Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34796 * 116.99752 * 179.97438 * 11 10 9 13 13 O 1.21543 * 120.00353 * 0.02562 * 12 11 10 14 14 C 1.47192 * 119.99436 * 179.97438 * 12 11 10 15 15 C 1.36398 * 122.55276 * 179.97438 * 14 12 11 16 16 S 1.71014 * 109.00867 * 180.02562 * 15 14 12 17 17 C 1.75966 * 90.64435 * 0.02562 * 16 15 14 18 18 C 1.47380 * 125.22353 * 180.02562 * 17 16 15 19 19 N 1.31598 * 125.86118 * 179.66338 * 18 17 16 20 20 C 1.33634 * 109.24663 * 179.83196 * 19 18 17 21 21 C 1.35004 * 108.41823 * 0.43473 * 20 19 18 22 22 N 1.36590 * 125.85839 * 359.97438 * 18 17 16 23 23 H 0.97000 * 126.50407 * 359.97438 * 22 18 17 24 24 N 1.29931 * 109.55510 * 359.73479 * 17 16 15 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.07995 * 125.49234 * 359.97343 * 15 14 12 31 31 H 1.07998 * 125.78958 * 180.14113 * 20 19 18 32 32 H 1.07996 * 126.46308 * 179.75939 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2534 -6.0501 0.0036 13 8 3.4672 -5.9865 0.0040 14 6 1.5851 -7.3615 0.0047 15 6 2.2762 -8.5374 0.0047 16 16 1.1645 -9.8369 0.0054 17 6 -0.1854 -8.7081 0.0050 18 6 -1.6099 -9.0864 0.0059 19 7 -2.6287 -8.2535 0.0118 20 6 -3.7683 -8.9515 0.0069 21 6 -3.4630 -10.2665 0.0072 22 7 -2.0990 -10.3617 0.0066 23 1 -1.5777 -11.1797 0.0063 24 7 0.2664 -7.4899 0.0100 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 3.3519 -8.6325 0.0034 31 1 -4.7644 -8.5343 0.0077 32 1 -4.1640 -11.0881 0.0076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884986183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = 19.730743 kcal Electronic energy + Delta-G solvation = -19416.827462 eV Core-core repulsion = 16084.761951 eV Total energy + Delta-G solvation = -3332.065511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.29701 -40.50621 -38.98075 -36.09940 -33.26409 -32.96465 -31.99070 -30.22837 -29.22895 -26.65188 -24.99803 -23.69801 -22.09640 -21.11733 -20.73607 -19.63986 -19.35420 -18.16755 -16.69995 -16.47000 -16.16618 -15.87730 -15.57601 -15.16284 -14.53269 -14.45439 -14.37954 -14.02793 -13.52974 -13.08626 -12.89880 -12.37141 -12.26994 -11.19444 -10.97567 -10.72923 -10.71912 -10.57661 -10.43481 -10.34267 -10.26689 -10.13876 -9.70888 -9.58619 -9.55998 -9.20776 -8.44015 -8.36929 -6.02206 -4.06821 -0.15084 0.60736 1.01670 1.26156 2.02353 2.31054 2.89832 3.12447 3.26616 3.32785 3.39824 3.44788 3.73892 4.27985 4.45904 4.62063 4.80164 4.94759 5.01872 5.10175 5.33844 5.48264 5.65980 6.10519 6.14650 6.31220 6.69807 6.72774 6.88890 7.15947 7.64895 7.69062 7.73265 7.93445 8.17494 8.31742 8.99045 9.56946 11.09245 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.003213 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.443906 B = 8712.157769 C =10099.152264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.074 3.926 11 O -0.328 6.328 12 C 0.536 3.464 13 O -0.508 6.508 14 C 0.044 3.956 15 C -0.201 4.201 16 S 0.180 5.820 17 C 0.118 3.882 18 C 0.259 3.741 19 N -0.422 5.422 20 C -0.021 4.021 21 C -0.028 4.028 22 N -0.561 5.561 23 H 0.421 0.579 24 N -0.370 5.370 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.201 0.799 31 H 0.181 0.819 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 -28.454 -0.003 28.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.001 3.999 11 O -0.243 6.243 12 C 0.377 3.623 13 O -0.397 6.397 14 C -0.092 4.092 15 C -0.344 4.344 16 S 0.436 5.564 17 C -0.160 4.160 18 C -0.003 4.003 19 N -0.142 5.142 20 C -0.172 4.172 21 C -0.164 4.164 22 N -0.166 5.166 23 H 0.259 0.741 24 N -0.084 5.084 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.218 0.782 31 H 0.198 0.802 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.543 -27.981 0.013 28.204 hybrid contribution 1.133 0.515 -0.005 1.245 sum -2.409 -27.466 0.008 27.571 Atomic orbital electron populations 1.69997 1.06056 1.26805 1.49747 1.24990 0.94905 0.99339 0.94974 0.86423 0.80012 0.83259 0.77653 1.19632 1.20869 1.20863 1.21009 0.93152 0.90077 1.52121 0.92220 1.19183 0.94175 0.88748 0.99208 1.23771 0.96540 0.78543 1.01041 1.86751 1.41060 1.15015 1.81439 1.19762 0.84828 0.84311 0.73360 1.90847 1.14149 1.87955 1.46798 1.19644 0.87486 0.93220 1.08888 1.26917 1.06949 0.94718 1.05767 1.83526 0.96817 1.10028 1.66027 1.23972 0.93646 0.90485 1.07927 1.19426 0.90462 0.80328 1.10115 1.70621 0.97049 1.31758 1.14803 1.22628 0.97960 0.89717 1.06927 1.22992 0.83084 1.00710 1.09605 1.43348 1.07793 1.08375 1.57091 0.74098 1.66867 1.11364 1.19927 1.10238 0.92782 0.95133 0.95141 0.92071 0.92082 0.78201 0.80209 0.79490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -15.28 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.02 0.66 5.35 -27.88 -0.15 0.52 16 10 C 0.07 1.74 5.42 37.16 0.20 1.94 16 11 O -0.33 -7.43 10.14 -40.75 -0.41 -7.85 16 12 C 0.54 10.52 7.94 34.37 0.27 10.80 16 13 O -0.51 -10.28 16.47 -19.30 -0.32 -10.60 16 14 C 0.04 0.70 6.68 -84.61 -0.57 0.13 16 15 C -0.20 -2.28 10.63 30.07 0.32 -1.96 16 16 S 0.18 1.44 23.17 -107.50 -2.49 -1.05 16 17 C 0.12 1.52 7.47 -14.64 -0.11 1.41 16 18 C 0.26 3.13 8.05 -154.62 -1.25 1.89 16 19 N -0.42 -6.16 11.28 -11.30 -0.13 -6.28 16 20 C -0.02 -0.21 11.84 -17.92 -0.21 -0.42 16 21 C -0.03 -0.18 12.03 -16.52 -0.20 -0.37 16 22 N -0.56 -3.97 6.22 -10.63 -0.07 -4.04 16 23 H 0.42 1.42 8.96 -40.82 -0.37 1.05 16 24 N -0.37 -6.26 10.56 -8.03 -0.08 -6.35 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.20 1.83 8.01 -52.49 -0.42 1.41 16 31 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.19 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -37.24 313.65 -8.02 -45.26 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -2.86 Total: -4.27 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.10 Total: 0.00 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.46 Total: -43.16 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.73 Total: -18.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.49 Total: -1.05 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.24 -8.02 -45.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884986183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.987 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds