Wall clock time and date at job start Tue Mar 31 2020 06:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34801 * 116.99461 * 90.00255 * 12 2 1 14 14 O 1.21551 * 119.99879 * 0.02562 * 13 12 2 15 15 C 1.47189 * 120.00009 * 180.02562 * 13 12 2 16 16 C 1.36388 * 122.56124 * 179.97438 * 15 13 12 17 17 S 1.71005 * 109.01490 * 179.97438 * 16 15 13 18 18 C 1.75968 * 90.64415 * 0.02562 * 17 16 15 19 19 C 1.47378 * 125.22593 * 179.97438 * 18 17 16 20 20 N 1.31602 * 125.85873 * 179.66443 * 19 18 17 21 21 C 1.33634 * 109.24731 * 179.87227 * 20 19 18 22 22 C 1.35004 * 108.41822 * 0.39711 * 21 20 19 23 23 N 1.36586 * 125.85877 * 359.97438 * 19 18 17 24 24 H 0.97002 * 126.50502 * 359.95235 * 23 19 18 25 25 N 1.29934 * 109.55171 * 359.75353 * 18 17 16 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 30 30 H 1.08001 * 125.49137 * 359.97438 * 16 15 13 31 31 H 1.07996 * 125.79503 * 180.16481 * 21 20 19 32 32 H 1.08004 * 126.47197 * 179.78837 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6846 -1.1855 13 6 2.2180 0.0671 -2.2857 14 8 1.9978 1.2621 -2.2547 15 6 2.7075 -0.5592 -3.5246 16 6 2.9313 0.1509 -4.6673 17 16 3.4919 -0.9126 -5.8834 18 6 3.3910 -2.2712 -4.7696 19 6 3.7372 -3.6659 -5.0965 20 7 3.6724 -4.6898 -4.2722 21 6 4.0587 -5.7967 -4.9135 22 6 4.3864 -5.4635 -6.1801 23 7 4.1860 -4.1167 -6.3052 24 1 4.3342 -3.5827 -7.1014 25 7 2.9688 -1.8551 -3.6133 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7082 1.1609 3.4844 30 1 2.7790 1.2136 -4.7851 31 1 4.1048 -6.7889 -4.4895 32 1 4.7396 -6.1342 -6.9495 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892691854.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:22 Heat of formation + Delta-G solvation = -2.125985 kcal Electronic energy + Delta-G solvation = -19957.799246 eV Core-core repulsion = 16624.785956 eV Total energy + Delta-G solvation = -3333.013290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.97636 -41.71406 -40.20398 -37.65707 -35.36089 -33.68011 -32.86769 -31.70753 -30.02462 -27.60713 -27.36853 -25.26160 -23.09638 -22.75111 -21.74416 -20.61177 -20.16094 -19.05282 -18.79414 -17.74321 -17.46291 -17.13448 -16.60704 -16.34230 -15.96907 -15.18399 -15.15521 -14.98753 -14.61409 -14.26960 -14.22767 -13.92947 -13.38712 -13.23480 -12.99548 -12.84014 -12.42775 -12.18330 -11.79624 -11.64377 -11.34986 -11.10221 -11.09568 -11.04929 -11.00880 -10.63367 -10.45527 -9.14233 -8.31655 -6.48105 -1.01068 -0.17669 0.12411 0.27388 1.22160 1.39354 1.40906 1.55099 1.65386 1.92583 1.98379 2.28994 2.39621 2.98259 3.01719 3.40532 3.89180 3.94488 4.09234 4.36577 4.41881 4.51447 4.60739 4.73924 4.77484 4.96992 5.07352 5.43410 5.56103 5.66663 5.79184 5.98684 6.16827 6.37090 6.56014 6.85213 7.02113 7.22712 8.76783 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018542 B = 0.003988 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.748786 B = 7020.088478 C = 8251.609978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.214 3.786 3 H 0.015 0.985 4 C -0.551 4.551 5 H 0.059 0.941 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.984 3.016 9 H -0.270 1.270 10 H -0.270 1.270 11 H -0.267 1.267 12 O -0.347 6.347 13 C 0.524 3.476 14 O -0.534 6.534 15 C 0.005 3.995 16 C -0.201 4.201 17 S 0.335 5.665 18 C 0.090 3.910 19 C 0.225 3.775 20 N -0.487 5.487 21 C -0.061 4.061 22 C 0.018 3.982 23 N -0.538 5.538 24 H 0.440 0.560 25 N -0.431 5.431 26 H 0.026 0.974 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.273 0.727 30 H 0.219 0.781 31 H 0.193 0.807 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.364 -9.261 -26.036 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.161 3.839 3 H 0.033 0.967 4 C -0.588 4.588 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.807 3.193 9 H -0.194 1.194 10 H -0.195 1.195 11 H -0.192 1.192 12 O -0.263 6.263 13 C 0.368 3.632 14 O -0.426 6.426 15 C -0.130 4.130 16 C -0.344 4.344 17 S 0.592 5.408 18 C -0.188 4.188 19 C -0.036 4.036 20 N -0.209 5.209 21 C -0.211 4.211 22 C -0.120 4.120 23 N -0.146 5.146 24 H 0.283 0.717 25 N -0.146 5.146 26 H 0.045 0.955 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.235 0.765 31 H 0.210 0.790 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 8.168 -8.981 -25.604 28.336 hybrid contribution -0.136 0.670 1.068 1.268 sum 8.032 -8.311 -24.536 27.122 Atomic orbital electron populations 1.21986 0.96427 1.00302 1.01141 1.20505 0.92314 0.92263 0.78779 0.96702 1.21282 1.33578 1.13837 0.90129 0.92269 1.25806 0.94603 0.95669 1.01920 1.70002 1.36399 1.23507 1.25318 0.85125 0.78502 0.78351 0.77353 1.19391 1.19484 1.19180 1.86700 1.75482 1.42989 1.21094 1.20528 0.74057 0.84518 0.84131 1.90768 1.50630 1.16226 1.84995 1.19270 1.10845 0.88850 0.94054 1.27368 1.02653 1.08614 0.95807 1.82751 1.55092 0.93348 1.09586 1.24335 1.05703 0.96089 0.92637 1.19283 1.09191 0.90594 0.84538 1.70471 1.18033 0.99488 1.32908 1.23078 1.06670 0.98217 0.93148 1.23783 1.04199 0.83293 1.00722 1.43288 1.49771 1.09784 1.11713 0.71735 1.66755 1.11694 1.12995 1.23203 0.95492 0.89438 0.94006 0.91763 0.76463 0.78973 0.74063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.87 9.33 71.98 0.67 -7.20 16 2 C 0.21 12.94 2.56 29.85 0.08 13.01 16 3 H 0.02 0.99 7.16 -2.39 -0.02 0.97 16 4 C -0.55 -34.20 8.90 25.60 0.23 -33.97 16 5 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 6 C 0.02 1.16 5.30 84.66 0.45 1.61 16 7 N -0.91 -54.56 11.32 21.45 0.24 -54.32 16 8 Si 0.98 45.66 29.54 68.60 2.03 47.69 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 O -0.35 -19.74 9.78 -57.13 -0.56 -20.30 16 13 C 0.52 25.80 7.91 70.17 0.56 26.36 16 14 O -0.53 -27.33 15.94 19.67 0.31 -27.01 16 15 C 0.01 0.20 6.68 40.96 0.27 0.48 16 16 C -0.20 -5.16 10.63 67.39 0.72 -4.45 16 17 S 0.33 5.23 23.17 -56.49 -1.31 3.92 16 18 C 0.09 2.50 7.47 87.38 0.65 3.15 16 19 C 0.23 5.68 8.05 136.30 1.10 6.77 16 20 N -0.49 -15.15 11.28 -189.67 -2.14 -17.29 16 21 C -0.06 -1.18 11.84 83.67 0.99 -0.19 16 22 C 0.02 0.18 12.03 83.18 1.00 1.18 16 23 N -0.54 -6.60 6.22 -187.53 -1.17 -7.77 16 24 H 0.44 1.54 8.96 -92.71 -0.83 0.71 16 25 N -0.43 -16.86 10.56 -179.33 -1.89 -18.75 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 5.09 6.07 -2.39 -0.01 5.08 16 28 H 0.04 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.22 4.56 8.01 -2.91 -0.02 4.54 16 31 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.24 -0.43 8.06 -2.91 -0.02 -0.45 16 Total: -1.00 -88.47 308.55 2.58 -85.89 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 0.36 Total: 1.19 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.71 Total: 6.75 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.96 Total: -98.12 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.25 Total: -47.31 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.31 Total: 3.92 kcal Total: -88.47 2.58 -85.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691854.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.764 kcal (2) G-P(sol) polarization free energy of solvation -88.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds