Wall clock time and date at job start Tue Mar 31 2020 07:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48501 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46786 * 299.99652 * 3 2 1 6 6 H 1.48504 * 109.47314 * 59.99772 * 3 2 1 7 7 C 1.37880 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47421 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47311 * 180.02562 * 11 10 9 13 13 C 1.34883 * 116.99819 * 179.97438 * 12 11 10 14 14 O 1.21613 * 120.00378 * 0.02562 * 13 12 11 15 15 C 1.46538 * 119.99817 * 179.97438 * 13 12 11 16 16 O 1.35373 * 126.65465 * 0.13950 * 15 13 12 17 17 C 1.33649 * 107.68443 * 180.24437 * 16 15 13 18 18 N 1.30643 * 109.16704 * 359.77251 * 17 16 15 19 19 C 1.33644 * 109.01179 * 359.97438 * 18 17 16 20 20 C 1.50706 * 126.28098 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.46715 * 5.02718 * 20 19 18 22 22 F 1.39897 * 109.47068 * 125.02629 * 20 19 18 23 23 F 1.39895 * 109.47042 * 245.02938 * 20 19 18 24 24 H 0.96997 * 119.99965 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46917 * 60.00332 * 9 7 2 26 26 H 1.08996 * 109.47275 * 300.00000 * 9 7 2 27 27 H 1.09005 * 109.46617 * 60.00082 * 10 9 7 28 28 H 1.08996 * 109.47348 * 300.00397 * 10 9 7 29 29 H 1.08999 * 109.47012 * 59.99681 * 11 10 9 30 30 H 1.09004 * 109.46881 * 300.00172 * 11 10 9 31 31 H 1.07990 * 125.41450 * 179.77316 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9872 -0.0001 12 8 2.4238 -6.0908 0.0005 13 6 1.9082 -7.3372 0.0006 14 8 0.7025 -7.4966 -0.0003 15 6 2.8008 -8.4993 0.0006 16 8 4.1544 -8.4787 0.0032 17 6 4.5797 -9.7456 -0.0032 18 7 3.5464 -10.5450 -0.0048 19 6 2.4289 -9.8120 0.0012 20 6 1.0169 -10.3387 0.0012 21 9 1.0395 -11.7334 0.1096 22 9 0.3175 -9.7980 1.0855 23 9 0.3831 -9.9739 -1.1913 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6044 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 0.8539 -5.0446 -0.8903 30 1 0.8532 -5.0451 0.8897 31 1 5.6132 -10.0588 -0.0066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892691295.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:06 Heat of formation + Delta-G solvation = -236.060297 kcal Electronic energy + Delta-G solvation = -22974.960900 eV Core-core repulsion = 18614.901094 eV Total energy + Delta-G solvation = -4360.059806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.37423 -48.88813 -48.86974 -45.04304 -41.63691 -38.21953 -36.68166 -35.96398 -33.76995 -32.76594 -29.36845 -28.20399 -25.96251 -24.88965 -23.71804 -22.56271 -22.19936 -20.23600 -19.81954 -19.52760 -19.34165 -18.67991 -18.50029 -17.97840 -17.53499 -16.98432 -16.49410 -15.89943 -15.77241 -15.66013 -15.40483 -15.24813 -15.05963 -15.00349 -14.96175 -14.20424 -13.97689 -13.83877 -13.75951 -13.16394 -12.87784 -12.66138 -12.53130 -12.42751 -12.20268 -12.18896 -11.54810 -11.49304 -11.24223 -10.86524 -10.57376 -8.21590 -6.32703 -1.06274 0.55698 0.85055 1.09663 1.14982 1.42287 1.42732 1.55115 1.57760 2.21952 2.41625 2.47281 3.04540 3.12869 3.16191 3.34131 3.53409 3.93052 3.95439 3.96719 4.36599 4.65578 4.71852 4.77890 5.00511 5.14398 5.48943 5.64039 5.80784 5.84863 6.13853 6.21991 6.83501 7.36964 8.90679 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.032929 B = 0.002942 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.098721 B = 9513.453780 C =10173.152573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.076 3.924 12 O -0.338 6.338 13 C 0.544 3.456 14 O -0.484 6.484 15 C -0.027 4.027 16 O -0.159 6.159 17 C 0.270 3.730 18 N -0.488 5.488 19 C -0.015 4.015 20 C 0.553 3.447 21 F -0.158 7.158 22 F -0.163 7.163 23 F -0.165 7.165 24 H 0.264 0.736 25 H -0.001 1.001 26 H 0.000 1.000 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.639 -22.989 0.009 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.132 4.132 11 C 0.003 3.997 12 O -0.253 6.253 13 C 0.386 3.614 14 O -0.373 6.373 15 C -0.085 4.085 16 O -0.044 6.044 17 C 0.046 3.954 18 N -0.214 5.214 19 C -0.140 4.140 20 C 0.497 3.503 21 F -0.139 7.139 22 F -0.144 7.144 23 F -0.146 7.146 24 H 0.073 0.927 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.350 0.650 Dipole moment (debyes) X Y Z Total from point charges 10.176 -23.513 0.007 25.621 hybrid contribution -0.475 1.545 0.002 1.616 sum 9.701 -21.969 0.009 24.015 Atomic orbital electron populations 1.70097 1.07836 1.27852 1.51517 1.25987 0.95769 1.03462 0.94665 0.85359 0.79167 0.78596 0.77684 1.18326 1.20500 1.20510 1.21653 0.93776 0.91850 1.50719 0.91638 1.18945 0.94264 0.92257 0.95749 1.21490 0.98858 0.90013 1.02866 1.23440 0.90707 0.82438 1.03086 1.86617 1.41842 1.14123 1.82734 1.19109 0.85450 0.82768 0.74056 1.91040 1.14362 1.86377 1.45543 1.21234 0.82229 0.92928 1.12089 1.84746 1.18007 1.34445 1.67162 1.30171 1.02412 0.73137 0.89670 1.70321 0.96478 1.34598 1.20053 1.21634 0.95414 0.89732 1.07219 1.16769 0.83234 0.75644 0.74635 1.93246 1.96670 1.28318 1.95712 1.93279 1.80333 1.85885 1.54932 1.93264 1.83371 1.91511 1.46500 0.92703 0.98215 0.98206 0.91242 0.91247 0.90657 0.90668 0.64984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.54 -29.89 9.11 25.60 0.23 -29.65 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.70 5.53 30.59 0.17 -3.53 16 11 C 0.08 2.61 5.48 71.98 0.39 3.00 16 12 O -0.34 -10.45 10.23 -57.02 -0.58 -11.03 16 13 C 0.54 15.98 7.93 69.99 0.55 16.53 16 14 O -0.48 -16.26 13.72 19.47 0.27 -15.99 16 15 C -0.03 -0.64 7.24 24.02 0.17 -0.47 16 16 O -0.16 -2.57 10.79 -7.25 -0.08 -2.65 16 17 C 0.27 2.22 13.21 130.42 1.72 3.94 16 18 N -0.49 -8.34 11.07 -303.08 -3.35 -11.70 16 19 C -0.02 -0.34 6.43 41.86 0.27 -0.08 16 20 C 0.55 13.89 2.82 71.24 0.20 14.09 16 21 F -0.16 -3.71 17.16 44.97 0.77 -2.94 16 22 F -0.16 -4.50 15.75 44.97 0.71 -3.79 16 23 F -0.17 -4.47 16.57 44.97 0.75 -3.72 16 24 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 26 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.07 2.57 8.14 -2.38 -0.02 2.56 16 31 H 0.34 -2.30 8.06 -2.92 -0.02 -2.32 16 Total: -1.00 -70.68 300.59 6.30 -64.37 By element: Atomic # 1 Polarization: -9.11 SS G_CDS: 1.19 Total: -7.93 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.33 Total: 5.67 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: -3.07 Total: -67.26 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.39 Total: -29.67 kcal Atomic # 9 Polarization: -12.68 SS G_CDS: 2.23 Total: -10.45 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.68 6.30 -64.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691295.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.686 kcal (2) G-P(sol) polarization free energy of solvation -70.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds