Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46691 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46740 * 299.99561 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99919 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34796 * 116.99752 * 179.97438 * 11 10 9 13 13 O 1.21543 * 120.00353 * 0.02562 * 12 11 10 14 14 C 1.47192 * 119.99436 * 179.97438 * 12 11 10 15 15 C 1.36398 * 122.55276 * 179.97438 * 14 12 11 16 16 S 1.71014 * 109.00867 * 180.02562 * 15 14 12 17 17 C 1.75966 * 90.64435 * 0.02562 * 16 15 14 18 18 C 1.47380 * 125.22353 * 180.02562 * 17 16 15 19 19 N 1.31598 * 125.86118 * 179.66338 * 18 17 16 20 20 C 1.33634 * 109.24663 * 179.83196 * 19 18 17 21 21 C 1.35004 * 108.41823 * 0.43473 * 20 19 18 22 22 N 1.36590 * 125.85839 * 359.97438 * 18 17 16 23 23 H 0.97000 * 126.50407 * 359.97438 * 22 18 17 24 24 N 1.29931 * 109.55510 * 359.73479 * 17 16 15 25 25 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 27 27 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 28 28 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 30 30 H 1.07995 * 125.49234 * 359.97343 * 15 14 12 31 31 H 1.07998 * 125.78958 * 180.14113 * 20 19 18 32 32 H 1.07996 * 126.46308 * 179.75939 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2534 -6.0501 0.0036 13 8 3.4672 -5.9865 0.0040 14 6 1.5851 -7.3615 0.0047 15 6 2.2762 -8.5374 0.0047 16 16 1.1645 -9.8369 0.0054 17 6 -0.1854 -8.7081 0.0050 18 6 -1.6099 -9.0864 0.0059 19 7 -2.6287 -8.2535 0.0118 20 6 -3.7683 -8.9515 0.0069 21 6 -3.4630 -10.2665 0.0072 22 7 -2.0990 -10.3617 0.0066 23 1 -1.5777 -11.1797 0.0063 24 7 0.2664 -7.4899 0.0100 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5576 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8719 -3.6036 0.8927 29 1 2.8719 -3.6052 -0.8873 30 1 3.3519 -8.6325 0.0034 31 1 -4.7644 -8.5343 0.0077 32 1 -4.1640 -11.0881 0.0076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884986183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = -7.697052 kcal Electronic energy + Delta-G solvation = -19418.016820 eV Core-core repulsion = 16084.761951 eV Total energy + Delta-G solvation = -3333.254870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.99071 -41.83052 -40.27610 -37.77598 -35.46816 -33.69467 -32.93300 -32.30908 -30.05699 -27.99340 -26.67617 -25.01160 -22.97393 -22.77007 -21.98533 -20.79751 -20.19416 -19.20451 -18.50548 -17.75049 -17.72016 -17.54890 -16.54120 -16.50413 -16.10826 -15.55098 -15.16738 -14.78906 -14.75073 -14.47394 -14.39852 -14.28275 -13.33588 -13.19518 -13.02997 -12.64330 -12.61164 -12.09203 -11.64593 -11.54024 -11.41795 -11.36157 -11.11488 -11.10951 -11.04590 -10.63834 -10.49282 -9.16028 -8.27132 -6.42044 -1.03394 -0.20135 0.10278 0.19795 1.17556 1.39854 1.42186 1.55037 1.60420 1.77963 1.85485 2.26423 2.39612 2.95453 3.06534 3.33925 3.82350 3.88825 4.08075 4.17715 4.17808 4.35528 4.43984 4.59131 4.65072 4.95317 5.15289 5.41586 5.41873 5.65180 5.70306 6.02563 6.11607 6.33529 6.63041 6.72197 7.00615 7.27890 8.86247 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.003213 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.443906 B = 8712.157769 C =10099.152264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.070 0.930 9 C 0.031 3.969 10 C 0.089 3.911 11 O -0.352 6.352 12 C 0.534 3.466 13 O -0.522 6.522 14 C 0.001 3.999 15 C -0.196 4.196 16 S 0.337 5.663 17 C 0.089 3.911 18 C 0.225 3.775 19 N -0.489 5.489 20 C -0.062 4.062 21 C 0.018 3.982 22 N -0.539 5.539 23 H 0.441 0.559 24 N -0.434 5.434 25 H 0.268 0.732 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.224 0.776 31 H 0.191 0.809 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 -31.728 -0.005 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.197 4.197 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.016 3.984 11 O -0.268 6.268 12 C 0.377 3.623 13 O -0.413 6.413 14 C -0.134 4.134 15 C -0.339 4.339 16 S 0.595 5.405 17 C -0.188 4.188 18 C -0.037 4.037 19 N -0.210 5.210 20 C -0.212 4.212 21 C -0.119 4.119 22 N -0.146 5.146 23 H 0.283 0.717 24 N -0.149 5.149 25 H 0.077 0.923 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.240 0.760 31 H 0.208 0.792 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.669 -31.321 0.011 31.435 hybrid contribution 0.744 1.225 -0.003 1.433 sum -1.925 -30.096 0.008 30.158 Atomic orbital electron populations 1.70141 1.08066 1.28289 1.50320 1.26079 0.95875 1.03758 0.93967 0.85173 0.78883 0.77558 0.78032 1.18286 1.19981 1.19972 1.21390 0.93788 0.90868 1.52588 0.91223 1.18984 0.94366 0.90957 0.96361 1.23303 0.95099 0.78510 1.01506 1.86730 1.41932 1.15658 1.82450 1.20394 0.84922 0.84645 0.72347 1.90803 1.14486 1.88216 1.47755 1.19209 0.88041 0.92329 1.13849 1.27407 1.08993 0.94989 1.02492 1.82894 0.91196 1.04719 1.61706 1.24282 0.95623 0.91334 1.07564 1.19340 0.89982 0.81885 1.12455 1.70473 0.99289 1.34824 1.16446 1.23064 0.97606 0.91452 1.09113 1.23761 0.83071 1.00613 1.04500 1.43277 1.08228 1.07586 1.55488 0.71703 1.66757 1.12183 1.23284 1.12708 0.92313 0.98028 0.98040 0.91487 0.91496 0.75972 0.79167 0.74114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.87 13.29 21.45 0.28 -58.59 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.98 45.48 29.54 68.60 2.03 47.51 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.55 -32.92 9.11 25.60 0.23 -32.69 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.92 16 9 C 0.03 1.81 5.35 29.85 0.16 1.97 16 10 C 0.09 4.44 5.42 71.98 0.39 4.83 16 11 O -0.35 -17.13 10.14 -57.08 -0.58 -17.71 16 12 C 0.53 22.00 7.94 70.17 0.56 22.56 16 13 O -0.52 -21.69 16.47 19.69 0.32 -21.36 16 14 C 0.00 0.04 6.68 40.97 0.27 0.31 16 15 C -0.20 -4.07 10.63 67.39 0.72 -3.35 16 16 S 0.34 4.23 23.17 -56.49 -1.31 2.92 16 17 C 0.09 2.26 7.47 87.38 0.65 2.91 16 18 C 0.22 5.35 8.05 136.30 1.10 6.45 16 19 N -0.49 -14.87 11.28 -189.66 -2.14 -17.01 16 20 C -0.06 -1.20 11.84 83.67 0.99 -0.21 16 21 C 0.02 0.17 12.03 83.18 1.00 1.17 16 22 N -0.54 -6.04 6.22 -187.54 -1.17 -7.20 16 23 H 0.44 1.00 8.96 -92.71 -0.83 0.17 16 24 N -0.43 -15.42 10.56 -179.32 -1.89 -17.31 16 25 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.22 3.42 8.01 -2.91 -0.02 3.40 16 31 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.24 -0.50 8.06 -2.91 -0.02 -0.52 16 Total: -1.00 -89.30 313.65 2.43 -86.87 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: 0.35 Total: -2.63 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 6.53 Total: 4.53 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.91 Total: -100.11 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.25 Total: -39.07 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.31 Total: 2.92 kcal Total: -89.30 2.43 -86.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884986183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.169 kcal (2) G-P(sol) polarization free energy of solvation -89.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds