Wall clock time and date at job start Tue Mar 31 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48502 * 109.46799 * 269.99672 * 3 2 1 5 5 H 1.48490 * 109.47137 * 29.99807 * 3 2 1 6 6 H 1.48505 * 109.47023 * 150.00090 * 3 2 1 7 7 C 1.37874 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47465 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47465 * 179.97438 * 10 9 7 12 12 O 1.21265 * 119.99972 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.38483 * 120.00041 * 179.97438 * 13 11 10 15 15 N 1.30839 * 125.05028 * 179.97438 * 14 13 11 16 16 C 1.35880 * 109.61677 * 180.02562 * 15 14 13 17 17 C 1.39732 * 133.39746 * 179.97438 * 16 15 14 18 18 C 1.37661 * 119.78956 * 179.72282 * 17 16 15 19 19 C 1.38825 * 120.49305 * 0.25847 * 18 17 16 20 20 Cl 1.73600 * 119.79261 * 180.02562 * 19 18 17 21 21 C 1.38028 * 120.41319 * 0.02562 * 19 18 17 22 22 C 1.38702 * 119.83935 * 359.97438 * 21 19 18 23 23 N 1.36530 * 125.04790 * 0.61161 * 14 13 11 24 24 H 0.96994 * 126.37598 * 359.34987 * 23 14 13 25 25 H 0.96998 * 119.99942 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46941 * 59.99481 * 9 7 2 27 27 H 1.09003 * 109.47251 * 299.99746 * 9 7 2 28 28 H 1.09001 * 109.46853 * 59.99566 * 10 9 7 29 29 H 1.09003 * 109.47027 * 300.00310 * 10 9 7 30 30 H 0.97003 * 119.99877 * 0.02562 * 13 11 10 31 31 H 1.08002 * 120.10892 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.74923 * 180.28336 * 18 17 16 33 33 H 1.08002 * 120.07844 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0018 14 6 1.4731 -7.3337 0.0029 15 7 2.0249 -8.5200 0.0031 16 6 1.0569 -9.4735 0.0038 17 6 1.0854 -10.8705 0.0037 18 6 -0.0951 -11.5787 0.0103 19 6 -1.3146 -10.9152 0.0115 20 17 -2.7922 -11.8264 0.0204 21 6 -1.3595 -9.5357 0.0056 22 6 -0.1795 -8.8068 -0.0010 23 7 0.1131 -7.4539 -0.0085 24 1 -0.5287 -6.7266 -0.0097 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 3.1355 -6.1344 0.0022 31 1 2.0305 -11.3932 0.0036 32 1 -0.0723 -12.6584 0.0149 33 1 -2.3112 -9.0251 0.0062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874691462.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:37 Heat of formation + Delta-G solvation = 21.516586 kcal Electronic energy + Delta-G solvation = -19597.743439 eV Core-core repulsion = 16263.711661 eV Total energy + Delta-G solvation = -3334.031778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40574 -39.91024 -37.80803 -36.31596 -34.72100 -33.76093 -33.18371 -31.31883 -30.15565 -28.88177 -26.19964 -23.58138 -22.81613 -21.94281 -21.33309 -20.27496 -18.50524 -17.66062 -17.19680 -16.70102 -16.13962 -15.85503 -15.20573 -15.00012 -14.80492 -14.55139 -14.14520 -13.85960 -13.32950 -12.75509 -12.75172 -12.35754 -12.08221 -11.50651 -11.43913 -11.20325 -11.08748 -11.05697 -10.74256 -10.25274 -10.23560 -10.14965 -10.11481 -9.69838 -9.29857 -8.56676 -8.47997 -7.96493 -6.11806 -4.17353 0.62310 1.19251 1.83206 2.13169 2.26361 2.95132 3.10374 3.24571 3.31616 3.33514 3.56835 4.24182 4.34690 4.60482 4.84866 4.90811 5.06043 5.14727 5.24133 5.32582 5.61253 5.76117 5.85991 5.88272 5.96516 6.01071 6.23739 6.39486 6.53746 6.93635 7.34191 7.53503 7.58644 7.77271 7.85657 7.89854 8.21647 8.89570 9.47709 10.99024 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038337 B = 0.002595 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.197704 B =10785.647244 C =11495.378399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.522 3.478 12 O -0.517 6.517 13 N -0.639 5.639 14 C 0.529 3.471 15 N -0.526 5.526 16 C 0.077 3.923 17 C -0.061 4.061 18 C -0.115 4.115 19 C -0.030 4.030 20 Cl -0.069 7.069 21 C -0.090 4.090 22 C 0.051 3.949 23 N -0.586 5.586 24 H 0.439 0.561 25 H 0.263 0.737 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.434 0.566 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -21.571 0.023 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.164 4.164 11 C 0.312 3.688 12 O -0.389 6.389 13 N -0.293 5.293 14 C 0.173 3.827 15 N -0.255 5.255 16 C -0.043 4.043 17 C -0.082 4.082 18 C -0.136 4.136 19 C -0.059 4.059 20 Cl -0.040 7.040 21 C -0.112 4.112 22 C -0.060 4.060 23 N -0.211 5.211 24 H 0.288 0.712 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.274 0.726 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.856 -21.552 0.019 21.569 hybrid contribution -0.373 1.451 -0.008 1.499 sum 0.483 -20.100 0.011 20.106 Atomic orbital electron populations 1.69981 1.06117 1.26899 1.49684 1.25021 0.94860 0.99408 0.94994 0.86543 0.79766 0.83206 0.78182 1.20566 1.21147 1.19777 1.21140 0.93038 0.90666 1.52146 0.92319 1.18968 0.93074 0.89241 0.98908 1.21998 1.01038 0.89471 1.03909 1.22326 0.88663 0.85167 0.72620 1.90471 1.14777 1.86315 1.47345 1.43285 1.11765 1.01149 1.73084 1.19694 0.79617 0.88086 0.95283 1.70613 1.30137 0.95173 1.29602 1.18900 0.87839 0.93887 1.03629 1.20101 0.98387 0.89636 1.00030 1.20703 0.89740 1.00324 1.02826 1.20300 0.87511 0.90878 1.07211 1.98364 1.34552 1.74036 1.97075 1.19648 0.96205 0.91574 1.03791 1.18511 0.96362 0.83653 1.07450 1.43602 1.07181 1.07358 1.62940 0.71176 0.92764 0.95576 0.95555 0.88755 0.88751 0.72558 0.84290 0.84336 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -13.98 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.04 0.86 4.26 -27.88 -0.12 0.74 16 10 C -0.12 -2.12 5.64 -27.88 -0.16 -2.27 16 11 C 0.52 8.42 7.79 -10.99 -0.09 8.33 16 12 O -0.52 -9.95 13.39 5.57 0.07 -9.88 16 13 N -0.64 -8.33 5.38 -12.59 -0.07 -8.39 16 14 C 0.53 7.78 8.71 -319.38 -2.78 4.99 16 15 N -0.53 -7.71 11.31 -11.40 -0.13 -7.84 16 16 C 0.08 1.06 7.22 -84.68 -0.61 0.45 16 17 C -0.06 -0.66 10.10 -39.23 -0.40 -1.05 16 18 C -0.11 -1.09 9.79 -39.58 -0.39 -1.48 16 19 C -0.03 -0.32 6.32 -39.44 -0.25 -0.57 16 20 Cl -0.07 -0.65 28.94 -51.86 -1.50 -2.16 16 21 C -0.09 -1.06 9.83 -39.49 -0.39 -1.45 16 22 C 0.05 0.70 7.30 -83.88 -0.61 0.09 16 23 N -0.59 -8.64 5.84 -11.08 -0.06 -8.70 16 24 H 0.44 6.67 6.34 -40.82 -0.26 6.41 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 26 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.43 4.21 8.82 -40.82 -0.36 3.85 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -31.14 308.40 -10.64 -41.78 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.12 Total: 5.14 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -6.20 Total: -4.96 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.47 Total: -50.21 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.14 -10.64 -41.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874691462.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.299 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds