Wall clock time and date at job start Tue Mar 31 2020 07:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46973 * 2 1 4 4 C 1.50694 * 109.47166 * 240.00139 * 2 1 3 5 5 H 1.08003 * 120.00196 * 239.99894 * 4 2 1 6 6 C 1.37874 * 120.00287 * 59.99939 * 4 2 1 7 7 N 1.31516 * 120.00120 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00552 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46788 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47362 * 119.99630 * 8 6 4 11 11 H 1.48500 * 109.47447 * 240.00316 * 8 6 4 12 12 C 1.53002 * 109.47121 * 119.99858 * 2 1 3 13 13 S 1.80995 * 109.47150 * 300.00346 * 12 2 1 14 14 C 1.76200 * 99.99868 * 180.02562 * 13 12 2 15 15 N 1.28978 * 124.82328 * 359.97245 * 14 13 12 16 16 C 1.34787 * 117.86807 * 180.02562 * 15 14 13 17 17 C 1.41100 * 128.72431 * 180.02562 * 16 15 14 18 18 C 1.37205 * 120.43398 * 180.02562 * 17 16 15 19 19 C 1.38707 * 120.59771 * 359.97438 * 18 17 16 20 20 C 1.37739 * 119.97666 * 0.02562 * 19 18 17 21 21 C 1.39244 * 120.20450 * 359.97438 * 20 19 18 22 22 S 1.75804 * 124.82316 * 180.02562 * 14 13 12 23 23 H 1.09002 * 109.47746 * 300.00001 * 1 2 3 24 24 H 1.09005 * 109.47353 * 59.99770 * 1 2 3 25 25 H 1.08997 * 109.47501 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46471 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47030 * 299.99862 * 3 2 1 28 28 H 1.08997 * 109.46527 * 60.00113 * 3 2 1 29 29 H 0.96995 * 120.00271 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46946 * 179.97438 * 12 2 1 31 31 H 1.09002 * 109.46487 * 60.00382 * 12 2 1 32 32 H 1.08002 * 119.78693 * 359.97438 * 17 16 15 33 33 H 1.08007 * 119.70428 * 179.69769 * 18 17 16 34 34 H 1.08002 * 120.01620 * 180.02562 * 19 18 17 35 35 H 1.07995 * 119.89538 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1856 -4.8161 12 6 2.0399 -0.7212 1.2493 13 16 1.4365 0.1320 2.7271 14 6 2.1532 -0.8802 3.9787 15 7 2.8867 -1.9176 3.7567 16 6 3.3636 -2.5917 4.8220 17 6 4.1785 -3.7434 4.8452 18 6 4.5681 -4.2951 6.0395 19 6 4.1684 -3.7306 7.2418 20 6 3.3728 -2.6062 7.2434 21 6 2.9679 -2.0329 6.0408 22 16 1.9690 -0.6203 5.7077 23 1 -0.3635 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6765 1.9563 0.8900 29 1 0.7089 1.1614 -3.4844 30 1 3.1300 -0.7216 1.2490 31 1 1.6766 -1.7489 1.2492 32 1 4.4971 -4.1940 3.9169 33 1 5.1880 -5.1796 6.0435 34 1 4.4809 -4.1724 8.1765 35 1 3.0627 -2.1676 8.1802 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118466470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:19 Heat of formation + Delta-G solvation = 28.442093 kcal Electronic energy + Delta-G solvation = -18061.051104 eV Core-core repulsion = 15275.656560 eV Total energy + Delta-G solvation = -2785.394544 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 293.060 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14333 -37.94788 -37.69759 -33.57499 -32.03747 -30.94644 -28.08416 -27.63410 -27.19117 -26.06114 -24.01702 -22.51304 -21.02893 -19.57769 -18.21482 -17.96020 -17.37013 -16.68521 -16.37766 -16.03973 -15.89495 -15.29988 -15.03916 -14.91846 -14.47559 -14.01160 -13.50503 -13.42902 -13.24491 -13.04941 -12.84708 -12.69478 -12.60062 -12.27949 -12.15014 -11.91004 -11.83146 -11.51498 -11.36238 -11.16976 -10.78519 -10.62478 -10.45083 -10.22621 -9.18311 -8.57961 -8.04153 -6.21232 -0.73796 -0.22158 0.13957 0.49490 0.62159 1.21223 1.22317 1.40988 1.45024 1.54511 2.44896 2.68034 3.19188 3.26515 3.69328 4.06801 4.20973 4.27953 4.29411 4.31938 4.57254 4.68027 4.88534 4.92605 4.99042 5.09338 5.11657 5.14164 5.24202 5.39751 5.40151 5.60581 5.64589 5.76601 6.05867 6.15101 6.37760 6.40638 6.82035 7.46493 8.95418 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.003893 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.343833 B = 7190.659966 C = 8083.946071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.071 3.929 3 C -0.125 4.125 4 C -0.524 4.524 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.280 1.280 12 C -0.061 4.061 13 S 0.007 5.993 14 C 0.070 3.930 15 N -0.500 5.500 16 C 0.057 3.943 17 C -0.090 4.090 18 C -0.095 4.095 19 C -0.092 4.092 20 C -0.077 4.077 21 C -0.194 4.194 22 S 0.106 5.894 23 H 0.035 0.965 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.261 0.739 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.132 0.868 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.704 -6.658 20.272 21.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 C -0.183 4.183 4 C -0.564 4.564 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.206 1.206 12 C -0.211 4.211 13 S 0.242 5.758 14 C -0.321 4.321 15 N -0.219 5.219 16 C -0.065 4.065 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.100 4.100 21 C -0.314 4.314 22 S 0.358 5.642 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.150 0.850 33 H 0.188 0.812 34 H 0.195 0.805 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.438 -4.870 20.205 21.066 hybrid contribution 1.429 -2.021 -1.569 2.930 sum 4.867 -6.890 18.636 20.457 Atomic orbital electron populations 1.21768 0.97090 0.99055 1.00416 1.18088 0.93154 0.92681 0.89212 1.21770 0.98317 0.97826 1.00418 1.21278 1.31827 1.12191 0.91097 0.93471 1.25500 0.95064 0.95575 1.01069 1.69924 1.36981 1.23350 1.23715 0.85645 0.78154 0.78689 0.79959 1.19853 1.20615 1.20608 1.23751 1.02644 1.01235 0.93460 1.85662 1.61227 1.33564 0.95361 1.29427 1.01532 0.99700 1.01468 1.66927 1.13613 1.07657 1.33710 1.19663 1.01814 0.98991 0.86061 1.21007 0.96557 0.92871 1.00724 1.21421 0.98957 1.00499 0.90667 1.21653 0.95626 0.94144 0.99943 1.20773 0.97918 0.96473 0.94846 1.23992 1.06561 1.01400 0.99452 1.84496 1.52266 1.27728 0.99735 0.94654 0.91546 0.95690 0.95693 0.91535 0.94660 0.92889 0.91174 0.91178 0.84982 0.81232 0.80499 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 8.01 71.98 0.58 -5.38 16 2 C 0.07 3.43 0.52 -52.93 -0.03 3.40 16 3 C -0.13 -5.96 8.01 71.99 0.58 -5.38 16 4 C -0.52 -28.23 8.01 25.60 0.21 -28.03 16 5 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 6 C 0.03 1.49 5.15 84.65 0.44 1.92 16 7 N -0.90 -49.12 9.35 21.45 0.20 -48.92 16 8 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 C -0.06 -2.67 4.08 71.98 0.29 -2.38 16 13 S 0.01 0.26 19.35 -56.49 -1.09 -0.84 16 14 C 0.07 2.50 7.64 130.66 1.00 3.50 16 15 N -0.50 -18.80 9.83 -187.43 -1.84 -20.64 16 16 C 0.06 1.79 6.94 39.77 0.28 2.06 16 17 C -0.09 -2.21 10.10 22.73 0.23 -1.98 16 18 C -0.09 -1.50 9.99 22.14 0.22 -1.28 16 19 C -0.09 -1.23 10.05 22.26 0.22 -1.01 16 20 C -0.08 -1.41 10.06 22.39 0.23 -1.19 16 21 C -0.19 -5.22 6.52 22.89 0.15 -5.07 16 22 S 0.11 2.98 23.38 -56.49 -1.32 1.66 16 23 H 0.03 1.50 6.91 -2.39 -0.02 1.48 16 24 H 0.07 3.46 6.07 -2.38 -0.01 3.44 16 25 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 28 H 0.03 1.50 6.91 -2.39 -0.02 1.48 16 29 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 30 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -62.00 314.66 3.45 -58.55 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.09 Total: 6.01 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 4.38 Total: -40.80 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -1.64 Total: -69.56 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.41 Total: 0.82 kcal Total: -62.00 3.45 -58.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118466470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.993 kcal (2) G-P(sol) polarization free energy of solvation -61.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds