Wall clock time and date at job start Tue Mar 31 2020 07:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46973 * 2 1 4 4 C 1.50694 * 109.47166 * 240.00139 * 2 1 3 5 5 H 1.08003 * 120.00196 * 239.99894 * 4 2 1 6 6 C 1.37874 * 120.00287 * 59.99939 * 4 2 1 7 7 N 1.31516 * 120.00120 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00552 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46788 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47362 * 119.99630 * 8 6 4 11 11 H 1.48500 * 109.47447 * 240.00316 * 8 6 4 12 12 C 1.53002 * 109.47121 * 119.99858 * 2 1 3 13 13 S 1.80995 * 109.47150 * 300.00346 * 12 2 1 14 14 C 1.76200 * 99.99868 * 180.02562 * 13 12 2 15 15 N 1.28978 * 124.82328 * 359.97245 * 14 13 12 16 16 C 1.34787 * 117.86807 * 180.02562 * 15 14 13 17 17 C 1.41100 * 128.72431 * 180.02562 * 16 15 14 18 18 C 1.37205 * 120.43398 * 180.02562 * 17 16 15 19 19 C 1.38707 * 120.59771 * 359.97438 * 18 17 16 20 20 C 1.37739 * 119.97666 * 0.02562 * 19 18 17 21 21 C 1.39244 * 120.20450 * 359.97438 * 20 19 18 22 22 S 1.75804 * 124.82316 * 180.02562 * 14 13 12 23 23 H 1.09002 * 109.47746 * 300.00001 * 1 2 3 24 24 H 1.09005 * 109.47353 * 59.99770 * 1 2 3 25 25 H 1.08997 * 109.47501 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46471 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47030 * 299.99862 * 3 2 1 28 28 H 1.08997 * 109.46527 * 60.00113 * 3 2 1 29 29 H 0.96995 * 120.00271 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46946 * 179.97438 * 12 2 1 31 31 H 1.09002 * 109.46487 * 60.00382 * 12 2 1 32 32 H 1.08002 * 119.78693 * 359.97438 * 17 16 15 33 33 H 1.08007 * 119.70428 * 179.69769 * 18 17 16 34 34 H 1.08002 * 120.01620 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.89538 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0399 -0.7212 1.2493 13 16 1.4365 0.1320 2.7271 14 6 2.1532 -0.8802 3.9787 15 7 2.8867 -1.9176 3.7567 16 6 3.3636 -2.5917 4.8220 17 6 4.1785 -3.7434 4.8452 18 6 4.5681 -4.2951 6.0395 19 6 4.1684 -3.7306 7.2418 20 6 3.3728 -2.6062 7.2434 21 6 2.9679 -2.0329 6.0408 22 16 1.9690 -0.6203 5.7077 23 1 -0.3635 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 0.7089 1.1614 -3.4844 30 1 3.1300 -0.7216 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 4.4971 -4.1940 3.9169 33 1 5.1880 -5.1796 6.0435 34 1 4.4809 -4.1724 8.1765 35 1 3.0627 -2.1676 8.1802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118466470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:20 Heat of formation + Delta-G solvation = 41.763904 kcal Electronic energy + Delta-G solvation = -18060.473427 eV Core-core repulsion = 15275.656560 eV Total energy + Delta-G solvation = -2784.816867 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09582 -36.66969 -36.05917 -31.59010 -31.13239 -29.91920 -26.36819 -25.74055 -25.17292 -24.90579 -23.06564 -21.47178 -19.25319 -18.41257 -16.98371 -16.36308 -16.00337 -15.38385 -14.81430 -14.77141 -14.67699 -14.00596 -13.72342 -13.34842 -12.73043 -12.59731 -12.26096 -12.14628 -12.02264 -11.41910 -11.31515 -10.92935 -10.89663 -10.77759 -10.37501 -10.34802 -10.14586 -10.07242 -9.63705 -9.59867 -9.45309 -9.15650 -8.72996 -8.42008 -8.17022 -7.22061 -6.04332 -4.15244 0.35915 1.00721 1.04533 1.65998 1.85075 2.27711 2.79134 3.25681 3.34424 3.38766 3.63361 4.32540 4.37945 4.61366 4.81488 5.08672 5.22262 5.23198 5.40156 5.77048 5.96935 6.01261 6.06365 6.11343 6.25244 6.48725 6.58861 6.76117 6.85621 6.97352 6.99357 7.30566 7.53320 7.57315 7.67910 7.97820 8.10057 8.34106 8.84246 9.50447 10.97002 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.003893 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.343833 B = 7190.659966 C = 8083.946071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.078 3.922 3 C -0.136 4.136 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.072 4.072 13 S 0.002 5.998 14 C 0.104 3.896 15 N -0.478 5.478 16 C 0.102 3.898 17 C -0.072 4.072 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.070 4.070 21 C -0.182 4.182 22 S 0.071 5.929 23 H 0.016 0.984 24 H 0.088 0.912 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.669 -5.194 17.381 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.221 4.221 13 S 0.238 5.762 14 C -0.288 4.288 15 N -0.196 5.196 16 C -0.021 4.021 17 C -0.094 4.094 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.093 4.093 21 C -0.303 4.303 22 S 0.323 5.677 23 H 0.035 0.965 24 H 0.107 0.893 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.397 -3.396 17.308 17.800 hybrid contribution 1.630 -2.306 -0.938 2.976 sum 4.028 -5.702 16.370 17.796 Atomic orbital electron populations 1.21926 0.97287 0.99520 1.00673 1.18102 0.93008 0.92545 0.88772 1.21928 0.98782 0.98020 1.00674 1.21020 1.31646 1.12166 0.89534 0.92345 1.24880 0.94833 0.94923 0.98803 1.69813 1.36537 1.22661 1.23250 0.86500 0.78665 0.79716 0.82917 1.19781 1.20987 1.20980 1.24216 1.03658 1.01921 0.92340 1.86048 1.60312 1.33252 0.96554 1.29677 0.99946 0.99003 1.00134 1.66996 1.13781 1.07367 1.31476 1.19313 0.99518 0.97277 0.85961 1.20723 0.96316 0.93223 0.99102 1.20924 1.00087 1.00113 0.91711 1.21048 0.98368 0.95834 0.98419 1.20284 0.97943 0.95959 0.95069 1.23673 1.06427 1.01478 0.98689 1.84816 1.52490 1.27553 1.02831 0.96508 0.89323 0.95189 0.95192 0.89312 0.96513 0.92931 0.89835 0.89840 0.84821 0.84965 0.85030 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.01 37.15 0.30 -2.86 16 2 C 0.08 1.83 0.52 -155.66 -0.08 1.75 16 3 C -0.14 -3.15 8.01 37.16 0.30 -2.86 16 4 C -0.50 -13.15 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 8 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 C -0.07 -1.51 4.08 37.16 0.15 -1.36 16 13 S 0.00 0.04 19.35 -107.50 -2.08 -2.04 16 14 C 0.10 1.82 7.64 51.56 0.39 2.22 16 15 N -0.48 -8.75 9.83 -10.59 -0.10 -8.85 16 16 C 0.10 1.64 6.94 -84.90 -0.59 1.05 16 17 C -0.07 -0.93 10.10 -38.87 -0.39 -1.33 16 18 C -0.11 -1.07 9.99 -39.78 -0.40 -1.46 16 19 C -0.11 -1.07 10.05 -39.59 -0.40 -1.47 16 20 C -0.07 -0.77 10.06 -39.39 -0.40 -1.17 16 21 C -0.18 -2.61 6.52 -38.63 -0.25 -2.86 16 22 S 0.07 1.03 23.38 -107.50 -2.51 -1.48 16 23 H 0.02 0.34 6.91 -51.93 -0.36 -0.01 16 24 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 28 H 0.02 0.34 6.91 -51.93 -0.36 -0.02 16 29 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.08 1.79 8.14 -51.91 -0.42 1.37 16 31 H 0.08 1.79 8.14 -51.91 -0.42 1.37 16 32 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -27.62 314.66 -10.46 -38.09 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.27 Total: -0.86 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.73 Total: -22.09 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.41 Total: -31.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -4.59 Total: -3.52 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.62 -10.46 -38.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118466470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.850 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds