Wall clock time and date at job start Tue Mar 31 2020 06:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00006 * 2 1 4 4 H 1.48496 * 109.47217 * 269.99452 * 3 2 1 5 5 H 1.48504 * 109.47417 * 29.99650 * 3 2 1 6 6 H 1.48504 * 109.47294 * 149.99429 * 3 2 1 7 7 C 1.37882 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99944 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46911 * 299.99690 * 9 7 2 11 11 O 1.45202 * 109.46899 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00248 * 150.00272 * 11 9 7 13 13 O 1.20825 * 119.99842 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00042 * 179.97438 * 12 11 9 15 15 C 1.50701 * 109.46807 * 179.97438 * 14 12 11 16 16 C 1.33644 * 122.74543 * 125.00456 * 15 14 12 17 17 S 1.76193 * 107.92165 * 179.97438 * 16 15 14 18 18 C 1.70971 * 90.28504 * 0.02562 * 17 16 15 19 19 N 1.29025 * 110.16475 * 359.73431 * 18 17 16 20 20 C 1.50696 * 109.47001 * 60.00016 * 9 7 2 21 21 C 1.34512 * 125.79090 * 265.02000 * 20 9 7 22 22 C 1.41379 * 106.84332 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84086 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.79037 * 85.02596 * 20 9 7 25 25 H 0.97001 * 120.00003 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47214 * 300.00293 * 14 12 11 27 27 H 1.09001 * 109.46545 * 60.00049 * 14 12 11 28 28 H 1.08000 * 126.03835 * 359.97438 * 16 15 14 29 29 H 1.07999 * 124.91575 * 179.97438 * 18 17 16 30 30 H 1.08007 * 126.58045 * 0.02562 * 21 20 9 31 31 H 1.07996 * 126.58354 * 180.02562 * 22 21 20 32 32 H 1.07998 * 125.79383 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8029 -4.7389 0.5999 13 8 0.7080 -4.8086 1.1061 14 6 2.7287 -5.9272 0.6400 15 6 2.0548 -7.0647 1.3632 16 6 1.9037 -8.2772 0.8217 17 16 1.0736 -9.2957 1.9956 18 6 1.0116 -7.9898 3.0975 19 7 1.5708 -6.9470 2.5832 20 6 0.3851 -2.5792 -1.2302 21 6 -0.9134 -2.2354 -1.3023 22 6 -1.3257 -2.4693 -2.6342 23 6 -0.2548 -2.9425 -3.2964 24 8 0.7789 -3.0061 -2.4412 25 1 -0.4850 0.8401 -0.0004 26 1 2.9694 -6.2348 -0.3775 27 1 3.6452 -5.6561 1.1641 28 1 2.2323 -8.5793 -0.1617 29 1 0.5717 -8.0328 4.0829 30 1 -1.5238 -1.8539 -0.4971 31 1 -2.3114 -2.3003 -3.0419 32 1 -0.2300 -3.2232 -4.3389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:09 Heat of formation + Delta-G solvation = -17.442408 kcal Electronic energy + Delta-G solvation = -20721.372339 eV Core-core repulsion = 17355.402127 eV Total energy + Delta-G solvation = -3365.970211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.32947 -40.17619 -38.99360 -35.64730 -33.29623 -32.20273 -31.67018 -29.71152 -28.32374 -26.59328 -24.97693 -23.11227 -21.04363 -20.42866 -19.51828 -19.25206 -18.05169 -17.13604 -16.64886 -16.44340 -15.84574 -15.26788 -15.03341 -14.73107 -14.43867 -14.21083 -13.46315 -13.31208 -13.15040 -12.61947 -12.36370 -11.87747 -11.74141 -11.54870 -11.41374 -11.23290 -11.07157 -10.95985 -10.35060 -10.05360 -9.70983 -9.60284 -9.44254 -9.38149 -8.87291 -8.81664 -8.62164 -7.22834 -6.19063 -4.38140 0.69552 1.36003 1.66950 2.73613 2.91143 2.99494 3.23205 3.28216 3.31664 3.66077 3.98877 4.17208 4.20164 4.30355 4.89081 5.08225 5.15120 5.22411 5.50851 5.59826 5.71537 5.86277 6.06213 6.10473 6.41115 6.76830 7.01821 7.19622 7.26287 7.43512 7.71750 7.74767 7.76485 7.88797 8.38873 8.55595 8.81910 9.28759 10.78361 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.004395 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.820406 B = 6369.861568 C = 7102.102699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.078 0.922 9 C 0.300 3.700 10 H 0.078 0.922 11 O -0.350 6.350 12 C 0.456 3.544 13 O -0.499 6.499 14 C -0.042 4.042 15 C 0.084 3.916 16 C -0.250 4.250 17 S 0.101 5.899 18 C 0.028 3.972 19 N -0.442 5.442 20 C 0.022 3.978 21 C -0.176 4.176 22 C -0.218 4.218 23 C -0.091 4.091 24 O -0.179 6.179 25 H 0.268 0.732 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.179 0.821 29 H 0.199 0.801 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -15.354 0.627 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.247 3.753 10 H 0.096 0.904 11 O -0.267 6.267 12 C 0.297 3.703 13 O -0.386 6.386 14 C -0.082 4.082 15 C -0.048 4.048 16 C -0.388 4.388 17 S 0.353 5.647 18 C -0.271 4.271 19 N -0.155 5.155 20 C -0.029 4.029 21 C -0.195 4.195 22 C -0.238 4.238 23 C -0.158 4.158 24 O -0.076 6.076 25 H 0.078 0.922 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.197 0.803 29 H 0.216 0.784 30 H 0.163 0.837 31 H 0.148 0.852 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.945 -15.842 1.091 15.998 hybrid contribution 0.166 1.854 -0.664 1.976 sum 2.111 -13.988 0.427 14.153 Atomic orbital electron populations 1.70032 1.05950 1.27599 1.46698 1.24944 0.95131 0.99559 0.94035 0.86224 0.79679 0.81629 0.78378 1.20336 1.20825 1.19357 1.20907 0.94163 0.87588 1.53965 0.90392 1.19167 0.85649 0.81743 0.88761 0.90428 1.86521 1.48477 1.21999 1.69676 1.22998 0.86793 0.84769 0.75727 1.90644 1.22356 1.83118 1.42528 1.19831 0.97960 0.88430 1.02023 1.19721 1.00419 0.94009 0.90649 1.26781 1.09643 0.96947 1.05480 1.83883 1.53632 1.18093 1.09116 1.28407 1.03182 0.90878 1.04638 1.66036 1.10232 1.28221 1.10967 1.23599 0.94423 0.99661 0.85204 1.21296 0.95206 1.06010 0.97022 1.21716 0.99302 1.07106 0.95667 1.23587 0.86755 1.09798 0.95704 1.83980 1.37560 1.66866 1.19175 0.92174 0.86446 0.86240 0.80326 0.78436 0.83687 0.85198 0.79932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 10.48 55.43 0.58 -23.58 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -14.74 8.89 -34.44 -0.31 -15.05 16 8 H 0.08 2.13 7.81 -52.49 -0.41 1.72 16 9 C 0.30 8.07 2.41 -29.04 -0.07 8.00 16 10 H 0.08 2.26 7.15 -51.93 -0.37 1.89 16 11 O -0.35 -8.35 9.84 -42.03 -0.41 -8.77 16 12 C 0.46 9.63 7.89 36.01 0.28 9.92 16 13 O -0.50 -12.08 14.68 -18.75 -0.28 -12.36 16 14 C -0.04 -0.63 6.31 -29.03 -0.18 -0.81 16 15 C 0.08 1.25 5.63 -84.23 -0.47 0.77 16 16 C -0.25 -2.91 11.07 29.12 0.32 -2.58 16 17 S 0.10 1.01 23.22 -107.50 -2.50 -1.49 16 18 C 0.03 0.34 12.23 51.58 0.63 0.97 16 19 N -0.44 -7.12 9.70 -11.90 -0.12 -7.23 16 20 C 0.02 0.58 5.67 -35.63 -0.20 0.38 16 21 C -0.18 -4.48 9.04 -39.70 -0.36 -4.84 16 22 C -0.22 -4.76 10.91 -39.70 -0.43 -5.19 16 23 C -0.09 -1.90 12.09 29.42 0.36 -1.54 16 24 O -0.18 -4.42 10.63 2.08 0.02 -4.40 16 25 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.12 1.37 8.03 -51.93 -0.42 0.95 16 27 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.15 3.81 7.48 -52.48 -0.39 3.42 16 31 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.18 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 306.00 15.07 4.61 4.61 Total: -1.00 -33.84 306.00 -6.48 -40.32 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.84 Total: 5.08 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.53 Total: -8.18 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.47 Total: -30.81 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.67 Total: -25.52 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.84 -6.48 -40.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.878 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds