Wall clock time and date at job start Tue Mar 31 2020 06:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35226 * 126.45091 * 2 1 4 4 C 1.35837 * 107.19919 * 180.25808 * 3 2 1 5 5 N 1.32861 * 108.39822 * 359.97438 * 4 3 2 6 6 C 1.31891 * 109.08041 * 0.02562 * 5 4 3 7 7 C 1.46555 * 125.89020 * 180.02562 * 6 5 4 8 8 O 1.21328 * 120.00022 * 179.97438 * 7 6 5 9 9 C 1.50693 * 119.99685 * 359.96982 * 7 6 5 10 10 H 1.09002 * 109.47440 * 35.00431 * 9 7 6 11 11 C 1.47197 * 109.47430 * 275.00235 * 9 7 6 12 12 N 5.23601 * 113.85781 * 211.02015 * 2 1 3 13 13 C 1.50705 * 109.46722 * 155.00134 * 9 7 6 14 14 O 1.20754 * 119.99913 * 30.00180 * 13 9 7 15 15 C 1.50699 * 119.99845 * 209.99574 * 13 9 7 16 16 S 1.81000 * 109.47007 * 180.02562 * 15 13 9 17 17 C 1.76203 * 99.99938 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00283 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00096 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99699 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00115 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47354 * 89.99718 * 21 19 17 23 23 H 1.48503 * 109.47149 * 209.99900 * 21 19 17 24 24 H 1.48497 * 109.47149 * 329.99220 * 21 19 17 25 25 H 1.09006 * 109.47470 * 269.69247 * 1 2 3 26 26 H 1.09000 * 109.47347 * 29.69049 * 1 2 3 27 27 H 1.08997 * 109.47428 * 149.69328 * 1 2 3 28 28 H 1.08001 * 126.39656 * 0.23513 * 3 2 1 29 29 H 1.08004 * 125.80204 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47483 * 300.00230 * 15 13 9 31 31 H 1.09003 * 109.46770 * 60.00716 * 15 13 9 32 32 H 0.96996 * 119.99729 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2684 1.0877 0.0000 4 6 3.5508 0.6398 -0.0058 5 7 3.5310 -0.6886 -0.0088 6 6 2.2783 -1.1012 -0.0055 7 6 1.8336 -2.4976 -0.0067 8 8 0.6483 -2.7568 -0.0029 9 6 2.8485 -3.6115 -0.0126 10 1 3.7176 -3.3143 0.5743 11 6 3.2634 -3.8899 -1.3972 12 7 3.5828 -4.1038 -2.4678 13 6 2.2371 -4.8513 0.5877 14 8 1.0503 -5.0492 0.4858 15 6 3.1070 -5.8440 1.3149 16 16 2.0873 -7.2138 1.9148 17 6 3.3228 -8.1932 2.7017 18 1 4.3520 -7.8661 2.7020 19 6 2.9733 -9.3852 3.3210 20 7 1.7187 -9.7836 3.3210 21 14 4.2829 -10.4230 4.1558 22 1 4.4104 -10.0103 5.5766 23 1 3.8964 -11.8553 4.0892 24 1 5.5831 -10.2287 3.4653 25 1 -0.3634 -0.0055 1.0277 26 1 -0.3634 0.8927 -0.5090 27 1 -0.3634 -0.8872 -0.5186 28 1 1.9499 2.1197 0.0036 29 1 4.4361 1.2585 -0.0078 30 1 3.8670 -6.2281 0.6345 31 1 3.5902 -5.3532 2.1597 32 1 1.4744 -10.6164 3.7542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122631825.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:18 Heat of formation + Delta-G solvation = 11.004239 kcal Electronic energy + Delta-G solvation = -19808.850202 eV Core-core repulsion = 16476.406281 eV Total energy + Delta-G solvation = -3332.443921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.35881 -41.60720 -39.57667 -37.86876 -35.26126 -34.57368 -33.59078 -31.34301 -30.15820 -28.19144 -27.66005 -25.02157 -22.55188 -22.04466 -21.22221 -19.80470 -19.10771 -18.53030 -17.56757 -17.22595 -16.98978 -16.86269 -16.18999 -16.07681 -15.84627 -15.32670 -15.19346 -14.98816 -14.57261 -14.42864 -14.21518 -14.12266 -13.86587 -13.70168 -13.55877 -13.39385 -13.13805 -12.87675 -12.61181 -11.76014 -11.67061 -11.25517 -11.12827 -10.88411 -10.79271 -10.30058 -9.60106 -8.68360 -8.34198 -6.12545 -0.31623 0.50227 1.07650 1.13195 1.35732 1.41239 1.44345 1.52050 1.58267 1.65756 2.09438 2.27093 2.33249 2.68728 2.83152 3.01022 3.23358 3.38276 3.78630 3.87746 3.92934 4.11678 4.30392 4.31286 4.42296 4.53926 4.57612 4.66486 5.14553 5.44806 5.60004 5.73475 5.95809 6.06658 6.20258 6.21844 6.80485 7.08142 8.75059 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.003359 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.927528 B = 8334.286350 C = 8474.708003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.415 5.415 3 C 0.008 3.992 4 C -0.040 4.040 5 N -0.441 5.441 6 C 0.062 3.938 7 C 0.456 3.544 8 O -0.431 6.431 9 C -0.047 4.047 10 H 0.211 0.789 11 C 0.244 3.756 12 N -0.420 5.420 13 C 0.386 3.614 14 O -0.420 6.420 15 C -0.158 4.158 16 S -0.165 6.165 17 C -0.541 4.541 18 H 0.088 0.912 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.258 1.258 25 H 0.095 0.905 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.233 0.767 29 H 0.209 0.791 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 26.093 -4.218 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.095 5.095 3 C -0.133 4.133 4 C -0.195 4.195 5 N -0.165 5.165 6 C -0.189 4.189 7 C 0.329 3.671 8 O -0.299 6.299 9 C -0.072 4.072 10 H 0.228 0.772 11 C -0.075 4.075 12 N -0.096 5.096 13 C 0.255 3.745 14 O -0.288 6.288 15 C -0.306 4.306 16 S 0.064 5.936 17 C -0.689 4.689 18 H 0.106 0.894 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.182 1.182 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.101 0.899 28 H 0.249 0.751 29 H 0.226 0.774 30 H 0.138 0.862 31 H 0.155 0.845 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.504 24.547 -5.938 25.300 hybrid contribution 0.973 -0.130 0.973 1.382 sum 2.477 24.417 -4.965 25.040 Atomic orbital electron populations 1.22605 0.73674 1.06585 1.05680 1.45474 1.09491 1.06097 1.48465 1.23927 0.90809 0.94274 1.04292 1.23207 0.98513 0.90007 1.07818 1.70167 1.17466 1.14541 1.14291 1.22547 0.87185 0.90064 1.19144 1.20288 0.88264 0.85976 0.72602 1.90714 1.18886 1.85209 1.35102 1.19551 1.03970 0.95059 0.88582 0.77220 1.27340 0.93340 0.93838 0.92933 1.81303 1.09186 1.07551 1.11600 1.23701 0.89001 0.84934 0.76889 1.90534 1.18372 1.72376 1.47547 1.23969 1.03068 0.98909 1.04687 1.85508 1.15745 1.21070 1.71311 1.23182 0.95753 1.09182 1.40800 0.89421 1.26112 0.98499 0.98189 0.96322 1.70180 1.18814 1.22959 1.42847 0.84967 0.77899 0.76661 0.78575 1.19149 1.20639 1.18175 0.88652 0.85434 0.89920 0.75108 0.77380 0.86200 0.84467 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 10.62 127.77 1.36 1.98 16 2 N -0.42 -6.51 3.16 -540.24 -1.71 -8.21 16 3 C 0.01 0.07 11.53 83.61 0.96 1.04 16 4 C -0.04 -0.52 11.85 83.98 1.00 0.47 16 5 N -0.44 -9.05 10.97 -189.94 -2.08 -11.13 16 6 C 0.06 1.35 7.70 135.88 1.05 2.40 16 7 C 0.46 12.06 6.18 27.85 0.17 12.23 16 8 O -0.43 -13.69 13.08 19.20 0.25 -13.44 16 9 C -0.05 -1.19 2.62 -14.09 -0.04 -1.23 16 10 H 0.21 3.56 8.01 -2.39 -0.02 3.54 16 11 C 0.24 7.01 14.61 89.42 1.31 8.31 16 12 N -0.42 -13.65 18.55 20.02 0.37 -13.28 16 13 C 0.39 13.12 6.18 29.10 0.18 13.30 16 14 O -0.42 -17.93 14.30 20.95 0.30 -17.63 16 15 C -0.16 -5.76 6.08 71.24 0.43 -5.32 16 16 S -0.16 -8.78 20.58 -56.49 -1.16 -9.94 16 17 C -0.54 -30.05 9.50 67.95 0.65 -29.40 16 18 H 0.09 4.48 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.76 5.49 84.86 0.47 1.22 16 20 N -0.91 -55.26 13.22 21.65 0.29 -54.98 16 21 Si 1.00 43.01 29.55 68.60 2.03 45.03 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 25 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 1.37 6.36 -2.39 -0.02 1.36 16 28 H 0.23 -0.15 8.06 -2.91 -0.02 -0.17 16 29 H 0.21 1.35 8.06 -2.91 -0.02 1.32 16 30 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 31 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -82.35 316.26 6.98 -75.37 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 1.17 Total: 3.21 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 7.53 Total: 5.00 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -3.13 Total: -87.60 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: 0.55 Total: -31.07 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -82.35 6.98 -75.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122631825.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.370 kcal (2) G-P(sol) polarization free energy of solvation -82.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds