Wall clock time and date at job start Tue Mar 31 2020 07:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46976 * 2 1 4 4 C 1.52996 * 109.47410 * 120.00060 * 2 1 3 5 5 N 1.46492 * 109.47111 * 174.23915 * 4 2 1 6 6 C 1.46499 * 119.99929 * 276.59680 * 5 4 2 7 7 C 1.50706 * 109.47560 * 270.00162 * 6 5 4 8 8 H 1.07997 * 119.99604 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99949 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00016 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00154 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47351 * 90.00140 * 11 9 7 13 13 H 1.48510 * 109.47093 * 209.99981 * 11 9 7 14 14 H 1.48502 * 109.47210 * 329.99537 * 11 9 7 15 15 C 1.34779 * 120.00018 * 96.60766 * 5 4 2 16 16 O 1.21277 * 120.00228 * 185.42072 * 15 5 4 17 17 C 1.50703 * 119.99864 * 5.41540 * 15 5 4 18 18 H 1.09000 * 115.56175 * 321.15768 * 17 15 5 19 19 C 1.52996 * 117.49821 * 175.46755 * 17 15 5 20 20 C 1.52996 * 60.00045 * 252.51269 * 19 17 15 21 21 Cl 1.80301 * 117.50049 * 107.49004 * 20 19 17 22 22 Cl 1.80304 * 117.49740 * 252.51375 * 20 19 17 23 23 H 1.08996 * 109.46936 * 300.00087 * 1 2 3 24 24 H 1.09003 * 109.47157 * 60.00349 * 1 2 3 25 25 H 1.09004 * 109.46681 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47178 * 240.00374 * 2 1 3 27 27 H 1.09003 * 109.46731 * 304.57768 * 3 2 1 28 28 H 1.08993 * 109.46804 * 64.57554 * 3 2 1 29 29 H 1.08993 * 109.46831 * 184.57815 * 3 2 1 30 30 H 1.09005 * 109.46790 * 54.23559 * 4 2 1 31 31 H 1.09001 * 109.46765 * 294.24459 * 4 2 1 32 32 H 1.08996 * 109.47478 * 30.00951 * 6 5 4 33 33 H 1.09006 * 109.46762 * 150.00653 * 6 5 4 34 34 H 0.96993 * 120.00487 * 180.02562 * 10 9 7 35 35 H 1.08999 * 117.50035 * 145.01910 * 19 17 15 36 36 H 1.09003 * 117.50060 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4984 -0.8424 1.1818 6 6 4.1081 -1.9414 0.4291 7 6 4.3041 -3.1262 1.3397 8 1 4.0040 -3.0666 2.3754 9 6 4.8663 -4.2861 0.8504 10 7 5.0369 -5.3202 1.6449 11 14 5.3860 -4.3889 -0.9409 12 1 6.7964 -3.9435 -1.0736 13 1 5.2636 -5.7919 -1.4121 14 1 4.5110 -3.5132 -1.7612 15 6 4.2793 0.0571 1.8125 16 8 5.4837 0.0154 1.6767 17 6 3.6556 1.1146 2.6865 18 1 2.7240 1.5419 2.3157 19 6 4.5988 2.0392 3.4588 20 6 3.8083 0.9597 4.2009 21 17 4.7206 -0.4741 4.8034 22 17 2.4333 1.4980 5.2356 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6112 1.9794 -0.8462 28 1 1.7451 1.9321 0.9281 29 1 3.1269 1.4436 -0.0820 30 1 1.5949 -1.7148 1.3022 31 1 1.7633 -0.1513 2.1362 32 1 3.4550 -2.2223 -0.3971 33 1 5.0734 -1.6214 0.0366 34 1 5.4328 -6.1361 1.3009 35 1 4.2877 3.0748 3.5960 36 1 5.6704 1.8829 3.3344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920970002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:48 Heat of formation + Delta-G solvation = -25.994783 kcal Electronic energy + Delta-G solvation = -20226.504979 eV Core-core repulsion = 16991.520448 eV Total energy + Delta-G solvation = -3234.984532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86735 -37.29396 -36.43837 -35.89623 -35.00512 -33.70775 -32.27905 -28.56010 -27.20926 -25.89447 -24.36392 -22.26041 -21.60573 -20.36940 -18.38238 -17.49590 -16.90591 -15.89325 -15.58085 -14.89334 -14.50778 -14.35475 -13.92072 -13.37649 -13.23406 -12.83398 -12.73087 -12.42099 -12.36506 -11.92479 -11.86279 -11.73972 -11.59842 -11.18560 -11.07623 -11.02583 -10.81893 -10.77737 -10.56871 -10.51193 -10.38379 -10.13871 -9.80500 -9.53734 -9.17591 -8.58467 -7.75858 -6.07735 -4.06529 1.18100 2.21446 2.70556 3.28402 3.34094 3.36268 3.49785 3.71473 4.25283 4.37367 4.39626 4.80107 4.91650 5.01145 5.11590 5.24439 5.26200 5.43769 5.57592 5.61847 5.72397 5.76836 5.87563 5.97405 6.08823 6.17582 6.33043 6.42882 6.66740 6.91678 7.27392 7.60056 8.14806 8.46458 8.81722 8.98374 9.52107 11.05497 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.006801 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.978714 B = 4116.171112 C = 5217.148814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.149 4.149 4 C 0.113 3.887 5 N -0.579 5.579 6 C 0.217 3.783 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.542 3.458 16 O -0.526 6.526 17 C -0.163 4.163 18 H 0.145 0.855 19 C -0.118 4.118 20 C 0.015 3.985 21 Cl -0.060 7.060 22 Cl -0.101 7.101 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.124 0.876 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.226 15.940 1.145 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.206 4.206 4 C -0.011 4.011 5 N -0.309 5.309 6 C 0.097 3.903 7 C -0.566 4.566 8 H 0.096 0.904 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.327 3.673 16 O -0.403 6.403 17 C -0.185 4.185 18 H 0.162 0.838 19 C -0.156 4.156 20 C -0.037 4.037 21 Cl -0.032 7.032 22 Cl -0.074 7.074 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.544 15.604 1.193 17.373 hybrid contribution 0.054 -0.374 -0.686 0.783 sum -7.490 15.230 0.507 16.980 Atomic orbital electron populations 1.21763 0.94727 1.02064 1.01526 1.21583 0.95739 0.96486 0.99957 1.21961 1.01492 0.96036 1.01149 1.21625 0.81090 1.01721 0.96712 1.47724 1.05513 1.26972 1.50676 1.19689 0.94043 0.84642 0.91929 1.21319 1.41364 0.95538 0.98336 0.90432 1.24830 0.95057 0.95512 0.97472 1.69891 1.44334 1.03718 1.35478 0.86906 0.79898 0.77432 0.85772 1.19957 1.21103 1.19087 1.18917 0.86709 0.81353 0.80368 1.90683 1.13960 1.72833 1.62792 1.23601 1.03551 1.01095 0.90284 0.83774 1.23899 1.00705 0.95343 0.95603 1.26489 0.92710 0.94687 0.89811 1.98823 1.73698 1.41354 1.89365 1.98734 1.47745 1.89669 1.71224 0.92708 0.92738 0.92281 0.90455 0.92666 0.92894 0.92476 0.89605 0.91172 0.95137 0.94440 0.92602 0.85840 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.12 -1.49 3.11 -90.62 -0.28 -1.77 16 3 C -0.15 -1.68 7.83 37.16 0.29 -1.39 16 4 C 0.11 1.74 4.86 -4.05 -0.02 1.72 16 5 N -0.58 -11.42 2.26 -175.06 -0.40 -11.81 16 6 C 0.22 5.16 4.29 -5.19 -0.02 5.14 16 7 C -0.53 -14.84 9.94 -34.44 -0.34 -15.19 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 11 Si 0.87 21.40 27.47 -169.99 -4.67 16.73 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 15 C 0.54 10.45 5.26 -10.98 -0.06 10.39 16 16 O -0.53 -12.13 15.82 5.56 0.09 -12.04 16 17 C -0.16 -2.34 4.23 -91.77 -0.39 -2.73 16 18 H 0.14 1.69 4.39 -51.93 -0.23 1.47 16 19 C -0.12 -1.44 9.73 -26.74 -0.26 -1.70 16 20 C 0.02 0.22 3.61 -26.73 -0.10 0.12 16 21 Cl -0.06 -1.08 28.31 -51.86 -1.47 -2.55 16 22 Cl -0.10 -1.24 29.29 -51.86 -1.52 -2.76 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 1.09 8.02 -51.93 -0.42 0.67 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.52 6.26 -51.93 -0.33 0.19 16 29 H 0.06 0.75 6.96 -51.93 -0.36 0.39 16 30 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 31 H 0.07 0.96 6.14 -51.93 -0.32 0.64 16 32 H 0.03 0.69 7.01 -51.93 -0.36 0.33 16 33 H 0.04 0.95 6.78 -51.93 -0.35 0.60 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.13 1.78 7.68 -51.93 -0.40 1.38 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -32.21 323.81 -8.13 -40.35 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.89 Total: -1.60 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.93 Total: -4.48 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.38 Total: -38.52 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -2.99 Total: -5.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.21 -8.13 -40.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920970002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.353 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds