Wall clock time and date at job start Tue Mar 31 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48502 * 109.46799 * 269.99672 * 3 2 1 5 5 H 1.48490 * 109.47137 * 29.99807 * 3 2 1 6 6 H 1.48505 * 109.47023 * 150.00090 * 3 2 1 7 7 C 1.37874 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00375 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47465 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47465 * 179.97438 * 10 9 7 12 12 O 1.21265 * 119.99972 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.38483 * 120.00041 * 179.97438 * 13 11 10 15 15 N 1.30839 * 125.05028 * 179.97438 * 14 13 11 16 16 C 1.35880 * 109.61677 * 180.02562 * 15 14 13 17 17 C 1.39732 * 133.39746 * 179.97438 * 16 15 14 18 18 C 1.37661 * 119.78956 * 179.72282 * 17 16 15 19 19 C 1.38825 * 120.49305 * 0.25847 * 18 17 16 20 20 Cl 1.73600 * 119.79261 * 180.02562 * 19 18 17 21 21 C 1.38028 * 120.41319 * 0.02562 * 19 18 17 22 22 C 1.38702 * 119.83935 * 359.97438 * 21 19 18 23 23 N 1.36530 * 125.04790 * 0.61161 * 14 13 11 24 24 H 0.96994 * 126.37598 * 359.34987 * 23 14 13 25 25 H 0.96998 * 119.99942 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46941 * 59.99481 * 9 7 2 27 27 H 1.09003 * 109.47251 * 299.99746 * 9 7 2 28 28 H 1.09001 * 109.46853 * 59.99566 * 10 9 7 29 29 H 1.09003 * 109.47027 * 300.00310 * 10 9 7 30 30 H 0.97003 * 119.99877 * 0.02562 * 13 11 10 31 31 H 1.08002 * 120.10892 * 0.02562 * 17 16 15 32 32 H 1.07995 * 119.74923 * 180.28336 * 18 17 16 33 33 H 1.08002 * 120.07844 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2790 -4.9672 0.0011 13 7 2.1655 -6.1344 0.0018 14 6 1.4731 -7.3337 0.0029 15 7 2.0249 -8.5200 0.0031 16 6 1.0569 -9.4735 0.0038 17 6 1.0854 -10.8705 0.0037 18 6 -0.0951 -11.5787 0.0103 19 6 -1.3146 -10.9152 0.0115 20 17 -2.7922 -11.8264 0.0204 21 6 -1.3595 -9.5357 0.0056 22 6 -0.1795 -8.8068 -0.0010 23 7 0.1131 -7.4539 -0.0085 24 1 -0.5287 -6.7266 -0.0097 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8895 30 1 3.1355 -6.1344 0.0022 31 1 2.0305 -11.3932 0.0036 32 1 -0.0723 -12.6584 0.0149 33 1 -2.3112 -9.0251 0.0062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874691462.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:36 Heat of formation + Delta-G solvation = 3.827684 kcal Electronic energy + Delta-G solvation = -19598.510488 eV Core-core repulsion = 16263.711661 eV Total energy + Delta-G solvation = -3334.798826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.44235 -41.16087 -38.73242 -37.19873 -35.87094 -35.65246 -34.21883 -33.09988 -31.07674 -29.93602 -27.92407 -24.98568 -23.77128 -23.21931 -22.51659 -21.61770 -19.56184 -19.01778 -18.35002 -18.04294 -17.32625 -17.29787 -16.49341 -16.23540 -16.12819 -15.72584 -15.28829 -15.00960 -14.54131 -14.25531 -13.99975 -13.57594 -13.32224 -12.94588 -12.84856 -12.51211 -12.50473 -12.10917 -12.01130 -11.97188 -11.73319 -11.41062 -11.27213 -11.21693 -11.14027 -10.56805 -9.49232 -8.95267 -8.19742 -6.32462 -0.32959 0.30240 0.94333 0.95319 1.21191 1.44298 1.45028 1.55954 1.82495 2.01327 2.42584 2.64155 3.15052 3.28131 3.55221 3.82072 4.04037 4.08450 4.21449 4.40606 4.47727 4.48631 4.59600 4.85547 4.97299 5.05463 5.17081 5.32990 5.49551 5.52553 5.59405 5.82828 5.89357 6.14446 6.22888 6.65702 6.75137 6.88314 7.38155 8.92534 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.038337 B = 0.002595 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.197704 B =10785.647244 C =11495.378399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.039 3.961 10 C -0.111 4.111 11 C 0.529 3.471 12 O -0.556 6.556 13 N -0.617 5.617 14 C 0.509 3.491 15 N -0.528 5.528 16 C 0.051 3.949 17 C -0.057 4.057 18 C -0.104 4.104 19 C -0.027 4.027 20 Cl -0.057 7.057 21 C -0.103 4.103 22 C 0.034 3.966 23 N -0.595 5.595 24 H 0.434 0.566 25 H 0.262 0.738 26 H -0.011 1.011 27 H -0.011 1.011 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.451 0.549 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 -23.172 0.035 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.179 1.179 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.001 3.999 10 C -0.150 4.150 11 C 0.319 3.681 12 O -0.431 6.431 13 N -0.272 5.272 14 C 0.153 3.847 15 N -0.257 5.257 16 C -0.069 4.069 17 C -0.077 4.077 18 C -0.125 4.125 19 C -0.055 4.055 20 Cl -0.028 7.028 21 C -0.124 4.124 22 C -0.076 4.076 23 N -0.218 5.218 24 H 0.282 0.718 25 H 0.071 0.929 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.294 0.706 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.854 -23.209 0.031 23.384 hybrid contribution -1.062 1.758 -0.013 2.054 sum 1.791 -21.451 0.018 21.526 Atomic orbital electron populations 1.70151 1.08183 1.27768 1.51553 1.26058 0.95655 1.03763 0.94781 0.85388 0.78779 0.78102 0.78412 1.19916 1.21557 1.17857 1.21699 0.94198 0.91405 1.50583 0.90245 1.18750 0.93732 0.92020 0.95395 1.21731 0.99471 0.87207 1.06638 1.22022 0.87973 0.85778 0.72304 1.90475 1.16399 1.86914 1.49267 1.42842 1.12327 0.99971 1.72059 1.19819 0.79808 0.88394 0.96670 1.70564 1.30576 0.95262 1.29336 1.19352 0.87538 0.95034 1.04943 1.20451 0.99952 0.88437 0.98887 1.21072 0.88699 1.01836 1.00873 1.20501 0.88547 0.90606 1.05878 1.98375 1.33954 1.73515 1.96921 1.19812 0.96000 0.92267 1.04364 1.18806 0.97264 0.83283 1.08261 1.43634 1.07241 1.07766 1.63195 0.71828 0.92928 0.99269 0.99243 0.85967 0.85950 0.70592 0.81885 0.81114 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 3 Si 0.97 42.27 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.54 -28.38 9.11 25.60 0.23 -28.15 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.04 1.92 4.26 29.85 0.13 2.05 16 10 C -0.11 -3.68 5.64 29.85 0.17 -3.51 16 11 C 0.53 17.11 7.79 87.66 0.68 17.80 16 12 O -0.56 -22.36 13.39 -2.98 -0.04 -22.40 16 13 N -0.62 -15.64 5.38 -312.13 -1.68 -17.32 16 14 C 0.51 14.90 8.71 260.29 2.27 17.17 16 15 N -0.53 -15.07 11.31 -189.99 -2.15 -17.22 16 16 C 0.05 1.34 7.22 39.42 0.28 1.62 16 17 C -0.06 -1.09 10.10 22.49 0.23 -0.86 16 18 C -0.10 -1.67 9.79 22.27 0.22 -1.46 16 19 C -0.03 -0.51 6.32 22.36 0.14 -0.37 16 20 Cl -0.06 -0.96 28.94 -2.72 -0.08 -1.04 16 21 C -0.10 -2.35 9.83 22.33 0.22 -2.13 16 22 C 0.03 0.93 7.30 38.76 0.28 1.21 16 23 N -0.59 -18.00 5.84 -188.98 -1.10 -19.10 16 24 H 0.43 13.93 6.34 -92.71 -0.59 13.35 16 25 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 26 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 27 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 28 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 29 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.45 7.96 8.82 -92.71 -0.82 7.14 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -69.75 308.40 2.35 -67.40 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.23 Total: 18.15 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.31 Total: 3.57 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -4.65 Total: -109.98 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.04 Total: -22.40 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -69.75 2.35 -67.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874691462.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.226 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds