Wall clock time and date at job start Tue Mar 31 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99707 * 2 1 4 4 H 1.48508 * 109.46623 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47072 * 300.00299 * 3 2 1 6 6 H 1.48500 * 109.47183 * 60.00507 * 3 2 1 7 7 C 1.38797 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00101 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00086 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47014 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00188 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99764 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47056 * 179.97438 * 14 13 11 16 16 C 1.40075 * 119.02547 * 90.00382 * 15 14 13 17 17 C 1.35594 * 121.94193 * 180.25975 * 16 15 14 18 18 C 1.40843 * 119.39208 * 359.49690 * 17 16 15 19 19 N 1.31010 * 138.56646 * 180.18278 * 18 17 16 20 20 O 1.21472 * 109.09162 * 180.25020 * 19 18 17 21 21 N 1.21473 * 116.28370 * 0.02562 * 20 19 18 22 22 C 1.31015 * 109.09024 * 359.97438 * 21 20 19 23 23 C 1.35596 * 119.03054 * 269.98081 * 15 14 13 24 24 H 0.97003 * 120.00290 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47123 * 60.00013 * 10 9 7 26 26 H 1.08995 * 109.47280 * 300.00136 * 10 9 7 27 27 H 0.97002 * 119.99817 * 359.97438 * 13 11 10 28 28 H 1.09003 * 109.47046 * 59.99908 * 14 13 11 29 29 H 1.08995 * 109.47337 * 300.00044 * 14 13 11 30 30 H 1.08002 * 119.02537 * 359.97305 * 16 15 14 31 31 H 1.08000 * 120.30467 * 179.72038 * 17 16 15 32 32 H 1.08001 * 120.30270 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7150 -0.0008 15 6 3.4850 -8.6837 -0.0009 16 6 4.0056 -9.1207 1.2238 17 6 5.0464 -9.9871 1.2927 18 6 5.6197 -10.4748 0.1023 19 7 6.5827 -11.2838 -0.2646 20 8 6.6282 -11.3229 -1.4778 21 7 5.8155 -10.6404 -2.0688 22 6 5.0678 -10.0119 -1.1956 23 6 3.9887 -9.1069 -1.1866 24 1 -0.4851 0.8400 0.0004 25 1 3.1245 -3.7313 0.8895 26 1 3.1245 -3.7313 -0.8905 27 1 3.8010 -6.1834 -0.0004 28 1 1.7222 -7.8752 -0.8910 29 1 1.7216 -7.8750 0.8889 30 1 3.5681 -8.7531 2.1403 31 1 5.4298 -10.3032 2.2516 32 1 3.5662 -8.7533 -2.1155 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889870943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:16 Heat of formation + Delta-G solvation = 76.917845 kcal Electronic energy + Delta-G solvation = -19255.165071 eV Core-core repulsion = 15925.579378 eV Total energy + Delta-G solvation = -3329.585693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.72962 -40.88038 -39.84325 -36.24182 -35.85468 -34.57132 -34.08200 -32.52037 -31.01337 -28.30883 -27.58818 -26.23052 -24.41213 -22.42113 -21.80103 -20.12297 -20.02158 -19.65148 -19.09300 -17.85888 -17.46032 -16.86702 -16.63448 -16.22382 -15.80917 -15.75036 -15.45648 -14.68540 -14.47666 -14.16818 -14.00989 -13.87953 -13.35876 -13.22927 -13.14147 -12.97701 -12.90235 -12.84097 -12.58448 -12.20231 -11.70087 -11.17804 -11.14637 -10.73965 -10.24771 -10.15338 -9.67014 -8.63954 -8.33674 -6.10713 -1.12085 -0.03932 0.81572 1.29511 1.42251 1.49012 1.59467 1.63560 1.99501 2.06020 2.28417 2.32287 2.53945 2.68267 3.00835 3.34549 3.36242 3.56716 3.74861 4.02036 4.07907 4.17487 4.33021 4.42479 4.55976 4.60272 4.70007 4.81708 4.98498 5.22959 5.33891 5.39849 5.44005 6.21474 6.47627 7.08403 7.23748 7.33219 8.75582 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002549 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.179773 B =10980.898992 C =11320.739835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.132 4.132 11 C 0.539 3.461 12 O -0.560 6.560 13 N -0.710 5.710 14 C 0.159 3.841 15 C -0.052 4.052 16 C -0.057 4.057 17 C -0.070 4.070 18 C 0.014 3.986 19 N -0.361 5.361 20 O 0.372 5.628 21 N -0.359 5.359 22 C 0.004 3.996 23 C -0.053 4.053 24 H 0.271 0.729 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.416 0.584 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.068 -20.809 2.226 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.283 4.283 11 C 0.325 3.675 12 O -0.438 6.438 13 N -0.365 5.365 14 C 0.036 3.964 15 C -0.057 4.057 16 C -0.079 4.079 17 C -0.090 4.090 18 C -0.138 4.138 19 N -0.085 5.085 20 O 0.136 5.864 21 N -0.080 5.080 22 C -0.148 4.148 23 C -0.074 4.074 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.253 0.747 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.194 0.806 31 H 0.191 0.809 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.723 -21.739 1.638 24.753 hybrid contribution 1.396 1.670 0.121 2.180 sum 13.119 -20.069 1.759 24.041 Atomic orbital electron populations 1.70180 1.07917 1.28507 1.48150 1.26099 0.95947 1.03266 0.93853 0.84929 0.78638 0.76517 0.78012 1.18067 1.20102 1.19971 1.23234 0.95329 0.92084 1.58583 0.89953 1.85554 1.10524 0.99178 1.97042 1.23389 1.03561 0.94441 1.06899 1.19957 0.86130 0.86415 0.75032 1.90713 1.17244 1.85941 1.49894 1.45746 1.10376 1.04416 1.75963 1.20326 0.93012 0.78342 1.04691 1.19599 0.96402 0.96971 0.92698 1.21245 0.93832 0.94092 0.98775 1.20285 0.96099 0.97506 0.95152 1.23385 0.94602 0.97392 0.98468 1.75202 1.19426 1.19398 0.94433 1.85374 1.41318 1.46893 1.12850 1.75213 1.03475 1.07837 1.21517 1.23111 1.00851 1.02066 0.88736 1.20039 0.92436 0.94512 1.00447 0.92027 0.86996 0.87353 0.74730 0.90162 0.88871 0.80634 0.80927 0.82539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.97 13.22 21.65 0.29 -54.69 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 42.78 29.55 68.60 2.03 44.81 16 4 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.24 9.50 67.95 0.65 -29.59 16 8 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 9 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 10 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 11 C 0.54 17.36 7.85 87.66 0.69 18.05 16 12 O -0.56 -23.33 15.86 -3.02 -0.05 -23.38 16 13 N -0.71 -13.98 5.55 -466.79 -2.59 -16.57 16 14 C 0.16 2.46 5.74 85.63 0.49 2.95 16 15 C -0.05 -0.60 5.22 -20.03 -0.10 -0.70 16 16 C -0.06 -0.48 9.52 22.10 0.21 -0.27 16 17 C -0.07 -0.71 10.08 22.30 0.22 -0.49 16 18 C 0.01 0.23 7.76 42.63 0.33 0.56 16 19 N -0.36 -6.93 12.29 -57.45 -0.71 -7.63 16 20 O 0.37 7.24 11.67 139.34 1.63 8.87 16 21 N -0.36 -7.34 12.29 -57.43 -0.71 -8.05 16 22 C 0.00 0.08 7.76 42.62 0.33 0.41 16 23 C -0.05 -0.75 9.65 22.30 0.22 -0.53 16 24 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 25 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 26 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 27 H 0.42 5.85 8.46 -92.71 -0.78 5.07 16 28 H 0.08 1.37 8.05 -2.39 -0.02 1.35 16 29 H 0.09 1.41 8.07 -2.39 -0.02 1.39 16 30 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 32 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -75.86 308.19 3.06 -72.80 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 0.39 Total: 5.76 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 3.94 Total: -12.76 kcal Atomic # 7 Polarization: -83.22 SS G_CDS: -3.72 Total: -86.94 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 1.58 Total: -14.51 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -75.86 3.06 -72.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889870943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.723 kcal (2) G-P(sol) polarization free energy of solvation -75.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds