Wall clock time and date at job start Tue Mar 31 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99564 * 2 1 4 4 N 1.46908 * 109.46976 * 125.00350 * 3 2 1 5 5 C 1.46898 * 110.99865 * 193.95233 * 4 3 2 6 6 C 1.50696 * 109.47258 * 66.04909 * 5 4 3 7 7 H 1.08003 * 120.00179 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00213 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00416 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99679 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47061 * 90.00591 * 10 8 6 12 12 H 1.48501 * 109.47001 * 210.00199 * 10 8 6 13 13 H 1.48504 * 109.47153 * 330.00184 * 10 8 6 14 14 C 1.40722 * 110.99843 * 69.99776 * 4 3 2 15 15 C 1.37802 * 122.46436 * 64.18014 * 14 4 3 16 16 C 1.36536 * 114.39796 * 180.28809 * 15 14 4 17 17 C 1.43204 * 125.29347 * 179.71253 * 16 15 14 18 18 N 6.78648 * 163.39522 * 253.06393 * 2 1 3 19 19 S 1.75869 * 109.41269 * 359.73149 * 16 15 14 20 20 C 1.34321 * 122.46526 * 243.95617 * 14 4 3 21 21 N 1.48065 * 125.00828 * 359.97438 * 20 14 4 22 22 O 1.21803 * 119.99814 * 179.72459 * 21 20 14 23 23 O 1.21799 * 119.99983 * 359.45344 * 21 20 14 24 24 H 1.08004 * 119.99616 * 180.02562 * 1 2 3 25 25 H 1.07992 * 120.00418 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99889 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47643 * 5.00531 * 3 2 1 28 28 H 1.09000 * 109.47146 * 244.99930 * 3 2 1 29 29 H 1.09000 * 109.46776 * 186.04970 * 5 4 3 30 30 H 1.08998 * 109.46938 * 306.04524 * 5 4 3 31 31 H 0.96996 * 120.00243 * 179.97438 * 9 8 6 32 32 H 1.07991 * 122.79567 * 0.02562 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.5030 2.6910 1.3674 6 6 2.3706 3.5798 1.8133 7 1 1.3741 3.1756 1.9133 8 6 2.6065 4.9092 2.0926 9 7 1.6182 5.6850 2.4813 10 14 4.3300 5.6085 1.9189 11 1 4.5191 6.1218 0.5384 12 1 4.5142 6.7177 2.8889 13 1 5.3267 4.5419 2.1915 14 6 4.0549 0.4258 0.9385 15 6 4.9678 0.5648 -0.0844 16 6 5.9223 -0.4106 -0.1248 17 6 6.9769 -0.4967 -1.0898 18 7 7.8135 -0.5649 -1.8553 19 16 5.6550 -1.5451 1.1921 20 6 4.2525 -0.6359 1.7373 21 7 3.4099 -0.9912 2.9018 22 8 3.6702 -1.9808 3.5626 23 8 2.4594 -0.2912 3.2020 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 4.2707 2.6650 2.1407 30 1 3.9303 3.0825 0.4443 31 1 1.7843 6.6201 2.6781 32 1 4.9287 1.3752 -0.7971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893949129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:41 Heat of formation + Delta-G solvation = 110.200349 kcal Electronic energy + Delta-G solvation = -20855.315179 eV Core-core repulsion = 17527.172724 eV Total energy + Delta-G solvation = -3328.142455 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72755 -39.79728 -37.27638 -36.10894 -35.63657 -33.34160 -32.32113 -31.01432 -28.09243 -26.81709 -24.95130 -24.04165 -22.01045 -20.29634 -20.19555 -19.15583 -18.45883 -17.42202 -17.25751 -16.84448 -16.54656 -15.50265 -15.21577 -14.68150 -14.52438 -14.08038 -13.84172 -13.54220 -13.21222 -12.90914 -12.77030 -12.49427 -12.24820 -11.78662 -11.42102 -11.24885 -10.97524 -10.95970 -10.86257 -10.74681 -10.55207 -10.09819 -9.60475 -9.55209 -9.16966 -8.95582 -8.73737 -8.06156 -6.19195 -4.19090 -0.68645 0.16285 0.90334 1.00206 1.72811 1.93667 2.32186 2.55463 2.74774 3.15323 3.23237 3.24023 3.26013 4.17079 4.27152 4.51991 4.79003 5.10412 5.11365 5.18916 5.42351 5.52343 5.70586 6.09965 6.17289 6.45318 6.48607 6.54581 6.85285 6.86905 7.06131 7.24841 7.35653 7.61766 7.94432 8.41723 8.90779 9.39069 10.93069 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.006611 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.687193 B = 4234.171668 C = 5103.387476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.149 4.149 3 C 0.090 3.910 4 N -0.469 5.469 5 C 0.168 3.832 6 C -0.513 4.513 7 H 0.090 0.910 8 C 0.076 3.924 9 N -0.889 5.889 10 Si 0.867 3.133 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.184 3.816 15 C -0.103 4.103 16 C -0.106 4.106 17 C 0.278 3.722 18 N -0.378 5.378 19 S 0.308 5.692 20 C -0.157 4.157 21 N 0.057 4.943 22 O -0.204 6.204 23 O -0.057 6.057 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.040 0.960 29 H 0.033 0.967 30 H -0.005 1.005 31 H 0.266 0.734 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 -12.849 -5.834 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.168 4.168 3 C -0.036 4.036 4 N -0.191 5.191 5 C 0.044 3.956 6 C -0.551 4.551 7 H 0.108 0.892 8 C -0.127 4.127 9 N -0.527 5.527 10 Si 0.694 3.306 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.193 1.193 14 C 0.073 3.927 15 C -0.142 4.142 16 C -0.229 4.229 17 C -0.039 4.039 18 N -0.056 5.056 19 S 0.575 5.425 20 C -0.360 4.360 21 N 0.582 4.418 22 O -0.403 6.403 23 O -0.295 6.295 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.930 -14.227 -6.507 17.539 hybrid contribution 0.189 1.999 -0.556 2.084 sum 8.119 -12.227 -7.062 16.288 Atomic orbital electron populations 1.23777 0.95712 1.01811 0.99887 1.22732 0.96193 0.97407 1.00444 1.21387 0.95332 0.97304 0.89542 1.60348 1.10291 1.08548 1.39936 1.20376 0.97587 0.82058 0.95536 1.20853 0.95729 0.92636 1.45887 0.89180 1.24817 0.96449 0.96794 0.94636 1.69856 1.31206 1.06410 1.45253 0.86995 0.85663 0.79481 0.78414 1.20140 1.20802 1.19299 1.18077 0.92777 0.92111 0.89731 1.21309 0.93132 0.99548 1.00239 1.20367 0.98415 1.03489 1.00640 1.24005 0.92313 0.94754 0.92801 1.81334 1.09065 1.06461 1.08699 1.84510 1.18541 1.21280 1.18211 1.26334 1.03925 1.06168 0.99586 1.42277 1.00209 0.99878 0.99449 1.94535 1.77069 1.17988 1.50698 1.94749 1.16076 1.48072 1.70566 0.88943 0.87864 0.89231 0.86668 0.94202 0.94859 0.98701 0.92353 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 14.32 29.01 0.42 -1.96 16 2 C -0.15 -2.18 9.32 -36.03 -0.34 -2.51 16 3 C 0.09 1.45 5.20 -4.97 -0.03 1.43 16 4 N -0.47 -8.53 3.12 -175.23 -0.55 -9.08 16 5 C 0.17 3.57 3.43 -4.98 -0.02 3.55 16 6 C -0.51 -13.15 8.87 -34.44 -0.31 -13.45 16 7 H 0.09 2.53 7.47 -52.48 -0.39 2.14 16 8 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 10 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 14 C 0.18 2.77 3.88 -85.31 -0.33 2.44 16 15 C -0.10 -1.25 8.79 -40.36 -0.35 -1.60 16 16 C -0.11 -1.12 6.31 -38.27 -0.24 -1.36 16 17 C 0.28 3.05 15.82 -22.47 -0.36 2.70 16 18 N -0.38 -4.76 18.54 41.84 0.78 -3.99 16 19 S 0.31 3.21 23.07 -107.50 -2.48 0.73 16 20 C -0.16 -2.30 7.52 -10.99 -0.08 -2.39 16 21 N 0.06 0.99 4.46 33.59 0.15 1.14 16 22 O -0.20 -3.44 19.07 -29.46 -0.56 -4.01 16 23 O -0.06 -1.12 17.84 -29.46 -0.53 -1.65 16 24 H 0.09 1.09 8.06 -52.48 -0.42 0.67 16 25 H 0.10 1.42 7.84 -52.49 -0.41 1.01 16 26 H 0.09 1.25 7.88 -52.49 -0.41 0.84 16 27 H 0.12 2.11 6.25 -51.93 -0.32 1.78 16 28 H 0.04 0.56 7.36 -51.93 -0.38 0.18 16 29 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 30 H 0.00 -0.09 7.22 -51.93 -0.38 -0.47 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 32 H 0.17 1.86 7.72 -52.49 -0.41 1.45 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -28.75 312.44 -6.77 -35.52 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -2.66 Total: -2.57 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.73 Total: -11.22 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 1.15 Total: -36.69 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -1.09 Total: -5.65 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.48 Total: 0.73 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.75 -6.77 -35.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893949129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.724 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds