 12 C 0.285 3.715 13 O -0.372 6.372 14 C -0.155 4.155 15 H 0.164 0.836 16 C 0.028 3.972 17 C -0.573 4.573 18 H 0.073 0.927 19 C -0.185 4.185 20 N -0.564 5.564 21 Si 0.776 3.224 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.211 1.211 25 H 0.125 0.875 26 H 0.117 0.883 27 H 0.137 0.863 28 H 0.198 0.802 29 H 0.211 0.789 30 H 0.181 0.819 31 H 0.067 0.933 32 H 0.005 0.995 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.269 17.237 8.007 19.048 hybrid contribution 0.485 -1.679 -0.367 1.786 sum -0.784 15.557 7.641 17.350 Atomic orbital electron populations 1.20713 0.80534 1.06279 1.06038 1.26316 0.99379 0.89061 0.89734 1.74732 0.86085 1.26459 1.19742 1.47197 1.03821 1.05038 1.67216 1.19032 0.86916 0.90722 1.00999 1.21609 1.02352 0.88671 0.97316 1.22104 0.88645 1.03462 0.98655 1.22036 0.89578 0.89128 1.02605 1.98390 1.47051 1.57121 1.96596 1.67061 1.36246 1.02518 1.12528 1.22869 0.86354 1.00225 0.99884 1.22038 0.92882 0.82114 0.74495 1.90627 1.32186 1.66486 1.47883 1.22032 0.89910 0.97793 1.05782 0.83633 1.18665 0.98454 0.92189 0.87928 1.21437 1.26895 1.04191 1.04751 0.92684 1.25676 0.96415 1.01485 0.94963 1.70010 1.40618 1.37249 1.08551 0.85718 0.78836 0.79731 0.78110 1.18515 1.20421 1.21084 0.87536 0.88273 0.86255 0.80236 0.78895 0.81912 0.93306 0.99537 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.48 71.24 0.75 -0.54 16 2 C 0.15 4.06 6.93 46.83 0.32 4.39 16 3 N -0.26 -7.89 11.27 -40.84 -0.46 -8.36 16 4 N -0.42 -15.20 3.73 -301.88 -1.13 -16.32 16 5 C 0.12 3.96 6.68 38.23 0.26 4.21 16 6 C -0.07 -1.72 9.73 22.58 0.22 -1.51 16 7 C -0.11 -2.22 9.87 22.37 0.22 -2.00 16 8 C 0.13 3.51 7.27 84.72 0.62 4.13 16 9 Cl -0.02 -0.44 29.10 -2.72 -0.08 -0.52 16 10 N -0.47 -15.93 10.33 -186.18 -1.92 -17.85 16 11 C 0.07 2.41 10.52 84.83 0.89 3.31 16 12 C 0.49 20.86 7.46 87.94 0.66 21.52 16 13 O -0.50 -24.41 14.36 -3.10 -0.04 -24.46 16 14 C -0.13 -4.90 2.96 -11.74 -0.03 -4.93 16 15 H 0.15 4.94 8.14 -2.39 -0.02 4.92 16 16 C 0.07 3.10 4.49 29.85 0.13 3.23 16 17 C -0.53 -29.21 8.44 25.60 0.22 -28.99 16 18 H 0.05 3.05 7.43 -2.91 -0.02 3.03 16 19 C 0.01 0.75 5.46 84.65 0.46 1.22 16 20 N -0.92 -53.41 13.29 21.45 0.28 -53.12 16 21 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 25 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.74 8.05 -2.39 -0.02 1.72 16 27 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.18 3.45 7.70 -2.91 -0.02 3.43 16 29 H 0.19 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.16 6.79 5.37 -2.91 -0.02 6.77 16 31 H 0.05 2.22 8.04 -2.38 -0.02 2.20 16 32 H -0.01 -0.74 8.12 -2.39 -0.02 -0.76 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -70.38 308.75 4.54 -65.85 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.15 Total: 4.15 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 4.71 Total: 4.03 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -3.22 Total: -95.65 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -70.38 4.54 -65.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871953793.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.134 kcal (2) G-P(sol) polarization free energy of solvation -70.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds