Wall clock time and date at job start Tue Mar 31 2020 06:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35547 * 116.99776 * 2 1 4 4 N 1.32160 * 119.72536 * 0.02721 * 3 2 1 5 5 C 1.31889 * 121.88070 * 179.97438 * 4 3 2 6 6 C 1.38913 * 121.09719 * 0.02562 * 5 4 3 7 7 N 1.40164 * 120.34067 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99666 * 212.63544 * 7 6 5 9 9 O 1.21287 * 120.00441 * 5.26634 * 8 7 6 10 10 C 1.50703 * 119.99719 * 185.26327 * 8 7 6 11 11 S 1.80999 * 109.47274 * 180.02562 * 10 8 7 12 12 C 1.76192 * 100.00323 * 180.02562 * 11 10 8 13 13 H 1.08005 * 120.00212 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00240 * 179.97438 * 12 11 10 15 15 N 1.31633 * 120.00038 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00129 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47134 * 90.00475 * 16 14 12 18 18 H 1.48501 * 109.47424 * 210.00445 * 16 14 12 19 19 H 1.48501 * 109.47386 * 330.00282 * 16 14 12 20 20 C 1.38938 * 119.31647 * 359.69927 * 6 5 4 21 21 C 1.39952 * 118.28100 * 0.55992 * 20 6 5 22 22 C 1.43198 * 120.56221 * 179.73382 * 21 20 6 23 23 N 3.53549 * 165.72006 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47094 * 299.99255 * 1 2 3 26 26 H 1.08998 * 109.47777 * 59.99759 * 1 2 3 27 27 H 1.08000 * 119.45066 * 179.97438 * 5 4 3 28 28 H 0.96997 * 119.99620 * 32.64177 * 7 6 5 29 29 H 1.08998 * 109.47470 * 300.00078 * 10 8 7 30 30 H 1.09000 * 109.46921 * 60.00542 * 10 8 7 31 31 H 0.96998 * 120.00031 * 179.97438 * 15 14 12 32 32 H 1.07992 * 120.85723 * 180.32539 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2078 0.0000 4 7 1.3192 2.3126 0.0005 5 6 1.8733 3.5095 0.0011 6 6 3.2541 3.6608 0.0005 7 7 3.8261 4.9405 0.0006 8 6 4.9982 5.1546 -0.6293 9 8 5.5104 4.2656 -1.2762 10 6 5.6724 6.4987 -0.5300 11 16 7.2148 6.4715 -1.4767 12 6 7.7765 8.1174 -1.1939 13 1 7.1921 8.7901 -0.5837 14 6 8.9706 8.5492 -1.7545 15 7 9.6831 7.7292 -2.4979 16 14 9.5664 10.2939 -1.4541 17 1 10.4152 10.3243 -0.2360 18 1 10.3600 10.7540 -2.6220 19 1 8.3978 11.1906 -1.2657 20 6 4.0624 2.5307 0.0058 21 6 3.4457 1.2744 -0.0006 22 6 4.2317 0.0775 -0.0013 23 7 4.8552 -0.8721 -0.0004 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.2429 4.3865 0.0011 28 1 3.3784 5.6717 0.4540 29 1 5.0126 7.2669 -0.9332 30 1 5.8909 6.7192 0.5149 31 1 10.5174 8.0310 -2.8900 32 1 5.1386 2.6195 0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906146221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:12 Heat of formation + Delta-G solvation = -25.697239 kcal Electronic energy + Delta-G solvation = -19408.671772 eV Core-core repulsion = 16074.636355 eV Total energy + Delta-G solvation = -3334.035417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.21644 -40.82151 -38.95187 -37.80291 -35.93572 -34.55806 -33.76577 -31.94934 -29.84371 -28.13593 -27.61305 -25.90990 -24.42910 -21.97700 -20.58996 -19.87750 -19.50106 -18.67788 -17.70906 -17.42835 -17.15563 -16.85195 -16.54002 -15.99593 -15.42358 -15.40765 -15.11939 -14.91618 -14.53714 -14.42938 -14.24426 -14.10506 -13.73689 -13.58025 -13.13721 -12.88006 -12.76086 -12.60881 -12.47207 -11.73259 -11.68342 -11.35246 -11.12037 -10.98840 -10.59389 -10.23875 -9.12611 -8.63343 -8.32733 -6.09859 -0.57863 -0.04866 1.24647 1.41962 1.44442 1.46220 1.49258 1.57602 1.83722 1.86281 2.15707 2.29384 2.61700 2.67673 3.02391 3.20969 3.30874 3.61238 3.76109 3.90144 4.13912 4.35905 4.37795 4.48520 4.50816 4.57613 4.79019 4.80394 4.91924 5.41995 5.45464 6.01348 6.22351 6.26285 6.34173 6.53653 7.08486 7.09859 8.76122 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.035883 B = 0.002922 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.119568 B = 9579.039089 C =10212.115032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.318 6.318 3 C 0.352 3.648 4 N -0.514 5.514 5 C 0.179 3.821 6 C 0.064 3.936 7 N -0.642 5.642 8 C 0.537 3.463 9 O -0.543 6.543 10 C -0.128 4.128 11 S -0.154 6.154 12 C -0.542 4.542 13 H 0.088 0.912 14 C 0.012 3.988 15 N -0.913 5.913 16 Si 0.996 3.004 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.255 1.255 20 C -0.007 4.007 21 C -0.096 4.096 22 C 0.283 3.717 23 N -0.451 5.451 24 H 0.118 0.882 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.221 0.779 28 H 0.439 0.561 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.270 0.730 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.016 -4.902 8.995 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C 0.171 3.829 4 N -0.237 5.237 5 C 0.019 3.981 6 C -0.033 4.033 7 N -0.292 5.292 8 C 0.325 3.675 9 O -0.418 6.418 10 C -0.279 4.279 11 S 0.073 5.927 12 C -0.690 4.690 13 H 0.106 0.894 14 C -0.193 4.193 15 N -0.550 5.550 16 Si 0.818 3.182 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.179 1.179 20 C -0.036 4.036 21 C -0.104 4.104 22 C -0.032 4.032 23 N -0.128 5.128 24 H 0.136 0.864 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.237 0.763 28 H 0.280 0.720 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.079 0.921 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.861 -8.199 7.839 24.629 hybrid contribution 0.718 2.435 0.720 2.639 sum -21.144 -5.764 8.560 23.528 Atomic orbital electron populations 1.23252 0.74378 1.05077 1.03493 1.86260 1.25633 1.23839 1.86636 1.19641 0.86956 0.85964 0.90379 1.67595 1.38317 0.97914 1.19827 1.23173 0.90078 0.95261 0.89635 1.18461 0.93394 0.85312 1.06153 1.43083 1.22197 1.09530 1.54421 1.20305 0.80577 0.89303 0.77356 1.90748 1.64415 1.46223 1.40463 1.23359 1.00995 0.97144 1.06439 1.85674 1.21320 1.19272 1.66409 1.23211 1.10443 0.97996 1.37311 0.89439 1.26108 0.95801 1.03304 0.94064 1.70183 1.14640 1.37842 1.32297 0.84981 0.78577 0.76768 0.77846 1.19546 1.20758 1.17859 1.21494 1.01585 0.89214 0.91352 1.15684 0.89212 0.88100 1.17365 1.25324 0.92654 0.92518 0.92694 1.81205 1.09471 1.11539 1.10550 0.86354 0.90885 0.91346 0.76286 0.71984 0.85972 0.86188 0.92143 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.38 113.37 1.18 1.53 16 2 O -0.32 -6.28 9.91 -88.52 -0.88 -7.15 16 3 C 0.35 7.20 7.50 85.14 0.64 7.84 16 4 N -0.51 -8.18 9.19 -307.48 -2.83 -11.01 16 5 C 0.18 2.15 11.10 84.85 0.94 3.09 16 6 C 0.06 1.16 6.30 38.14 0.24 1.40 16 7 N -0.64 -11.09 5.36 -303.24 -1.63 -12.72 16 8 C 0.54 15.90 7.61 87.66 0.67 16.57 16 9 O -0.54 -21.49 13.56 -3.05 -0.04 -21.53 16 10 C -0.13 -4.20 6.16 71.24 0.44 -3.77 16 11 S -0.15 -7.90 20.57 -56.49 -1.16 -9.06 16 12 C -0.54 -29.07 9.50 67.95 0.65 -28.43 16 13 H 0.09 4.28 7.80 -2.91 -0.02 4.25 16 14 C 0.01 0.65 5.49 84.86 0.47 1.12 16 15 N -0.91 -54.71 13.22 21.65 0.29 -54.42 16 16 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 17 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 20 C -0.01 -0.16 8.49 22.85 0.19 0.04 16 21 C -0.10 -2.33 5.76 -21.12 -0.12 -2.45 16 22 C 0.28 8.26 14.90 88.33 1.32 9.58 16 23 N -0.45 -15.01 18.54 19.00 0.35 -14.66 16 24 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.68 8.10 -2.39 -0.02 0.66 16 26 H 0.07 0.71 8.10 -2.39 -0.02 0.69 16 27 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 28 H 0.44 3.40 8.82 -92.71 -0.82 2.58 16 29 H 0.12 3.40 8.14 -2.40 -0.02 3.38 16 30 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.14 4.17 6.48 -2.91 -0.02 4.15 16 Total: -1.00 -78.97 314.54 3.11 -75.87 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.37 Total: 4.18 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.60 Total: 6.52 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -3.81 Total: -92.81 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.92 Total: -28.69 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.16 Total: -9.06 kcal Total: -78.97 3.11 -75.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906146221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.170 kcal (2) G-P(sol) polarization free energy of solvation -78.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds