Wall clock time and date at job start Tue Mar 31 2020 07:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38063 * 126.29267 * 2 1 4 4 C 1.47405 * 126.41802 * 359.97438 * 3 2 1 5 5 O 1.21622 * 119.99935 * 0.30116 * 4 3 2 6 6 N 1.34772 * 120.00193 * 180.30371 * 4 3 2 7 7 C 1.39448 * 120.00115 * 179.97438 * 6 4 3 8 8 C 1.35901 * 127.78887 * 179.70391 * 7 6 4 9 9 N 1.31214 * 115.49631 * 179.79074 * 8 7 6 10 10 N 1.28157 * 118.79656 * 0.54340 * 9 8 7 11 11 S 1.69872 * 106.60384 * 359.70880 * 10 9 8 12 12 C 1.41293 * 107.16532 * 180.25833 * 3 2 1 13 13 N 1.30443 * 108.02598 * 359.74099 * 12 3 2 14 14 N 1.34273 * 126.29222 * 179.81210 * 2 1 3 15 15 C 1.46491 * 125.75298 * 0.02562 * 14 2 1 16 16 C 1.50702 * 109.46957 * 269.71248 * 15 14 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 H 1.09001 * 109.47342 * 270.18270 * 1 2 3 25 25 H 1.09002 * 109.46966 * 30.18650 * 1 2 3 26 26 H 1.09001 * 109.47351 * 150.18395 * 1 2 3 27 27 H 0.96999 * 120.00008 * 0.02562 * 6 4 3 28 28 H 1.08001 * 122.25580 * 359.97438 * 8 7 6 29 29 H 1.08007 * 125.98920 * 179.77073 * 12 3 2 30 30 H 1.09004 * 109.47166 * 149.71514 * 15 14 2 31 31 H 1.08994 * 109.47507 * 29.71220 * 15 14 2 32 32 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1128 0.0000 4 6 1.8861 2.5202 -0.0005 5 8 0.6997 2.7878 0.0045 6 7 2.8002 3.5105 -0.0066 7 6 2.3858 4.8420 -0.0077 8 6 3.1637 5.9563 -0.0079 9 7 2.5160 7.0974 -0.0133 10 7 1.2345 7.0799 -0.0072 11 16 0.7715 5.4455 -0.0012 12 6 3.6591 0.6498 -0.0061 13 7 3.6341 -0.6544 -0.0039 14 7 2.3018 -1.0822 0.0035 15 6 1.8502 -2.4758 0.0076 16 6 1.7016 -2.9516 1.4298 17 1 1.9212 -2.2826 2.2488 18 6 1.2793 -4.2390 1.6855 19 7 1.0116 -5.0535 0.6883 20 14 1.0878 -4.8262 3.4484 21 1 1.4487 -3.7263 4.3785 22 1 -0.3212 -5.2316 3.6848 23 1 1.9830 -5.9876 3.6834 24 1 -0.3634 0.0033 1.0277 25 1 -0.3633 0.8883 -0.5167 26 1 -0.3634 -0.8916 -0.5110 27 1 3.7464 3.2972 -0.0111 28 1 4.2426 5.9061 -0.0069 29 1 4.5451 1.2675 -0.0112 30 1 2.5826 -3.0966 -0.5085 31 1 0.8893 -2.5479 -0.5019 32 1 0.7149 -5.9593 0.8682 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890090582.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:00 Heat of formation + Delta-G solvation = 99.169301 kcal Electronic energy + Delta-G solvation = -20048.818474 eV Core-core repulsion = 16752.490428 eV Total energy + Delta-G solvation = -3296.328046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24438 -40.35322 -39.42073 -35.51067 -34.07394 -32.33240 -31.61528 -30.65670 -27.87254 -26.96317 -26.05513 -23.71215 -22.77552 -21.62831 -20.74408 -19.33569 -18.59738 -17.72071 -17.06415 -16.85522 -15.91671 -15.53480 -14.96561 -14.85253 -14.65945 -14.47306 -14.22929 -13.49302 -12.90411 -12.63241 -12.49576 -12.32028 -12.04325 -11.85620 -11.82050 -11.68811 -11.24326 -11.01710 -10.72458 -10.45355 -10.26145 -10.07386 -9.71022 -9.64327 -8.91085 -8.84110 -8.82631 -8.24229 -6.45638 -4.54310 0.05261 0.75953 1.63424 1.68987 2.22268 2.49580 2.55031 3.09324 3.12123 3.18304 3.25162 3.43292 4.14282 4.26821 4.46578 4.69985 4.90664 4.92989 5.13871 5.30171 5.46812 5.56745 5.76088 5.92093 6.21373 6.26979 6.52537 6.72854 6.83255 6.91696 7.37312 7.55950 7.62720 7.67850 7.78941 8.09950 8.50719 9.13595 10.62664 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.033837 B = 0.003275 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.309542 B = 8548.684811 C = 8777.442547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.180 3.820 3 C -0.337 4.337 4 C 0.598 3.402 5 O -0.513 6.513 6 N -0.617 5.617 7 C 0.055 3.945 8 C -0.089 4.089 9 N -0.203 5.203 10 N -0.260 5.260 11 S 0.342 5.658 12 C 0.062 3.938 13 N -0.287 5.287 14 N -0.308 5.308 15 C 0.249 3.751 16 C -0.544 4.544 17 H 0.066 0.934 18 C 0.069 3.931 19 N -0.888 5.888 20 Si 0.909 3.091 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.424 0.576 28 H 0.191 0.809 29 H 0.179 0.821 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 14.281 -2.486 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.041 3.959 3 C -0.353 4.353 4 C 0.390 3.610 5 O -0.388 6.388 6 N -0.263 5.263 7 C -0.182 4.182 8 C -0.258 4.258 9 N -0.070 5.070 10 N -0.243 5.243 11 S 0.474 5.526 12 C -0.126 4.126 13 N -0.106 5.106 14 N -0.084 5.084 15 C 0.132 3.868 16 C -0.582 4.582 17 H 0.085 0.915 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.263 0.737 28 H 0.208 0.792 29 H 0.196 0.804 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.858 14.007 -2.535 14.260 hybrid contribution 1.622 -0.756 0.940 2.021 sum 2.480 13.251 -1.595 13.575 Atomic orbital electron populations 1.20650 0.86364 1.04192 1.04360 1.21518 0.95139 0.86321 0.92907 1.19202 0.93636 0.90673 1.31762 1.17717 0.84716 0.84251 0.74303 1.90738 1.16070 1.82791 1.49208 1.42784 1.11982 1.00308 1.71223 1.24104 1.01328 0.90146 1.02596 1.23142 1.03596 0.84752 1.14306 1.70901 1.01535 1.25096 1.09502 1.82266 1.05730 1.10000 1.26278 1.85675 1.05198 1.01992 1.59733 1.23781 0.96043 0.92836 0.99925 1.77209 0.98616 1.12034 1.22756 1.49494 1.02422 1.08527 1.47949 1.19960 0.96612 0.70455 0.99746 1.21250 1.47775 0.98383 0.90781 0.91533 1.24927 0.94271 0.95938 0.98448 1.69915 1.44075 1.07253 1.31225 0.86252 0.78079 0.78896 0.83214 1.19506 1.20452 1.20482 0.89322 0.88684 0.90370 0.73735 0.79249 0.80367 0.92252 0.92296 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.56 36.01 0.34 -1.18 16 2 C 0.18 3.19 7.01 -81.59 -0.57 2.62 16 3 C -0.34 -5.15 6.13 -105.07 -0.64 -5.80 16 4 C 0.60 8.11 7.78 -12.53 -0.10 8.01 16 5 O -0.51 -7.90 12.65 5.26 0.07 -7.84 16 6 N -0.62 -6.23 5.41 -12.24 -0.07 -6.29 16 7 C 0.06 0.60 7.34 -14.92 -0.11 0.49 16 8 C -0.09 -0.90 11.38 -18.65 -0.21 -1.11 16 9 N -0.20 -2.59 11.65 29.67 0.35 -2.24 16 10 N -0.26 -3.52 13.33 60.35 0.80 -2.72 16 11 S 0.34 4.25 21.29 -107.50 -2.29 1.96 16 12 C 0.06 0.90 11.50 -16.98 -0.20 0.71 16 13 N -0.29 -5.48 12.50 30.86 0.39 -5.10 16 14 N -0.31 -6.26 3.56 -57.77 -0.21 -6.47 16 15 C 0.25 5.73 5.97 -5.20 -0.03 5.70 16 16 C -0.54 -13.79 9.39 -34.44 -0.32 -14.11 16 17 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -23.46 13.29 55.43 0.74 -22.72 16 20 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.09 1.37 6.52 -51.93 -0.34 1.03 16 26 H 0.08 1.20 7.05 -51.93 -0.37 0.83 16 27 H 0.42 2.80 7.78 -40.82 -0.32 2.48 16 28 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.18 1.63 7.50 -52.48 -0.39 1.24 16 30 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.06 1.34 7.01 -51.93 -0.36 0.98 16 32 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -29.56 302.35 -5.22 -34.78 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.59 Total: 0.22 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.94 Total: -3.01 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 2.00 Total: -45.55 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.07 Total: -7.84 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -2.29 Total: 1.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.56 -5.22 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890090582.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.945 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds