Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99707 * 2 1 4 4 H 1.48508 * 109.46623 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47072 * 300.00299 * 3 2 1 6 6 H 1.48500 * 109.47183 * 60.00507 * 3 2 1 7 7 C 1.38797 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00101 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00086 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47014 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00188 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99764 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47056 * 179.97438 * 14 13 11 16 16 C 1.40075 * 119.02547 * 90.00382 * 15 14 13 17 17 C 1.35594 * 121.94193 * 180.25975 * 16 15 14 18 18 C 1.40843 * 119.39208 * 359.49690 * 17 16 15 19 19 N 1.31010 * 138.56646 * 180.18278 * 18 17 16 20 20 O 1.21472 * 109.09162 * 180.25020 * 19 18 17 21 21 N 1.21473 * 116.28370 * 0.02562 * 20 19 18 22 22 C 1.31015 * 109.09024 * 359.97438 * 21 20 19 23 23 C 1.35596 * 119.03054 * 269.98081 * 15 14 13 24 24 H 0.97003 * 120.00290 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47123 * 60.00013 * 10 9 7 26 26 H 1.08995 * 109.47280 * 300.00136 * 10 9 7 27 27 H 0.97002 * 119.99817 * 359.97438 * 13 11 10 28 28 H 1.09003 * 109.47046 * 59.99908 * 14 13 11 29 29 H 1.08995 * 109.47337 * 300.00044 * 14 13 11 30 30 H 1.08002 * 119.02537 * 359.97305 * 16 15 14 31 31 H 1.08000 * 120.30467 * 179.72038 * 17 16 15 32 32 H 1.08001 * 120.30270 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0008 15 6 3.4850 -8.6837 -0.0009 16 6 4.0056 -9.1207 1.2238 17 6 5.0464 -9.9871 1.2927 18 6 5.6197 -10.4748 0.1023 19 7 6.5827 -11.2838 -0.2646 20 8 6.6282 -11.3229 -1.4778 21 7 5.8155 -10.6404 -2.0688 22 6 5.0678 -10.0119 -1.1956 23 6 3.9887 -9.1069 -1.1866 24 1 -0.4851 0.8400 0.0004 25 1 3.1245 -3.7313 0.8895 26 1 3.1245 -3.7313 -0.8905 27 1 3.8010 -6.1834 -0.0004 28 1 1.7222 -7.8752 -0.8910 29 1 1.7216 -7.8750 0.8889 30 1 3.5681 -8.7531 2.1403 31 1 5.4298 -10.3032 2.2516 32 1 3.5662 -8.7533 -2.1155 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889870943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = 100.846731 kcal Electronic energy + Delta-G solvation = -19254.127436 eV Core-core repulsion = 15925.579378 eV Total energy + Delta-G solvation = -3328.548058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.03282 -39.93960 -38.84570 -35.34972 -35.07638 -33.23954 -32.46609 -31.81857 -29.72993 -27.34374 -25.62553 -25.47776 -23.64268 -21.78125 -20.54929 -19.30392 -19.29298 -18.40974 -17.91892 -16.63424 -16.32000 -15.61274 -15.32992 -14.91567 -14.84761 -14.83746 -14.05935 -13.41392 -13.35924 -13.22694 -13.10971 -12.69705 -12.55416 -12.26419 -12.12937 -11.87344 -11.59699 -11.09818 -11.06023 -10.79771 -10.32864 -9.85000 -9.55432 -9.13310 -9.07539 -9.02260 -8.28627 -6.54777 -6.25593 -3.96550 -0.48216 0.60286 1.48020 2.63306 2.68216 2.97441 3.00729 3.07256 3.19219 3.26739 3.31673 3.32916 3.70118 4.02960 4.16615 4.20520 4.32494 4.63249 4.77106 5.04056 5.08652 5.10134 5.14654 5.33747 5.44185 5.52524 5.65354 5.80214 5.85015 5.90734 6.07779 6.39685 7.53480 7.56725 8.03863 8.31693 8.47049 9.20119 10.81859 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002549 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.179773 B =10980.898992 C =11320.739835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.737 5.737 14 C 0.158 3.842 15 C -0.067 4.067 16 C -0.067 4.067 17 C -0.070 4.070 18 C 0.020 3.980 19 N -0.348 5.348 20 O 0.378 5.622 21 N -0.342 5.342 22 C 0.016 3.984 23 C -0.047 4.047 24 H 0.268 0.732 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.400 0.600 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.298 -20.697 1.301 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.393 5.393 14 C 0.035 3.965 15 C -0.071 4.071 16 C -0.089 4.089 17 C -0.091 4.091 18 C -0.133 4.133 19 N -0.069 5.069 20 O 0.139 5.861 21 N -0.063 5.063 22 C -0.136 4.136 23 C -0.068 4.068 24 H 0.078 0.922 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.234 0.766 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.889 -21.579 0.725 23.748 hybrid contribution 1.910 1.775 0.401 2.638 sum 11.799 -19.804 1.125 23.080 Atomic orbital electron populations 1.70021 1.05956 1.27407 1.46869 1.24997 0.95036 0.99071 0.94497 0.86111 0.79583 0.81842 0.77928 1.19608 1.20551 1.20545 1.22899 0.94935 0.91577 1.58946 0.90851 1.85404 1.04792 0.96400 1.96733 1.23536 1.06701 0.95109 1.05076 1.20353 0.86449 0.86194 0.74987 1.90719 1.15289 1.85474 1.47253 1.46056 1.10216 1.04599 1.78418 1.20228 0.92301 0.79700 1.04291 1.19779 0.97346 0.97675 0.92325 1.20997 0.94513 0.94938 0.98435 1.19952 0.96245 0.97808 0.95067 1.22964 0.94906 0.97714 0.97689 1.75240 1.18692 1.18667 0.94344 1.85392 1.41212 1.46701 1.12809 1.75260 1.02904 1.07235 1.20855 1.22863 1.00480 1.01760 0.88526 1.19928 0.92650 0.94533 0.99696 0.92196 0.89083 0.89119 0.76581 0.89922 0.89685 0.83286 0.83358 0.83161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 11 C 0.53 9.02 7.85 -10.98 -0.09 8.93 16 12 O -0.51 -10.76 15.86 5.56 0.09 -10.67 16 13 N -0.74 -8.30 5.55 -61.47 -0.34 -8.64 16 14 C 0.16 1.44 5.74 -5.20 -0.03 1.41 16 15 C -0.07 -0.48 5.22 -104.88 -0.55 -1.03 16 16 C -0.07 -0.40 9.52 -39.84 -0.38 -0.78 16 17 C -0.07 -0.47 10.08 -39.54 -0.40 -0.87 16 18 C 0.02 0.18 7.76 -83.03 -0.64 -0.46 16 19 N -0.35 -3.47 12.29 31.88 0.39 -3.08 16 20 O 0.38 3.71 11.67 26.94 0.31 4.02 16 21 N -0.34 -3.56 12.29 31.88 0.39 -3.17 16 22 C 0.02 0.15 7.76 -83.03 -0.64 -0.49 16 23 C -0.05 -0.38 9.65 -39.54 -0.38 -0.76 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 26 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 27 H 0.40 3.55 8.46 -40.82 -0.35 3.21 16 28 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 29 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -34.06 308.19 -6.54 -40.61 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -2.84 Total: -1.58 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.69 Total: -9.38 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.18 Total: -39.89 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: 0.40 Total: -6.65 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.06 -6.54 -40.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889870943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.453 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds