Wall clock time and date at job start Tue Mar 31 2020 07:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46976 * 2 1 4 4 C 1.52996 * 109.47410 * 120.00060 * 2 1 3 5 5 N 1.46492 * 109.47111 * 174.23915 * 4 2 1 6 6 C 1.46499 * 119.99929 * 276.59680 * 5 4 2 7 7 C 1.50706 * 109.47560 * 270.00162 * 6 5 4 8 8 H 1.07997 * 119.99604 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99949 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00016 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00154 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47351 * 90.00140 * 11 9 7 13 13 H 1.48510 * 109.47093 * 209.99981 * 11 9 7 14 14 H 1.48502 * 109.47210 * 329.99537 * 11 9 7 15 15 C 1.34779 * 120.00018 * 96.60766 * 5 4 2 16 16 O 1.21277 * 120.00228 * 185.42072 * 15 5 4 17 17 C 1.50703 * 119.99864 * 5.41540 * 15 5 4 18 18 H 1.09000 * 115.56175 * 321.15768 * 17 15 5 19 19 C 1.52996 * 117.49821 * 175.46755 * 17 15 5 20 20 C 1.52996 * 60.00045 * 252.51269 * 19 17 15 21 21 Cl 1.80301 * 117.50049 * 107.49004 * 20 19 17 22 22 Cl 1.80304 * 117.49740 * 252.51375 * 20 19 17 23 23 H 1.08996 * 109.46936 * 300.00087 * 1 2 3 24 24 H 1.09003 * 109.47157 * 60.00349 * 1 2 3 25 25 H 1.09004 * 109.46681 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47178 * 240.00374 * 2 1 3 27 27 H 1.09003 * 109.46731 * 304.57768 * 3 2 1 28 28 H 1.08993 * 109.46804 * 64.57554 * 3 2 1 29 29 H 1.08993 * 109.46831 * 184.57815 * 3 2 1 30 30 H 1.09005 * 109.46790 * 54.23559 * 4 2 1 31 31 H 1.09001 * 109.46765 * 294.24459 * 4 2 1 32 32 H 1.08996 * 109.47478 * 30.00951 * 6 5 4 33 33 H 1.09006 * 109.46762 * 150.00653 * 6 5 4 34 34 H 0.96993 * 120.00487 * 180.02562 * 10 9 7 35 35 H 1.08999 * 117.50035 * 145.01910 * 19 17 15 36 36 H 1.09003 * 117.50060 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4984 -0.8424 1.1818 6 6 4.1081 -1.9414 0.4291 7 6 4.3041 -3.1262 1.3397 8 1 4.0040 -3.0666 2.3754 9 6 4.8663 -4.2861 0.8504 10 7 5.0369 -5.3202 1.6449 11 14 5.3860 -4.3889 -0.9409 12 1 6.7964 -3.9435 -1.0736 13 1 5.2636 -5.7919 -1.4121 14 1 4.5110 -3.5132 -1.7612 15 6 4.2793 0.0571 1.8125 16 8 5.4837 0.0154 1.6767 17 6 3.6556 1.1146 2.6865 18 1 2.7240 1.5419 2.3157 19 6 4.5988 2.0392 3.4588 20 6 3.8083 0.9597 4.2009 21 17 4.7206 -0.4741 4.8034 22 17 2.4333 1.4980 5.2356 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6112 1.9794 -0.8462 28 1 1.7451 1.9321 0.9281 29 1 3.1269 1.4436 -0.0820 30 1 1.5949 -1.7148 1.3022 31 1 1.7633 -0.1513 2.1362 32 1 3.4550 -2.2223 -0.3971 33 1 5.0734 -1.6214 0.0366 34 1 5.4328 -6.1361 1.3009 35 1 4.2877 3.0748 3.5960 36 1 5.6704 1.8829 3.3344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920970002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:47 Heat of formation + Delta-G solvation = -45.448208 kcal Electronic energy + Delta-G solvation = -20227.348543 eV Core-core repulsion = 16991.520448 eV Total energy + Delta-G solvation = -3235.828095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29340 -38.51061 -37.74249 -37.09264 -36.24083 -35.32918 -34.18812 -30.44682 -28.11821 -27.09527 -26.00397 -23.38889 -23.28745 -21.44631 -19.77268 -19.05211 -18.81182 -17.32372 -16.99623 -16.45479 -15.83981 -15.65953 -15.44347 -14.62249 -14.54391 -14.42965 -14.05887 -13.92597 -13.47695 -13.32122 -13.12518 -12.95737 -12.75997 -12.68910 -12.52299 -12.31018 -12.25856 -11.96389 -11.90884 -11.81679 -11.70679 -11.66023 -11.50095 -11.00970 -10.81655 -10.70875 -9.39887 -8.31768 -6.36079 0.03537 1.01640 1.31608 1.35380 1.39964 1.43326 2.13985 2.30935 2.41157 3.02226 3.05092 3.26783 3.53181 3.87650 4.00985 4.06822 4.29234 4.47793 4.54038 4.67950 4.73184 4.77667 4.87429 4.91126 4.97548 5.07478 5.09150 5.29317 5.41292 5.47281 5.49976 5.63113 6.25557 6.62908 6.67144 7.20561 7.34481 8.85013 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.006801 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.978714 B = 4116.171112 C = 5217.148814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.108 3.892 5 N -0.587 5.587 6 C 0.228 3.772 7 C -0.529 4.529 8 H 0.032 0.968 9 C 0.013 3.987 10 N -0.944 5.944 11 Si 0.942 3.058 12 H -0.277 1.277 13 H -0.277 1.277 14 H -0.238 1.238 15 C 0.536 3.464 16 O -0.573 6.573 17 C -0.164 4.164 18 H 0.177 0.823 19 C -0.093 4.093 20 C 0.007 3.993 21 Cl -0.106 7.106 22 Cl -0.074 7.074 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.172 0.828 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 18.716 -0.095 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.203 4.203 4 C -0.015 4.015 5 N -0.316 5.316 6 C 0.106 3.894 7 C -0.568 4.568 8 H 0.051 0.949 9 C -0.185 4.185 10 N -0.585 5.585 11 Si 0.765 3.235 12 H -0.202 1.202 13 H -0.202 1.202 14 H -0.161 1.161 15 C 0.323 3.677 16 O -0.453 6.453 17 C -0.185 4.185 18 H 0.194 0.806 19 C -0.130 4.130 20 C -0.045 4.045 21 Cl -0.079 7.079 22 Cl -0.047 7.047 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.189 0.811 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.405 18.411 -0.040 20.674 hybrid contribution 0.546 -1.195 -0.184 1.327 sum -8.858 17.216 -0.224 19.362 Atomic orbital electron populations 1.21732 0.92405 1.02268 1.03140 1.21525 0.97515 0.96895 0.97287 1.21943 1.00082 0.95163 1.03149 1.21888 0.78441 1.01721 0.99422 1.47772 1.07407 1.26000 1.50384 1.19295 0.94002 0.84343 0.91770 1.21524 1.40755 0.97432 0.97048 0.94934 1.25782 0.95073 0.95008 1.02658 1.70050 1.45830 1.04585 1.38015 0.85805 0.79511 0.78246 0.79944 1.20246 1.20206 1.16147 1.19660 0.86230 0.81810 0.79993 1.90651 1.16085 1.74328 1.64211 1.23553 1.05338 1.00351 0.89262 0.80596 1.24128 0.99720 0.96880 0.92297 1.26624 0.93835 0.94207 0.89806 1.98821 1.75008 1.44266 1.89828 1.98739 1.46356 1.89057 1.70569 0.91127 0.91070 0.92878 0.92223 0.90708 0.90835 0.94666 0.91378 0.89099 0.93550 0.96097 0.92436 0.81080 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.19 71.98 0.66 -1.68 16 2 C -0.11 -2.58 3.11 -10.79 -0.03 -2.62 16 3 C -0.15 -2.80 7.83 71.98 0.56 -2.24 16 4 C 0.11 3.22 4.86 86.38 0.42 3.64 16 5 N -0.59 -23.20 2.26 -826.16 -1.87 -25.07 16 6 C 0.23 10.98 4.29 85.64 0.37 11.35 16 7 C -0.53 -30.96 9.94 25.60 0.25 -30.70 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 9 C 0.01 0.75 5.47 84.65 0.46 1.21 16 10 N -0.94 -60.11 13.96 21.44 0.30 -59.81 16 11 Si 0.94 44.62 27.47 68.60 1.88 46.51 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 14 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 15 C 0.54 20.62 5.26 87.66 0.46 21.08 16 16 O -0.57 -27.03 15.82 -3.02 -0.05 -27.08 16 17 C -0.16 -4.34 4.23 -11.54 -0.05 -4.39 16 18 H 0.18 3.43 4.39 -2.39 -0.01 3.42 16 19 C -0.09 -2.02 9.73 30.59 0.30 -1.72 16 20 C 0.01 0.20 3.61 30.59 0.11 0.31 16 21 Cl -0.11 -3.93 28.31 -2.72 -0.08 -4.01 16 22 Cl -0.07 -1.63 29.29 -2.72 -0.08 -1.71 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.06 1.58 8.02 -2.39 -0.02 1.56 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.09 6.26 -2.39 -0.01 1.07 16 29 H 0.03 0.84 6.96 -2.39 -0.02 0.82 16 30 H 0.07 2.26 8.12 -2.38 -0.02 2.24 16 31 H 0.09 2.30 6.14 -2.39 -0.01 2.28 16 32 H 0.05 2.08 7.01 -2.39 -0.02 2.06 16 33 H 0.02 1.08 6.78 -2.38 -0.02 1.07 16 34 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.12 3.04 7.68 -2.39 -0.02 3.02 16 Total: -1.00 -74.61 323.81 4.66 -69.95 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.03 Total: 6.97 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 3.52 Total: -5.76 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -1.57 Total: -84.88 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Atomic # 17 Polarization: -5.56 SS G_CDS: -0.16 Total: -5.72 kcal Total: -74.61 4.66 -69.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920970002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.506 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds