Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99451 * 2 1 4 4 H 1.48504 * 109.47103 * 274.21338 * 3 2 1 5 5 H 1.48498 * 109.47518 * 34.21754 * 3 2 1 6 6 H 1.48500 * 109.46804 * 154.21602 * 3 2 1 7 7 C 1.37871 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00331 * 353.34660 * 7 2 1 9 9 C 1.50706 * 119.99745 * 173.33990 * 7 2 1 10 10 C 1.53001 * 115.54549 * 92.70292 * 9 7 2 11 11 S 1.80994 * 109.47357 * 39.82047 * 10 9 7 12 12 C 1.76205 * 99.99956 * 175.10717 * 11 10 9 13 13 N 1.30904 * 124.96788 * 179.97438 * 12 11 10 14 14 C 1.36187 * 108.68756 * 180.02562 * 13 12 11 15 15 C 1.39545 * 133.62737 * 180.02562 * 14 13 12 16 16 C 1.37776 * 119.76277 * 179.97438 * 15 14 13 17 17 C 1.38824 * 120.36670 * 0.02562 * 16 15 14 18 18 F 1.35105 * 119.79293 * 180.02562 * 17 16 15 19 19 C 1.38218 * 120.40961 * 359.97438 * 17 16 15 20 20 C 1.38542 * 119.87780 * 0.03959 * 19 17 16 21 21 O 1.34525 * 124.97068 * 0.02562 * 12 11 10 22 22 C 1.52997 * 117.51849 * 238.40164 * 9 7 2 23 23 C 1.52995 * 117.50050 * 307.03566 * 9 7 2 24 24 H 0.97005 * 120.00482 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47134 * 279.81481 * 10 9 7 26 26 H 1.09001 * 109.46627 * 159.82315 * 10 9 7 27 27 H 1.08001 * 120.12139 * 359.97438 * 15 14 13 28 28 H 1.08004 * 119.81314 * 179.72542 * 16 15 14 29 29 H 1.07996 * 120.05754 * 180.02562 * 19 17 16 30 30 H 1.08998 * 117.50074 * 214.97000 * 22 9 7 31 31 H 1.08997 * 117.49929 * 359.97438 * 22 9 7 32 32 H 1.09008 * 117.50112 * 359.97122 * 23 9 7 33 33 H 1.08994 * 117.50354 * 144.97539 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4074 2.0979 -1.3963 5 1 1.4939 2.6253 0.7873 6 1 3.5883 1.4162 0.6090 7 6 2.0045 -1.1940 -0.0005 8 1 1.4700 -2.1262 0.1074 9 6 3.5040 -1.1983 -0.1519 10 6 4.2991 -1.1858 1.1552 11 16 3.4910 -2.2643 2.3634 12 6 4.6612 -2.1817 3.6781 13 7 4.5472 -2.8041 4.8241 14 6 5.6330 -2.5083 5.5912 15 6 6.0356 -2.8807 6.8743 16 6 7.2215 -2.4006 7.3854 17 6 8.0169 -1.5486 6.6312 18 9 9.1779 -1.0850 7.1435 19 6 7.6288 -1.1725 5.3590 20 6 6.4388 -1.6471 4.8319 21 8 5.8018 -1.4690 3.6515 22 6 4.0933 -1.9765 -1.3299 23 6 4.0956 -0.4466 -1.3459 24 1 -0.4851 0.8400 0.0004 25 1 4.3400 -0.1690 1.5459 26 1 5.3114 -1.5441 0.9680 27 1 5.4198 -3.5430 7.4647 28 1 7.5318 -2.6848 8.3801 29 1 8.2521 -0.5097 4.7771 30 1 5.0476 -2.4796 -1.1739 31 1 3.3966 -2.4860 -1.9955 32 1 3.4003 0.0507 -2.0224 33 1 5.0511 0.0571 -1.2003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919853358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = 22.096683 kcal Electronic energy + Delta-G solvation = -19970.618203 eV Core-core repulsion = 16618.735325 eV Total energy + Delta-G solvation = -3351.882878 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.16212 -43.07353 -37.86253 -37.22875 -34.53907 -32.31401 -31.03015 -29.45021 -28.40116 -25.73784 -24.23295 -23.09825 -22.09950 -21.83696 -19.41445 -18.77429 -18.09271 -17.19679 -16.84275 -16.63620 -15.93943 -15.72402 -15.13366 -15.03730 -14.43893 -14.07741 -13.93496 -13.40637 -13.34413 -13.13471 -12.79592 -12.36820 -12.32329 -11.65944 -11.50987 -11.27769 -10.96684 -10.62490 -10.50289 -10.44203 -10.32033 -9.82830 -9.29831 -9.16783 -8.90302 -8.79462 -8.63929 -7.22385 -6.32368 -4.37615 0.41992 0.92775 1.20244 2.14042 2.23774 3.11020 3.15772 3.27336 3.27971 3.36550 4.03172 4.24107 4.31992 4.46939 4.66566 4.71232 4.84024 4.95142 5.18574 5.39074 5.52622 5.60331 5.71929 5.79133 5.87678 5.91432 5.92448 6.06725 6.11459 6.30590 6.40590 6.50512 6.73023 6.94306 7.47560 7.49861 8.23565 8.70509 9.29401 10.77996 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.003943 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.557730 B = 7099.022587 C = 7255.547025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.090 3.910 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.087 0.913 9 C 0.006 3.994 10 C -0.101 4.101 11 S 0.145 5.855 12 C 0.216 3.784 13 N -0.479 5.479 14 C 0.035 3.965 15 C -0.041 4.041 16 C -0.148 4.148 17 C 0.109 3.891 18 F -0.132 7.132 19 C -0.124 4.124 20 C 0.023 3.977 21 O -0.210 6.210 22 C -0.173 4.173 23 C -0.189 4.189 24 H 0.269 0.731 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.926 -2.708 9.422 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.116 4.116 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.537 4.537 8 H 0.105 0.895 9 C 0.003 3.997 10 C -0.250 4.250 11 S 0.382 5.618 12 C -0.099 4.099 13 N -0.213 5.213 14 C -0.079 4.079 15 C -0.061 4.061 16 C -0.168 4.168 17 C 0.089 3.911 18 F -0.111 7.111 19 C -0.144 4.144 20 C -0.031 4.031 21 O -0.104 6.104 22 C -0.211 4.211 23 C -0.228 4.228 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.164 0.836 28 H 0.165 0.835 29 H 0.163 0.837 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.219 -3.574 9.511 15.892 hybrid contribution 2.332 2.302 -0.121 3.279 sum 14.552 -1.272 9.390 17.365 Atomic orbital electron populations 1.69885 1.06444 1.27656 1.47386 1.24970 0.94529 0.99069 0.93061 0.86894 0.80719 0.83441 0.78527 1.20165 1.21659 1.18339 1.20218 0.86320 0.95161 1.52032 0.89527 1.19020 0.95154 1.01789 0.83738 1.23830 1.00642 1.01555 0.98988 1.87350 1.15464 1.57702 1.01312 1.30352 0.88167 0.89968 1.01399 1.71153 1.22685 1.25721 1.01768 1.20077 0.92248 0.98918 0.96642 1.20100 0.95293 0.98885 0.91818 1.20946 0.95021 0.99580 1.01263 1.16998 0.83918 0.98205 0.92025 1.91521 1.45640 1.87262 1.86627 1.19503 0.95174 1.04517 0.95196 1.19825 0.96246 1.01086 0.85983 1.84803 1.31322 1.60110 1.34211 1.22958 1.00992 0.93242 1.03862 1.23001 1.01287 0.94859 1.03659 0.92084 0.89138 0.90443 0.83577 0.83470 0.83747 0.90619 0.88886 0.88836 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 13.96 55.43 0.77 -24.08 16 2 C 0.09 2.35 5.46 -17.82 -0.10 2.26 16 3 Si 0.88 20.11 24.98 -169.99 -4.25 15.87 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -5.58 5.47 56.52 0.31 -5.28 16 7 C -0.50 -12.49 8.14 -34.44 -0.28 -12.77 16 8 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 9 C 0.01 0.12 1.12 -155.66 -0.17 -0.06 16 10 C -0.10 -1.91 5.21 37.16 0.19 -1.72 16 11 S 0.14 2.76 21.15 -107.50 -2.27 0.48 16 12 C 0.22 3.97 8.28 52.37 0.43 4.40 16 13 N -0.48 -8.76 11.39 -11.45 -0.13 -8.89 16 14 C 0.04 0.56 7.23 -84.68 -0.61 -0.05 16 15 C -0.04 -0.48 10.10 -39.26 -0.40 -0.88 16 16 C -0.15 -1.48 10.00 -39.53 -0.40 -1.88 16 17 C 0.11 1.23 7.29 -39.37 -0.29 0.95 16 18 F -0.13 -1.45 17.26 2.25 0.04 -1.41 16 19 C -0.12 -1.56 10.03 -39.48 -0.40 -1.96 16 20 C 0.02 0.36 7.41 -38.71 -0.29 0.07 16 21 O -0.21 -3.67 10.17 2.27 0.02 -3.65 16 22 C -0.17 -3.16 9.88 -26.73 -0.26 -3.42 16 23 C -0.19 -3.62 7.53 -26.73 -0.20 -3.82 16 24 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.09 1.76 6.59 -51.92 -0.34 1.42 16 26 H 0.08 1.29 7.95 -51.92 -0.41 0.88 16 27 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.08 1.20 8.08 -51.93 -0.42 0.78 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.09 1.90 6.99 -51.92 -0.36 1.53 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 302.70 15.07 4.56 4.56 Total: -1.00 -27.88 302.70 -7.32 -35.20 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -3.30 Total: 0.79 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.76 Total: -18.88 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.64 Total: -32.97 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: 0.02 Total: -3.65 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.25 Total: 15.87 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.27 Total: 0.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.88 -7.32 -35.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919853358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.300 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds