Wall clock time and date at job start Tue Mar 31 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33275 * 125.51510 * 2 1 4 4 C 1.30962 * 109.80570 * 180.02562 * 3 2 1 5 5 Cl 1.73604 * 125.98539 * 179.97438 * 4 3 2 6 6 N 1.34523 * 108.03669 * 0.02562 * 4 3 2 7 7 C 1.46498 * 126.82459 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47235 * 89.99733 * 7 6 4 9 9 C 1.38305 * 119.92910 * 270.25475 * 8 7 6 10 10 C 1.38104 * 120.06272 * 180.25358 * 9 8 7 11 11 C 1.38874 * 119.93265 * 359.47314 * 10 9 8 12 12 O 1.35749 * 120.06890 * 180.29770 * 11 10 9 13 13 C 1.34834 * 117.00013 * 354.46142 * 12 11 10 14 14 H 1.07996 * 120.00021 * 5.05939 * 13 12 11 15 15 C 1.38654 * 119.99707 * 185.05824 * 13 12 11 16 16 N 1.31550 * 120.00182 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99577 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47369 * 59.99976 * 17 15 13 19 19 H 1.48494 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47275 * 300.00018 * 17 15 13 21 21 C 1.38882 * 119.86301 * 0.27303 * 11 10 9 22 22 C 1.38094 * 119.92975 * 0.02562 * 21 11 10 23 23 N 1.30683 * 125.51281 * 180.33301 * 2 1 3 24 24 H 1.09003 * 109.46992 * 90.02501 * 1 2 3 25 25 H 1.08997 * 109.47032 * 210.02123 * 1 2 3 26 26 H 1.08998 * 109.47186 * 330.02275 * 1 2 3 27 27 H 1.09006 * 109.47116 * 329.99883 * 7 6 4 28 28 H 1.08998 * 109.47244 * 210.00037 * 7 6 4 29 29 H 1.07990 * 119.96792 * 0.02562 * 9 8 7 30 30 H 1.08000 * 120.02708 * 179.74272 * 10 9 8 31 31 H 0.97006 * 119.99724 * 179.97438 * 16 15 13 32 32 H 1.08005 * 120.03486 * 180.02562 * 21 11 10 33 33 H 1.08006 * 119.96521 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2812 1.0848 0.0000 4 6 3.5419 0.7302 -0.0006 5 17 4.9042 1.8063 -0.0014 6 7 3.5965 -0.6139 -0.0015 7 6 4.8039 -1.4436 -0.0018 8 6 5.2177 -1.7291 1.4189 9 6 6.0819 -0.8691 2.0719 10 6 6.4670 -1.1309 3.3721 11 6 5.9770 -2.2530 4.0274 12 8 6.3490 -2.5097 5.3075 13 6 7.2841 -1.7018 5.8469 14 1 7.6419 -0.8457 5.2942 15 6 7.7861 -1.9701 7.1112 16 7 7.3498 -3.0126 7.7846 17 14 9.0810 -0.8504 7.8588 18 1 8.5381 0.5270 7.9733 19 1 9.4497 -1.3514 9.2072 20 1 10.2853 -0.8371 6.9899 21 6 5.1053 -3.1118 3.3706 22 6 4.7288 -2.8479 2.0684 23 7 2.2661 -1.0637 -0.0062 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3633 0.8902 0.5135 27 1 5.6076 -0.9155 -0.5152 28 1 4.5994 -2.3825 -0.5164 29 1 6.4587 0.0058 1.5635 30 1 7.1451 -0.4612 3.8801 31 1 7.7014 -3.2005 8.6689 32 1 4.7222 -3.9850 3.8777 33 1 4.0505 -3.5151 1.5573 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919732945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:52 Heat of formation + Delta-G solvation = 62.282493 kcal Electronic energy + Delta-G solvation = -20068.546129 eV Core-core repulsion = 16736.282093 eV Total energy + Delta-G solvation = -3332.264035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.24193 -40.88921 -38.67403 -38.28464 -35.65389 -34.31648 -32.77813 -31.99236 -31.76323 -29.45639 -27.62878 -26.44242 -23.79795 -23.39773 -22.20172 -21.84126 -19.93652 -19.01788 -18.29111 -17.49460 -16.79959 -16.52770 -16.33008 -15.99648 -15.59789 -15.27006 -14.89336 -14.56771 -14.36926 -14.13874 -13.86963 -13.62386 -13.35224 -13.18947 -13.10635 -12.99436 -12.60070 -12.59115 -12.40961 -12.35981 -12.17305 -11.29408 -11.26355 -10.93323 -10.83960 -10.45276 -9.90247 -9.12000 -8.52145 -6.21158 -0.14464 0.26809 0.46500 0.49749 1.33993 1.42105 1.50223 1.56584 1.63128 2.14601 2.76067 3.09143 3.29836 3.37845 3.40702 3.74663 3.89803 4.05931 4.19358 4.35143 4.48847 4.64439 4.75770 4.76874 4.85651 4.92859 5.01810 5.08752 5.16147 5.38651 5.39618 5.43321 5.60410 5.61152 5.96088 6.06419 6.79903 6.91979 7.69086 8.70254 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.003757 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.038854 B = 7450.263838 C = 7966.815555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.217 3.783 3 N -0.548 5.548 4 C 0.305 3.695 5 Cl 0.069 6.931 6 N -0.353 5.353 7 C 0.178 3.822 8 C -0.202 4.202 9 C -0.042 4.042 10 C -0.245 4.245 11 C 0.128 3.872 12 O -0.226 6.226 13 C -0.418 4.418 14 H 0.105 0.895 15 C -0.019 4.019 16 N -0.917 5.917 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.255 1.255 21 C -0.209 4.209 22 C -0.036 4.036 23 N -0.315 5.315 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.274 0.726 32 H 0.115 0.885 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 7.272 -18.143 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.065 4.065 3 N -0.280 5.280 4 C 0.004 3.996 5 Cl 0.096 6.904 6 N -0.146 5.146 7 C 0.058 3.942 8 C -0.204 4.204 9 C -0.061 4.061 10 C -0.264 4.264 11 C 0.076 3.924 12 O -0.131 6.131 13 C -0.494 4.494 14 H 0.122 0.878 15 C -0.218 4.218 16 N -0.554 5.554 17 Si 0.837 3.163 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.179 1.179 21 C -0.228 4.228 22 C -0.054 4.054 23 N -0.145 5.145 24 H 0.123 0.877 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.142 0.858 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.296 6.636 -17.806 20.018 hybrid contribution 1.120 0.357 0.968 1.523 sum -5.176 6.994 -16.839 18.954 Atomic orbital electron populations 1.20312 0.80705 1.05145 1.05330 1.25023 0.99897 0.84502 0.97058 1.70328 0.98916 1.32007 1.26720 1.24618 0.91378 0.83194 1.00419 1.98454 1.35562 1.59839 1.96544 1.50876 1.06905 1.03900 1.52957 1.20897 0.81974 0.97223 0.94066 1.19614 1.04806 0.98764 0.97175 1.20946 0.94687 0.97748 0.92674 1.21242 1.07674 1.00063 0.97455 1.19989 0.93560 0.94019 0.84798 1.83950 1.53147 1.53604 1.22444 1.21830 1.17660 1.08509 1.01396 0.87805 1.26613 1.00534 0.98869 0.95741 1.70172 1.43548 1.28428 1.13300 0.84654 0.76800 0.77260 0.77581 1.18174 1.19609 1.17894 1.20445 1.04226 1.01611 0.96527 1.20857 0.96149 0.96294 0.92119 1.78112 0.86334 1.22592 1.27505 0.87684 0.88809 0.88639 0.85191 0.85304 0.84233 0.85830 0.91664 0.86680 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.22 5.63 8.14 138.63 1.13 6.76 16 3 N -0.55 -15.64 11.20 -182.58 -2.04 -17.68 16 4 C 0.31 8.14 8.59 180.29 1.55 9.69 16 5 Cl 0.07 1.46 28.38 -2.72 -0.08 1.38 16 6 N -0.35 -9.23 3.62 -345.42 -1.25 -10.48 16 7 C 0.18 3.82 6.46 85.63 0.55 4.37 16 8 C -0.20 -5.92 5.47 -19.83 -0.11 -6.02 16 9 C -0.04 -1.36 9.69 22.25 0.22 -1.14 16 10 C -0.25 -10.27 9.17 22.39 0.21 -10.06 16 11 C 0.13 6.23 6.65 22.58 0.15 6.38 16 12 O -0.23 -13.39 9.76 -22.77 -0.22 -13.61 16 13 C -0.42 -23.89 9.49 67.92 0.64 -23.25 16 14 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 15 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 16 N -0.92 -55.55 13.67 21.61 0.30 -55.25 16 17 Si 1.02 41.88 29.55 68.60 2.03 43.91 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 21 C -0.21 -8.74 9.99 22.39 0.22 -8.51 16 22 C -0.04 -1.17 9.69 22.25 0.22 -0.95 16 23 N -0.32 -8.80 12.70 -51.33 -0.65 -9.45 16 24 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.13 2.06 7.80 -2.38 -0.02 2.04 16 28 H 0.13 2.25 8.08 -2.39 -0.02 2.23 16 29 H 0.14 3.59 7.59 -2.92 -0.02 3.57 16 30 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 31 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 32 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 33 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -72.84 312.71 5.22 -67.62 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.15 Total: 17.09 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 5.99 Total: -23.52 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -3.65 Total: -92.87 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.22 Total: -13.61 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 17 Polarization: 1.46 SS G_CDS: -0.08 Total: 1.38 kcal Total: -72.84 5.22 -67.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919732945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.900 kcal (2) G-P(sol) polarization free energy of solvation -72.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds