Wall clock time and date at job start Tue Mar 31 2020 07:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99985 * 2 1 4 4 H 1.48502 * 109.46785 * 269.99368 * 3 2 1 5 5 H 1.48497 * 109.47551 * 29.99543 * 3 2 1 6 6 H 1.48502 * 109.46943 * 149.99994 * 3 2 1 7 7 C 1.37880 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00174 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46986 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47115 * 179.97438 * 10 9 7 12 12 N 1.31133 * 126.54979 * 90.00700 * 11 10 9 13 13 C 1.34495 * 105.61732 * 180.02562 * 12 11 10 14 14 C 1.50696 * 126.29049 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47040 * 89.99765 * 14 13 12 16 16 C 1.38606 * 120.42133 * 100.02105 * 15 14 13 17 17 C 1.38667 * 118.43634 * 179.97438 * 16 15 14 18 18 C 1.38187 * 119.19469 * 0.02562 * 17 16 15 19 19 N 1.31884 * 120.77685 * 359.97438 * 18 17 16 20 20 C 1.31969 * 121.70563 * 0.02562 * 19 18 17 21 21 Cl 1.73607 * 119.63069 * 179.97438 * 20 19 18 22 22 N 1.29952 * 107.42223 * 0.23935 * 13 12 11 23 23 O 1.21306 * 110.24761 * 359.57945 * 22 13 12 24 24 H 0.96998 * 119.99605 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46912 * 59.99662 * 9 7 2 26 26 H 1.08995 * 109.47481 * 299.99783 * 9 7 2 27 27 H 1.09005 * 109.46281 * 60.00086 * 10 9 7 28 28 H 1.08995 * 109.47293 * 300.00461 * 10 9 7 29 29 H 1.09003 * 109.46874 * 330.00231 * 14 13 12 30 30 H 1.09000 * 109.47666 * 210.00061 * 14 13 12 31 31 H 1.08007 * 120.78524 * 0.02562 * 16 15 14 32 32 H 1.08004 * 120.40720 * 180.02562 * 17 16 15 33 33 H 1.08000 * 119.61217 * 180.25801 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6528 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9671 0.0012 12 7 1.1010 -5.6438 -1.0519 13 6 0.4725 -6.7312 -0.5709 14 6 -0.1619 -7.8284 -1.3862 15 6 0.8567 -8.9051 -1.6583 16 6 0.8700 -10.0661 -0.9012 17 6 1.8249 -11.0300 -1.1872 18 6 2.7261 -10.8034 -2.2100 19 7 2.6849 -9.6869 -2.9107 20 6 1.7905 -8.7476 -2.6669 21 17 1.7856 -7.2982 -3.6224 22 7 0.5078 -6.6591 0.7261 23 8 1.0936 -5.6558 1.0750 24 1 -0.4849 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8719 -3.6043 0.8906 28 1 2.8719 -3.6044 -0.8894 29 1 -0.5188 -7.4188 -2.3312 30 1 -1.0006 -8.2527 -0.8343 31 1 0.1530 -10.2168 -0.1076 32 1 1.8639 -11.9468 -0.6176 33 1 3.4700 -11.5514 -2.4413 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924238910.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:24 Heat of formation + Delta-G solvation = 61.870182 kcal Electronic energy + Delta-G solvation = -19967.082546 eV Core-core repulsion = 16634.800631 eV Total energy + Delta-G solvation = -3332.281915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.53052 -41.36271 -37.64132 -37.28564 -36.45984 -34.98574 -33.97656 -32.75876 -31.83101 -29.04991 -27.73185 -25.01048 -24.63978 -24.22667 -23.19771 -21.82806 -19.15609 -18.64562 -18.41904 -18.16859 -17.80373 -16.50874 -16.37749 -16.14249 -15.75680 -15.26565 -15.04452 -14.67582 -14.34883 -14.22864 -13.87626 -13.47304 -13.35020 -13.08765 -12.83158 -12.68921 -12.66681 -12.41960 -12.20211 -11.97533 -11.85575 -11.81806 -11.34033 -10.97270 -10.82569 -10.62746 -10.56223 -9.96871 -8.20139 -6.31874 -0.22756 0.05497 0.16889 0.85794 1.24652 1.45968 1.46705 1.57802 1.87674 2.42778 2.46362 2.81130 3.03343 3.15288 3.31575 3.61358 3.73212 3.92664 4.02634 4.17196 4.34644 4.41328 4.43966 4.54039 4.60801 4.78424 4.92745 4.97025 4.99555 5.06099 5.43988 5.47815 5.54564 5.78125 6.14089 6.63992 6.83627 7.14886 7.38119 8.92228 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.003378 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.241970 B = 8286.811833 C = 8732.070810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.036 3.964 10 C -0.014 4.014 11 C 0.205 3.795 12 N -0.495 5.495 13 C 0.173 3.827 14 C 0.016 3.984 15 C -0.133 4.133 16 C -0.051 4.051 17 C -0.157 4.157 18 C 0.110 3.890 19 N -0.511 5.511 20 C 0.160 3.840 21 Cl -0.030 7.030 22 N -0.401 5.401 23 O 0.058 5.942 24 H 0.264 0.736 25 H -0.006 1.006 26 H -0.001 1.001 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.173 0.827 32 H 0.186 0.814 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -23.664 -1.945 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.577 4.577 8 H 0.094 0.906 9 C -0.002 4.002 10 C -0.053 4.053 11 C -0.014 4.014 12 N -0.229 5.229 13 C -0.100 4.100 14 C -0.023 4.023 15 C -0.138 4.138 16 C -0.077 4.077 17 C -0.176 4.176 18 C -0.046 4.046 19 N -0.222 5.222 20 C -0.003 4.003 21 Cl -0.002 7.002 22 N -0.113 5.113 23 O 0.005 5.995 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.017 0.983 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.151 0.849 31 H 0.190 0.810 32 H 0.203 0.797 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.825 -23.967 -2.607 24.273 hybrid contribution -0.465 1.391 0.397 1.519 sum 2.360 -22.576 -2.210 22.806 Atomic orbital electron populations 1.70114 1.08011 1.27911 1.51377 1.25984 0.95681 1.03517 0.94561 0.85391 0.78811 0.78140 0.78375 1.20058 1.21198 1.18044 1.21566 0.94110 0.91088 1.50913 0.90554 1.18923 0.93904 0.91749 0.95650 1.20470 0.96788 0.82069 1.05961 1.29482 0.94762 0.97137 0.80026 1.72021 1.16309 1.05591 1.28974 1.25985 0.99159 0.96494 0.88408 1.18951 0.95586 0.87767 0.99956 1.20339 0.98340 0.97867 0.97238 1.21978 0.98220 0.90637 0.96869 1.22683 0.94681 1.01654 0.98563 1.23429 0.97924 0.92479 0.90799 1.67086 1.22477 1.02745 1.29885 1.21833 0.94142 0.90612 0.93711 1.98453 1.97481 1.32715 1.71526 1.74506 1.16579 1.04331 1.15898 1.85246 1.52459 1.25522 1.36322 0.92764 0.98764 0.98276 0.86895 0.87300 0.87101 0.84867 0.80970 0.79704 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.54 -28.89 9.11 25.60 0.23 -28.66 16 8 H 0.08 3.78 7.74 -2.92 -0.02 3.75 16 9 C 0.04 1.82 4.96 29.85 0.15 1.97 16 10 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16 11 C 0.21 7.82 7.77 88.38 0.69 8.50 16 12 N -0.50 -18.55 10.71 -303.18 -3.25 -21.80 16 13 C 0.17 5.60 7.28 138.46 1.01 6.61 16 14 C 0.02 0.38 5.45 29.10 0.16 0.54 16 15 C -0.13 -2.96 5.14 -19.75 -0.10 -3.06 16 16 C -0.05 -0.78 9.82 22.46 0.22 -0.56 16 17 C -0.16 -1.80 10.11 22.36 0.23 -1.57 16 18 C 0.11 1.71 11.18 84.67 0.95 2.66 16 19 N -0.51 -12.52 10.34 -186.69 -1.93 -14.45 16 20 C 0.16 4.23 7.26 84.70 0.62 4.85 16 21 Cl -0.03 -0.90 26.70 -2.72 -0.07 -0.98 16 22 N -0.40 -13.75 12.16 -60.29 -0.73 -14.49 16 23 O 0.06 2.16 11.31 74.88 0.85 3.00 16 24 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 28 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 29 H 0.11 2.61 7.37 -2.39 -0.02 2.60 16 30 H 0.13 2.28 8.03 -2.39 -0.02 2.26 16 31 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -70.36 312.87 3.09 -67.27 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.14 Total: 0.82 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.78 Total: -8.59 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -5.63 Total: -106.39 kcal Atomic # 8 Polarization: 2.16 SS G_CDS: 0.85 Total: 3.00 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.98 kcal Total: -70.36 3.09 -67.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924238910.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.139 kcal (2) G-P(sol) polarization free energy of solvation -70.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds