Wall clock time and date at job start Tue Mar 31 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99564 * 2 1 4 4 N 1.46908 * 109.46976 * 125.00350 * 3 2 1 5 5 C 1.46898 * 110.99865 * 193.95233 * 4 3 2 6 6 C 1.50696 * 109.47258 * 66.04909 * 5 4 3 7 7 H 1.08003 * 120.00179 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00213 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00416 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99679 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47061 * 90.00591 * 10 8 6 12 12 H 1.48501 * 109.47001 * 210.00199 * 10 8 6 13 13 H 1.48504 * 109.47153 * 330.00184 * 10 8 6 14 14 C 1.40722 * 110.99843 * 69.99776 * 4 3 2 15 15 C 1.37802 * 122.46436 * 64.18014 * 14 4 3 16 16 C 1.36536 * 114.39796 * 180.28809 * 15 14 4 17 17 C 1.43204 * 125.29347 * 179.71253 * 16 15 14 18 18 N 6.78648 * 163.39522 * 253.06393 * 2 1 3 19 19 S 1.75869 * 109.41269 * 359.73149 * 16 15 14 20 20 C 1.34321 * 122.46526 * 243.95617 * 14 4 3 21 21 N 1.48065 * 125.00828 * 359.97438 * 20 14 4 22 22 O 1.21803 * 119.99814 * 179.72459 * 21 20 14 23 23 O 1.21799 * 119.99983 * 359.45344 * 21 20 14 24 24 H 1.08004 * 119.99616 * 180.02562 * 1 2 3 25 25 H 1.07992 * 120.00418 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99889 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47643 * 5.00531 * 3 2 1 28 28 H 1.09000 * 109.47146 * 244.99930 * 3 2 1 29 29 H 1.09000 * 109.46776 * 186.04970 * 5 4 3 30 30 H 1.08998 * 109.46938 * 306.04524 * 5 4 3 31 31 H 0.96996 * 120.00243 * 179.97438 * 9 8 6 32 32 H 1.07991 * 122.79567 * 0.02562 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.5030 2.6910 1.3674 6 6 2.3706 3.5798 1.8133 7 1 1.3741 3.1756 1.9133 8 6 2.6065 4.9092 2.0926 9 7 1.6182 5.6850 2.4813 10 14 4.3300 5.6085 1.9189 11 1 4.5191 6.1218 0.5384 12 1 4.5142 6.7177 2.8889 13 1 5.3267 4.5419 2.1915 14 6 4.0549 0.4258 0.9385 15 6 4.9678 0.5648 -0.0844 16 6 5.9223 -0.4106 -0.1248 17 6 6.9769 -0.4967 -1.0898 18 7 7.8135 -0.5649 -1.8553 19 16 5.6550 -1.5451 1.1921 20 6 4.2525 -0.6359 1.7373 21 7 3.4099 -0.9912 2.9018 22 8 3.6702 -1.9808 3.5626 23 8 2.4594 -0.2912 3.2020 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 4.2707 2.6650 2.1407 30 1 3.9303 3.0825 0.4443 31 1 1.7843 6.6201 2.6781 32 1 4.9287 1.3752 -0.7971 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893949129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:41 Heat of formation + Delta-G solvation = 94.147426 kcal Electronic energy + Delta-G solvation = -20856.011286 eV Core-core repulsion = 17527.172724 eV Total energy + Delta-G solvation = -3328.838562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.00216 -40.98213 -38.27979 -37.42329 -36.82513 -34.94754 -33.89267 -32.19139 -29.79064 -28.01579 -26.34541 -25.14212 -23.64029 -21.46589 -21.43017 -20.32759 -19.68542 -19.01732 -18.52355 -18.13989 -17.72813 -16.88275 -16.51784 -16.13642 -15.59697 -15.32556 -15.03435 -14.60001 -14.47182 -14.30557 -14.10735 -13.79830 -13.64727 -13.00160 -12.76720 -12.64565 -12.52647 -12.48515 -12.20911 -12.11667 -11.93352 -11.79136 -11.50570 -10.76998 -10.63137 -10.35028 -9.91025 -9.40708 -8.24390 -6.28383 -1.78515 -0.82757 -0.20665 -0.08458 0.56871 0.79630 1.35201 1.37870 1.39858 1.43229 1.47023 1.85573 2.29667 2.35298 2.93087 3.09236 3.44717 3.73248 4.02679 4.14559 4.26148 4.42198 4.53854 4.64233 4.88993 4.98059 5.02664 5.19329 5.48251 5.68441 5.81811 5.94954 5.97242 6.09029 6.50937 6.56722 6.80046 7.33359 8.91739 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.012312 B = 0.006611 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.687193 B = 4234.171668 C = 5103.387476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C 0.092 3.908 4 N -0.489 5.489 5 C 0.179 3.821 6 C -0.510 4.510 7 H 0.046 0.954 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.935 3.065 11 H -0.261 1.261 12 H -0.288 1.288 13 H -0.248 1.248 14 C 0.174 3.826 15 C -0.109 4.109 16 C -0.083 4.083 17 C 0.298 3.702 18 N -0.397 5.397 19 S 0.402 5.598 20 C -0.183 4.183 21 N 0.062 4.938 22 O -0.176 6.176 23 O -0.138 6.138 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.016 0.984 31 H 0.266 0.734 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -14.806 -7.289 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C -0.033 4.033 4 N -0.211 5.211 5 C 0.054 3.946 6 C -0.549 4.549 7 H 0.064 0.936 8 C -0.183 4.183 9 N -0.584 5.584 10 Si 0.759 3.241 11 H -0.185 1.185 12 H -0.214 1.214 13 H -0.172 1.172 14 C 0.062 3.938 15 C -0.148 4.148 16 C -0.207 4.207 17 C -0.019 4.019 18 N -0.075 5.075 19 S 0.670 5.330 20 C -0.387 4.387 21 N 0.581 4.419 22 O -0.387 6.387 23 O -0.357 6.357 24 H 0.133 0.867 25 H 0.111 0.889 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 11.070 -16.115 -7.974 21.115 hybrid contribution -0.739 2.347 -0.118 2.464 sum 10.331 -13.768 -8.091 19.020 Atomic orbital electron populations 1.23938 0.95704 1.02443 0.98930 1.22702 0.96381 0.97018 1.01288 1.21313 0.94918 0.97054 0.90046 1.60011 1.11994 1.07525 1.41594 1.20057 0.95351 0.83328 0.95829 1.21073 0.95549 0.93446 1.44795 0.93616 1.25716 1.00833 0.97283 0.94506 1.70030 1.33913 1.06807 1.47613 0.85900 0.80567 0.78798 0.78835 1.18548 1.21413 1.17152 1.18052 0.92773 0.91875 0.91103 1.21190 0.92912 1.00726 0.99933 1.20323 0.97288 1.02901 1.00183 1.23761 0.91776 0.94064 0.92264 1.81387 1.09741 1.07117 1.09229 1.84354 1.14316 1.18410 1.15892 1.26589 1.05528 1.07817 0.98721 1.42558 1.00095 0.99348 0.99923 1.94479 1.76143 1.17343 1.50693 1.94784 1.18582 1.49460 1.72844 0.86700 0.88883 0.88016 0.90064 0.91771 0.95511 0.96655 0.92468 0.79644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 14.32 67.78 0.97 -3.78 16 2 C -0.16 -4.52 9.32 25.64 0.24 -4.28 16 3 C 0.09 3.01 5.20 85.55 0.44 3.46 16 4 N -0.49 -17.84 3.12 -708.31 -2.21 -20.06 16 5 C 0.18 7.57 3.43 85.56 0.29 7.86 16 6 C -0.51 -27.27 8.87 25.60 0.23 -27.05 16 7 H 0.05 2.78 7.47 -2.91 -0.02 2.76 16 8 C 0.01 0.80 5.47 84.66 0.46 1.27 16 9 N -0.94 -56.65 13.96 21.45 0.30 -56.35 16 10 Si 0.94 40.83 27.47 68.60 1.88 42.71 16 11 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.25 -9.92 6.54 99.48 0.65 -9.27 16 14 C 0.17 4.92 3.88 36.71 0.14 5.06 16 15 C -0.11 -2.27 8.79 21.77 0.19 -2.08 16 16 C -0.08 -1.39 6.31 23.12 0.15 -1.25 16 17 C 0.30 5.27 15.82 88.33 1.40 6.66 16 18 N -0.40 -8.54 18.54 19.00 0.35 -8.19 16 19 S 0.40 6.64 23.07 -56.49 -1.30 5.33 16 20 C -0.18 -4.96 7.52 81.02 0.61 -4.35 16 21 N 0.06 2.11 4.46 -47.66 -0.21 1.90 16 22 O -0.18 -5.65 19.07 18.88 0.36 -5.29 16 23 O -0.14 -5.64 17.84 18.89 0.34 -5.31 16 24 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 25 H 0.09 2.72 7.84 -2.91 -0.02 2.70 16 26 H 0.10 2.71 7.88 -2.91 -0.02 2.68 16 27 H 0.08 3.18 6.25 -2.39 -0.01 3.16 16 28 H 0.06 1.73 7.36 -2.39 -0.02 1.72 16 29 H 0.03 1.17 7.12 -2.39 -0.02 1.15 16 30 H 0.02 0.60 7.22 -2.39 -0.02 0.58 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.19 3.31 7.72 -2.92 -0.02 3.29 16 Total: -1.00 -65.92 312.44 5.74 -60.18 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 1.11 Total: 3.54 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.12 Total: -18.48 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.77 Total: -82.69 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.70 Total: -10.59 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.88 Total: 42.71 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.30 Total: 5.33 kcal Total: -65.92 5.74 -60.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893949129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.326 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds