Wall clock time and date at job start Tue Mar 31 2020 06:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99451 * 2 1 4 4 H 1.48504 * 109.47103 * 274.21338 * 3 2 1 5 5 H 1.48498 * 109.47518 * 34.21754 * 3 2 1 6 6 H 1.48500 * 109.46804 * 154.21602 * 3 2 1 7 7 C 1.37871 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00331 * 353.34660 * 7 2 1 9 9 C 1.50706 * 119.99745 * 173.33990 * 7 2 1 10 10 C 1.53001 * 115.54549 * 92.70292 * 9 7 2 11 11 S 1.80994 * 109.47357 * 39.82047 * 10 9 7 12 12 C 1.76205 * 99.99956 * 175.10717 * 11 10 9 13 13 N 1.30904 * 124.96788 * 179.97438 * 12 11 10 14 14 C 1.36187 * 108.68756 * 180.02562 * 13 12 11 15 15 C 1.39545 * 133.62737 * 180.02562 * 14 13 12 16 16 C 1.37776 * 119.76277 * 179.97438 * 15 14 13 17 17 C 1.38824 * 120.36670 * 0.02562 * 16 15 14 18 18 F 1.35105 * 119.79293 * 180.02562 * 17 16 15 19 19 C 1.38218 * 120.40961 * 359.97438 * 17 16 15 20 20 C 1.38542 * 119.87780 * 0.03959 * 19 17 16 21 21 O 1.34525 * 124.97068 * 0.02562 * 12 11 10 22 22 C 1.52997 * 117.51849 * 238.40164 * 9 7 2 23 23 C 1.52995 * 117.50050 * 307.03566 * 9 7 2 24 24 H 0.97005 * 120.00482 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47134 * 279.81481 * 10 9 7 26 26 H 1.09001 * 109.46627 * 159.82315 * 10 9 7 27 27 H 1.08001 * 120.12139 * 359.97438 * 15 14 13 28 28 H 1.08004 * 119.81314 * 179.72542 * 16 15 14 29 29 H 1.07996 * 120.05754 * 180.02562 * 19 17 16 30 30 H 1.08998 * 117.50074 * 214.97000 * 22 9 7 31 31 H 1.08997 * 117.49929 * 359.97438 * 22 9 7 32 32 H 1.09008 * 117.50112 * 359.97122 * 23 9 7 33 33 H 1.08994 * 117.50354 * 144.97539 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4074 2.0979 -1.3963 5 1 1.4939 2.6253 0.7873 6 1 3.5883 1.4162 0.6090 7 6 2.0045 -1.1940 -0.0005 8 1 1.4700 -2.1262 0.1074 9 6 3.5040 -1.1983 -0.1519 10 6 4.2991 -1.1858 1.1552 11 16 3.4910 -2.2643 2.3634 12 6 4.6612 -2.1817 3.6781 13 7 4.5472 -2.8041 4.8241 14 6 5.6330 -2.5083 5.5912 15 6 6.0356 -2.8807 6.8743 16 6 7.2215 -2.4006 7.3854 17 6 8.0169 -1.5486 6.6312 18 9 9.1779 -1.0850 7.1435 19 6 7.6288 -1.1725 5.3590 20 6 6.4388 -1.6471 4.8319 21 8 5.8018 -1.4690 3.6515 22 6 4.0933 -1.9765 -1.3299 23 6 4.0956 -0.4466 -1.3459 24 1 -0.4851 0.8400 0.0004 25 1 4.3400 -0.1690 1.5459 26 1 5.3114 -1.5441 0.9680 27 1 5.4198 -3.5430 7.4647 28 1 7.5318 -2.6848 8.3801 29 1 8.2521 -0.5097 4.7771 30 1 5.0476 -2.4796 -1.1739 31 1 3.3966 -2.4860 -1.9955 32 1 3.4003 0.0507 -2.0224 33 1 5.0511 0.0571 -1.2003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919853358.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:47 Heat of formation + Delta-G solvation = 4.523055 kcal Electronic energy + Delta-G solvation = -19971.380253 eV Core-core repulsion = 16618.735325 eV Total energy + Delta-G solvation = -3352.644928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.06905 -44.27780 -38.88673 -38.80878 -35.77220 -34.28049 -32.01031 -30.56416 -29.87939 -27.61892 -25.40054 -24.18622 -23.34432 -23.22279 -21.09196 -19.87279 -19.34530 -18.52773 -18.08172 -17.98111 -17.25847 -16.83932 -16.63801 -16.12216 -15.58242 -15.58050 -15.20687 -14.98696 -14.67906 -14.35370 -14.15852 -13.83585 -13.44988 -13.05638 -12.79739 -12.64986 -12.59266 -12.15338 -12.08476 -11.95810 -11.70233 -11.56556 -10.91928 -10.73977 -10.32657 -10.19931 -9.95628 -8.61105 -8.32701 -6.40558 -0.65708 -0.18556 -0.05458 0.79323 1.03028 1.33922 1.38996 1.47782 1.86967 2.34113 2.34457 3.00301 3.05448 3.15682 3.27896 3.47460 3.79173 3.84122 3.88507 4.10378 4.19900 4.35487 4.40614 4.55202 4.60960 4.72223 4.85575 4.86627 4.91155 4.99063 5.05213 5.19195 5.47265 5.48491 5.64394 6.24295 6.26356 6.68539 7.29884 8.81976 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024959 B = 0.003943 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.557730 B = 7099.022587 C = 7255.547025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.036 3.964 3 Si 0.927 3.073 4 H -0.266 1.266 5 H -0.300 1.300 6 H -0.233 1.233 7 C -0.489 4.489 8 H 0.044 0.956 9 C -0.023 4.023 10 C -0.086 4.086 11 S 0.107 5.893 12 C 0.206 3.794 13 N -0.493 5.493 14 C 0.002 3.998 15 C -0.036 4.036 16 C -0.128 4.128 17 C 0.123 3.877 18 F -0.125 7.125 19 C -0.131 4.131 20 C 0.004 3.996 21 O -0.218 6.218 22 C -0.156 4.156 23 C -0.182 4.182 24 H 0.267 0.733 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.189 0.811 29 H 0.161 0.839 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.775 -2.422 11.109 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.164 4.164 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.228 1.228 6 H -0.156 1.156 7 C -0.529 4.529 8 H 0.062 0.938 9 C -0.026 4.026 10 C -0.235 4.235 11 S 0.342 5.658 12 C -0.111 4.111 13 N -0.228 5.228 14 C -0.112 4.112 15 C -0.056 4.056 16 C -0.148 4.148 17 C 0.102 3.898 18 F -0.103 7.103 19 C -0.151 4.151 20 C -0.049 4.049 21 O -0.112 6.112 22 C -0.193 4.193 23 C -0.221 4.221 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.188 0.812 28 H 0.206 0.794 29 H 0.179 0.821 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 16.110 -3.292 11.192 19.890 hybrid contribution 1.302 2.076 -0.419 2.486 sum 17.412 -1.216 10.772 20.511 Atomic orbital electron populations 1.70026 1.08329 1.28251 1.50752 1.25722 0.95005 1.02472 0.93160 0.86079 0.80542 0.79239 0.78979 1.19075 1.22791 1.15630 1.20294 0.88905 0.93245 1.50411 0.93819 1.18919 0.92893 1.05151 0.85607 1.23660 1.01414 1.01150 0.97295 1.87423 1.17086 1.58721 1.02578 1.29724 0.88748 0.91453 1.01151 1.71056 1.23986 1.25635 1.02091 1.20524 0.92012 1.00411 0.98234 1.20490 0.96012 0.98680 0.90398 1.21368 0.93416 0.97537 1.02454 1.17130 0.83815 0.97333 0.91473 1.91553 1.45299 1.87094 1.86379 1.19736 0.94454 1.04843 0.96018 1.20200 0.97231 1.01945 0.85525 1.84731 1.31096 1.60078 1.35298 1.23012 1.01860 0.93104 1.01321 1.23063 1.01980 0.95567 1.01470 0.92349 0.89722 0.87689 0.81243 0.79386 0.82115 0.87259 0.89844 0.90262 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.67 13.96 21.45 0.30 -55.37 16 2 C 0.04 1.98 5.46 84.65 0.46 2.44 16 3 Si 0.93 41.55 24.98 68.60 1.71 43.27 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.23 -9.38 5.47 99.48 0.54 -8.84 16 7 C -0.49 -25.42 8.14 25.60 0.21 -25.21 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 9 C -0.02 -0.95 1.12 -52.93 -0.06 -1.01 16 10 C -0.09 -3.17 5.21 71.98 0.38 -2.79 16 11 S 0.11 4.15 21.15 -56.49 -1.20 2.96 16 12 C 0.21 7.56 8.28 130.38 1.08 8.64 16 13 N -0.49 -17.96 11.39 -304.31 -3.47 -21.43 16 14 C 0.00 0.06 7.23 39.28 0.28 0.34 16 15 C -0.04 -0.74 10.10 22.48 0.23 -0.51 16 16 C -0.13 -1.98 10.00 22.30 0.22 -1.75 16 17 C 0.12 2.29 7.29 22.41 0.16 2.46 16 18 F -0.12 -2.20 17.26 44.97 0.78 -1.43 16 19 C -0.13 -2.94 10.03 22.34 0.22 -2.71 16 20 C 0.00 0.13 7.41 22.84 0.17 0.30 16 21 O -0.22 -7.44 10.17 -14.81 -0.15 -7.60 16 22 C -0.16 -5.38 9.88 30.59 0.30 -5.08 16 23 C -0.18 -6.51 7.53 30.59 0.23 -6.28 16 24 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 25 H 0.08 3.16 6.59 -2.39 -0.02 3.14 16 26 H 0.10 3.23 7.95 -2.39 -0.02 3.21 16 27 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 29 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 30 H 0.11 3.06 8.08 -2.39 -0.02 3.04 16 31 H 0.08 3.02 8.14 -2.39 -0.02 3.01 16 32 H 0.08 3.08 6.99 -2.38 -0.02 3.06 16 33 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -63.94 302.70 2.85 -61.09 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.98 Total: 9.69 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.89 Total: -31.17 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.17 Total: -76.80 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.15 Total: -7.60 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.71 Total: 43.27 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.20 Total: 2.96 kcal Total: -63.94 2.85 -61.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919853358.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.609 kcal (2) G-P(sol) polarization free energy of solvation -63.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds