Wall clock time and date at job start Tue Mar 31 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35226 * 126.45091 * 2 1 4 4 C 1.35837 * 107.19919 * 180.25808 * 3 2 1 5 5 N 1.32861 * 108.39822 * 359.97438 * 4 3 2 6 6 C 1.31891 * 109.08041 * 0.02562 * 5 4 3 7 7 C 1.46555 * 125.89020 * 180.02562 * 6 5 4 8 8 O 1.21328 * 120.00022 * 179.97438 * 7 6 5 9 9 C 1.50693 * 119.99685 * 359.96982 * 7 6 5 10 10 H 1.09002 * 109.47440 * 35.00431 * 9 7 6 11 11 C 1.47197 * 109.47430 * 275.00235 * 9 7 6 12 12 N 5.23601 * 113.85781 * 211.02015 * 2 1 3 13 13 C 1.50705 * 109.46722 * 155.00134 * 9 7 6 14 14 O 1.20754 * 119.99913 * 30.00180 * 13 9 7 15 15 C 1.50699 * 119.99845 * 209.99574 * 13 9 7 16 16 S 1.81000 * 109.47007 * 180.02562 * 15 13 9 17 17 C 1.76203 * 99.99938 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00283 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00096 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99699 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47354 * 89.99718 * 21 19 17 23 23 H 1.48503 * 109.47149 * 209.99900 * 21 19 17 24 24 H 1.48497 * 109.47149 * 329.99220 * 21 19 17 25 25 H 1.09006 * 109.47470 * 269.69247 * 1 2 3 26 26 H 1.09000 * 109.47347 * 29.69049 * 1 2 3 27 27 H 1.08997 * 109.47428 * 149.69328 * 1 2 3 28 28 H 1.08001 * 126.39656 * 0.23513 * 3 2 1 29 29 H 1.08004 * 125.80204 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47483 * 300.00230 * 15 13 9 31 31 H 1.09003 * 109.46770 * 60.00716 * 15 13 9 32 32 H 0.96996 * 119.99729 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2684 1.0877 0.0000 4 6 3.5508 0.6398 -0.0058 5 7 3.5310 -0.6886 -0.0088 6 6 2.2783 -1.1012 -0.0055 7 6 1.8336 -2.4976 -0.0067 8 8 0.6483 -2.7568 -0.0029 9 6 2.8485 -3.6115 -0.0126 10 1 3.7176 -3.3143 0.5743 11 6 3.2634 -3.8899 -1.3972 12 7 3.5828 -4.1038 -2.4678 13 6 2.2371 -4.8513 0.5877 14 8 1.0503 -5.0492 0.4858 15 6 3.1070 -5.8440 1.3149 16 16 2.0873 -7.2138 1.9148 17 6 3.3228 -8.1932 2.7017 18 1 4.3520 -7.8661 2.7020 19 6 2.9733 -9.3852 3.3210 20 7 1.7187 -9.7836 3.3210 21 14 4.2829 -10.4230 4.1558 22 1 4.4104 -10.0103 5.5766 23 1 3.8964 -11.8553 4.0892 24 1 5.5831 -10.2287 3.4653 25 1 -0.3634 -0.0055 1.0277 26 1 -0.3634 0.8927 -0.5090 27 1 -0.3634 -0.8872 -0.5186 28 1 1.9499 2.1197 0.0036 29 1 4.4361 1.2585 -0.0078 30 1 3.8670 -6.2281 0.6345 31 1 3.5902 -5.3532 2.1597 32 1 1.4744 -10.6164 3.7542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122631825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:18 Heat of formation + Delta-G solvation = 33.703848 kcal Electronic energy + Delta-G solvation = -19807.865873 eV Core-core repulsion = 16476.406281 eV Total energy + Delta-G solvation = -3331.459592 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.66915 -40.41266 -38.32715 -36.61684 -34.60527 -32.47173 -32.39679 -30.36357 -28.95505 -27.60614 -25.54283 -24.14320 -21.89595 -20.68868 -20.33389 -18.24258 -17.78358 -17.50428 -16.44340 -16.23171 -16.17072 -15.09502 -14.83248 -14.60724 -14.55594 -14.35115 -14.00146 -13.90143 -13.66468 -13.31506 -13.14376 -12.99833 -12.95944 -12.52718 -12.28235 -11.99654 -11.09517 -11.06014 -10.79905 -10.70272 -10.46695 -10.21483 -9.92263 -9.40019 -9.10026 -8.97065 -8.35083 -6.59040 -6.25810 -3.98237 0.56101 1.81841 1.91148 2.08744 2.52567 2.54322 2.87966 3.05796 3.21529 3.26955 3.30319 3.43922 3.79440 4.08498 4.13167 4.16211 4.33611 4.46649 4.75386 4.88304 4.89179 5.05422 5.10233 5.15329 5.22224 5.60383 5.74568 5.77232 6.07701 6.17771 6.42434 6.80569 7.25214 7.48325 7.56582 7.57480 8.32028 9.20026 10.81816 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.003359 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.927528 B = 8334.286350 C = 8474.708003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.414 5.414 3 C -0.021 4.021 4 C -0.024 4.024 5 N -0.424 5.424 6 C 0.102 3.898 7 C 0.454 3.546 8 O -0.397 6.397 9 C -0.061 4.061 10 H 0.172 0.828 11 C 0.227 3.773 12 N -0.390 5.390 13 C 0.377 3.623 14 O -0.380 6.380 15 C -0.178 4.178 16 S -0.074 6.074 17 C -0.532 4.532 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.920 3.080 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.271 1.271 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.186 0.814 29 H 0.182 0.818 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 23.401 -4.621 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.094 5.094 3 C -0.161 4.161 4 C -0.179 4.179 5 N -0.147 5.147 6 C -0.152 4.152 7 C 0.324 3.676 8 O -0.263 6.263 9 C -0.086 4.086 10 H 0.189 0.811 11 C -0.091 4.091 12 N -0.066 5.066 13 C 0.243 3.757 14 O -0.246 6.246 15 C -0.326 4.326 16 S 0.154 5.846 17 C -0.681 4.681 18 H 0.094 0.906 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.196 1.196 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.124 0.876 28 H 0.203 0.797 29 H 0.199 0.801 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.543 21.860 -6.333 22.766 hybrid contribution 1.592 0.474 1.147 2.019 sum 1.049 22.334 -5.185 22.952 Atomic orbital electron populations 1.22453 0.74825 1.05915 1.05042 1.45235 1.08598 1.06161 1.49409 1.23110 0.91646 0.93100 1.08201 1.22555 0.96619 0.90805 1.07905 1.70234 1.17479 1.12675 1.14294 1.23040 0.86394 0.90382 1.15356 1.20252 0.88925 0.84994 0.73411 1.90716 1.17858 1.84677 1.33057 1.19598 1.02750 0.96984 0.89268 0.81087 1.27218 0.94284 0.94716 0.92919 1.81291 1.07874 1.06728 1.10725 1.23579 0.89859 0.84348 0.77881 1.90529 1.16659 1.71354 1.46014 1.23983 1.03939 1.01409 1.03237 1.85339 1.11963 1.16955 1.70364 1.22811 0.95339 1.08847 1.41061 0.90578 1.25008 0.96169 0.96733 0.95667 1.70014 1.16374 1.22321 1.41545 0.86142 0.80786 0.78927 0.79529 1.20200 1.20773 1.19578 0.89307 0.89084 0.87572 0.79700 0.80098 0.87946 0.87590 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.62 59.84 0.64 1.02 16 2 N -0.41 -3.73 3.16 -122.11 -0.39 -4.12 16 3 C -0.02 -0.14 11.53 -16.92 -0.20 -0.34 16 4 C -0.02 -0.20 11.85 -17.97 -0.21 -0.41 16 5 N -0.42 -4.82 10.97 -11.39 -0.12 -4.94 16 6 C 0.10 1.19 7.70 -154.45 -1.19 0.00 16 7 C 0.45 6.04 6.18 -30.96 -0.19 5.85 16 8 O -0.40 -6.11 13.08 -17.89 -0.23 -6.34 16 9 C -0.06 -0.80 2.62 -95.71 -0.25 -1.05 16 10 H 0.17 1.65 8.01 -51.93 -0.42 1.23 16 11 C 0.23 3.34 14.61 -20.71 -0.30 3.03 16 12 N -0.39 -6.40 18.55 42.21 0.78 -5.62 16 13 C 0.38 6.41 6.18 -29.03 -0.18 6.23 16 14 O -0.38 -7.82 14.30 -17.40 -0.25 -8.07 16 15 C -0.18 -3.30 6.08 36.01 0.22 -3.08 16 16 S -0.07 -1.92 20.58 -107.50 -2.21 -4.13 16 17 C -0.53 -14.73 9.50 30.94 0.29 -14.43 16 18 H 0.08 1.98 7.80 -52.49 -0.41 1.57 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 21 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.11 0.88 6.36 -51.93 -0.33 0.55 16 28 H 0.19 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 31 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -36.09 316.26 -6.24 -42.33 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: -2.83 Total: -3.76 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.47 Total: -1.21 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 1.01 Total: -39.62 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.48 Total: -14.41 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -2.21 Total: -4.13 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.09 -6.24 -42.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122631825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.038 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds