Wall clock time and date at job start Tue Mar 31 2020 06:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35547 * 116.99776 * 2 1 4 4 N 1.32160 * 119.72536 * 0.02721 * 3 2 1 5 5 C 1.31889 * 121.88070 * 179.97438 * 4 3 2 6 6 C 1.38913 * 121.09719 * 0.02562 * 5 4 3 7 7 N 1.40164 * 120.34067 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99666 * 212.63544 * 7 6 5 9 9 O 1.21287 * 120.00441 * 5.26634 * 8 7 6 10 10 C 1.50703 * 119.99719 * 185.26327 * 8 7 6 11 11 S 1.80999 * 109.47274 * 180.02562 * 10 8 7 12 12 C 1.76192 * 100.00323 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00240 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00038 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47134 * 90.00475 * 16 14 12 18 18 H 1.48501 * 109.47424 * 210.00445 * 16 14 12 19 19 H 1.48501 * 109.47386 * 330.00282 * 16 14 12 20 20 C 1.38938 * 119.31647 * 359.69927 * 6 5 4 21 21 C 1.39952 * 118.28100 * 0.55992 * 20 6 5 22 22 C 1.43198 * 120.56221 * 179.73382 * 21 20 6 23 23 N 3.53549 * 165.72006 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47094 * 299.99255 * 1 2 3 26 26 H 1.08998 * 109.47777 * 59.99759 * 1 2 3 27 27 H 1.08000 * 119.45066 * 179.97438 * 5 4 3 28 28 H 0.96997 * 119.99620 * 32.64177 * 7 6 5 29 29 H 1.08998 * 109.47470 * 300.00078 * 10 8 7 30 30 H 1.09000 * 109.46921 * 60.00542 * 10 8 7 31 31 H 0.96998 * 120.00031 * 179.97438 * 15 14 12 32 32 H 1.07992 * 120.85723 * 180.32539 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 7 1.3192 2.3126 0.0005 5 6 1.8733 3.5095 0.0011 6 6 3.2541 3.6608 0.0005 7 7 3.8261 4.9405 0.0006 8 6 4.9982 5.1546 -0.6293 9 8 5.5104 4.2656 -1.2762 10 6 5.6724 6.4987 -0.5300 11 16 7.2148 6.4715 -1.4767 12 6 7.7765 8.1174 -1.1939 13 1 7.1921 8.7901 -0.5837 14 6 8.9706 8.5492 -1.7545 15 7 9.6831 7.7292 -2.4979 16 14 9.5664 10.2939 -1.4541 17 1 10.4152 10.3243 -0.2360 18 1 10.3600 10.7540 -2.6220 19 1 8.3978 11.1906 -1.2657 20 6 4.0624 2.5307 0.0058 21 6 3.4457 1.2744 -0.0006 22 6 4.2317 0.0775 -0.0013 23 7 4.8552 -0.8721 -0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.2429 4.3865 0.0011 28 1 3.3784 5.6717 0.4540 29 1 5.0126 7.2669 -0.9332 30 1 5.8909 6.7192 0.5149 31 1 10.5174 8.0310 -2.8900 32 1 5.1386 2.6195 0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906146221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:12 Heat of formation + Delta-G solvation = 0.643285 kcal Electronic energy + Delta-G solvation = -19407.529561 eV Core-core repulsion = 16074.636355 eV Total energy + Delta-G solvation = -3332.893206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33440 -39.76361 -38.06386 -36.68301 -34.89032 -32.85322 -32.51292 -30.83625 -28.77981 -27.43025 -25.58109 -25.03085 -23.52553 -20.85894 -19.59516 -18.70678 -18.26458 -17.48768 -16.58892 -16.51183 -16.28397 -15.39182 -14.87766 -14.68406 -14.49292 -14.22305 -14.17708 -13.59969 -13.42490 -13.25724 -13.14366 -12.73872 -12.66749 -12.36311 -12.15874 -11.68423 -11.13814 -11.10664 -10.85597 -10.81078 -10.36516 -9.96245 -9.90324 -9.54563 -9.14600 -8.37570 -8.25464 -6.61967 -6.30079 -4.02468 0.27239 0.85021 2.48301 2.53405 2.58859 2.81345 2.91175 3.17417 3.20113 3.25302 3.43372 3.58332 3.61013 3.97117 4.11358 4.41137 4.65730 4.76232 4.94651 4.99680 5.01905 5.05690 5.18686 5.33178 5.46060 5.61109 5.68801 5.77133 5.95993 6.34386 6.76858 7.18687 7.28675 7.43254 7.51551 8.16572 8.26591 9.15503 10.77275 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035883 B = 0.002922 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.119568 B = 9579.039089 C =10212.115032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.302 6.302 3 C 0.344 3.656 4 N -0.517 5.517 5 C 0.144 3.856 6 C 0.076 3.924 7 N -0.673 5.673 8 C 0.532 3.468 9 O -0.495 6.495 10 C -0.154 4.154 11 S -0.056 6.056 12 C -0.538 4.538 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.001 3.999 21 C -0.075 4.075 22 C 0.268 3.732 23 N -0.407 5.407 24 H 0.098 0.902 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.172 0.828 28 H 0.415 0.585 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.270 0.730 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.865 -6.991 7.651 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.207 6.207 3 C 0.162 3.838 4 N -0.239 5.239 5 C -0.016 4.016 6 C -0.022 4.022 7 N -0.321 5.321 8 C 0.320 3.680 9 O -0.367 6.367 10 C -0.305 4.305 11 S 0.170 5.830 12 C -0.686 4.686 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.501 5.501 16 Si 0.746 3.254 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.029 4.029 21 C -0.082 4.082 22 C -0.048 4.048 23 N -0.082 5.082 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.189 0.811 28 H 0.252 0.748 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.640 -10.283 6.453 22.245 hybrid contribution -0.036 3.145 1.080 3.325 sum -18.676 -7.138 7.533 21.366 Atomic orbital electron populations 1.22956 0.76486 1.03353 1.02834 1.86264 1.23482 1.23858 1.87119 1.19604 0.87416 0.85238 0.91576 1.67397 1.38991 0.97926 1.19596 1.22471 0.90855 0.94392 0.93849 1.18418 0.92641 0.86294 1.04842 1.43592 1.24024 1.08694 1.55806 1.20657 0.79430 0.90619 0.77279 1.90740 1.62774 1.45189 1.38011 1.23545 1.05057 0.95086 1.06767 1.85472 1.15301 1.18585 1.63638 1.22837 1.10235 0.97756 1.37753 0.90755 1.25003 0.95509 0.98637 0.94404 1.70006 1.14047 1.35434 1.30660 0.86148 0.78798 0.82389 0.78056 1.20222 1.20722 1.19644 1.21648 1.02347 0.88174 0.90707 1.15710 0.88632 0.89022 1.14880 1.24939 0.93371 0.92561 0.93961 1.81217 1.08242 1.10162 1.08604 0.88408 0.91858 0.91826 0.81091 0.74792 0.88572 0.88479 0.92056 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.38 101.05 1.05 1.31 16 2 O -0.30 -3.19 9.91 -18.34 -0.18 -3.38 16 3 C 0.34 3.80 7.50 -16.64 -0.12 3.68 16 4 N -0.52 -5.00 9.19 -12.83 -0.12 -5.12 16 5 C 0.14 1.18 11.10 -17.28 -0.19 0.99 16 6 C 0.08 0.78 6.30 -83.54 -0.53 0.26 16 7 N -0.67 -6.87 5.36 -9.78 -0.05 -6.93 16 8 C 0.53 8.24 7.61 -10.99 -0.08 8.16 16 9 O -0.50 -9.63 13.56 5.55 0.08 -9.55 16 10 C -0.15 -2.66 6.16 36.01 0.22 -2.44 16 11 S -0.06 -1.42 20.57 -107.50 -2.21 -3.63 16 12 C -0.54 -14.47 9.50 30.94 0.29 -14.18 16 13 H 0.07 1.88 7.80 -52.48 -0.41 1.47 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 15 N -0.87 -25.30 13.22 55.49 0.73 -24.57 16 16 Si 0.92 20.60 29.55 -169.99 -5.02 15.58 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.00 0.01 8.49 -38.68 -0.33 -0.32 16 21 C -0.08 -0.91 5.76 -106.56 -0.61 -1.53 16 22 C 0.27 3.75 14.90 -22.47 -0.33 3.42 16 23 N -0.41 -6.44 18.54 41.84 0.78 -5.67 16 24 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 26 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 27 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.42 2.61 8.82 -40.82 -0.36 2.25 16 29 H 0.10 1.49 8.14 -51.92 -0.42 1.07 16 30 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.17 2.31 6.48 -52.49 -0.34 1.97 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -34.27 314.54 -4.77 -39.04 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -2.78 Total: -1.82 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.74 Total: 1.29 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 1.34 Total: -42.28 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.11 Total: -12.93 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.27 -4.77 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906146221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.686 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds