Wall clock time and date at job start Tue Mar 31 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00006 * 2 1 4 4 H 1.48496 * 109.47217 * 269.99452 * 3 2 1 5 5 H 1.48504 * 109.47417 * 29.99650 * 3 2 1 6 6 H 1.48504 * 109.47294 * 149.99429 * 3 2 1 7 7 C 1.37882 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99944 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46911 * 299.99690 * 9 7 2 11 11 O 1.45202 * 109.46899 * 180.02562 * 9 7 2 12 12 C 1.34228 * 117.00248 * 150.00272 * 11 9 7 13 13 O 1.20825 * 119.99842 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00042 * 179.97438 * 12 11 9 15 15 C 1.50701 * 109.46807 * 179.97438 * 14 12 11 16 16 C 1.33644 * 122.74543 * 125.00456 * 15 14 12 17 17 S 1.76193 * 107.92165 * 179.97438 * 16 15 14 18 18 C 1.70971 * 90.28504 * 0.02562 * 17 16 15 19 19 N 1.29025 * 110.16475 * 359.73431 * 18 17 16 20 20 C 1.50696 * 109.47001 * 60.00016 * 9 7 2 21 21 C 1.34512 * 125.79090 * 265.02000 * 20 9 7 22 22 C 1.41379 * 106.84332 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84086 * 0.02562 * 22 21 20 24 24 O 1.34301 * 125.79037 * 85.02596 * 20 9 7 25 25 H 0.97001 * 120.00003 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47214 * 300.00293 * 14 12 11 27 27 H 1.09001 * 109.46545 * 60.00049 * 14 12 11 28 28 H 1.08000 * 126.03835 * 359.97438 * 16 15 14 29 29 H 1.07999 * 124.91575 * 179.97438 * 18 17 16 30 30 H 1.08007 * 126.58045 * 0.02562 * 21 20 9 31 31 H 1.07996 * 126.58354 * 180.02562 * 22 21 20 32 32 H 1.07998 * 125.79383 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8029 -4.7389 0.5999 13 8 0.7080 -4.8086 1.1061 14 6 2.7287 -5.9272 0.6400 15 6 2.0548 -7.0647 1.3632 16 6 1.9037 -8.2772 0.8217 17 16 1.0736 -9.2957 1.9956 18 6 1.0116 -7.9898 3.0975 19 7 1.5708 -6.9470 2.5832 20 6 0.3851 -2.5792 -1.2302 21 6 -0.9134 -2.2354 -1.3023 22 6 -1.3257 -2.4693 -2.6342 23 6 -0.2548 -2.9425 -3.2964 24 8 0.7789 -3.0061 -2.4412 25 1 -0.4850 0.8401 -0.0004 26 1 2.9694 -6.2348 -0.3775 27 1 3.6452 -5.6561 1.1641 28 1 2.2323 -8.5793 -0.1617 29 1 0.5717 -8.0328 4.0829 30 1 -1.5238 -1.8539 -0.4971 31 1 -2.3114 -2.3003 -3.0419 32 1 -0.2300 -3.2232 -4.3389 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:08 Heat of formation + Delta-G solvation = -39.358051 kcal Electronic energy + Delta-G solvation = -20722.322672 eV Core-core repulsion = 17355.402127 eV Total energy + Delta-G solvation = -3366.920545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.17821 -41.52057 -40.39155 -37.46741 -35.31612 -33.52920 -33.36642 -31.56479 -29.50280 -28.50913 -26.01090 -25.00090 -22.68745 -22.23620 -21.15201 -20.47176 -19.33212 -18.78419 -18.48872 -18.14525 -17.13882 -17.06718 -16.51133 -16.42400 -16.24815 -15.43249 -14.86368 -14.66853 -14.33384 -14.13914 -13.88258 -13.52276 -13.50277 -13.30299 -13.14275 -12.97105 -12.82238 -12.38549 -12.21003 -11.99867 -11.43065 -11.33255 -10.82169 -10.54869 -10.51341 -10.37126 -9.77862 -9.11393 -8.23268 -6.53637 -0.20558 0.52160 0.76313 1.10458 1.34518 1.39299 1.42180 1.52048 1.64445 2.02122 2.19630 2.40524 2.45914 3.00983 3.23374 3.85757 4.02019 4.17548 4.27692 4.39914 4.43710 4.47059 4.58726 4.64834 4.72025 5.09452 5.16039 5.34963 5.42541 5.47310 5.67588 5.84696 5.97189 6.47854 6.59601 6.85004 6.95559 7.19001 8.72343 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020662 B = 0.004395 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.820406 B = 6369.861568 C = 7102.102699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.023 3.977 3 Si 0.982 3.018 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.304 3.696 10 H 0.036 0.964 11 O -0.358 6.358 12 C 0.448 3.552 13 O -0.537 6.537 14 C -0.031 4.031 15 C 0.046 3.954 16 C -0.245 4.245 17 S 0.174 5.826 18 C 0.008 3.992 19 N -0.498 5.498 20 C -0.007 4.007 21 C -0.193 4.193 22 C -0.230 4.230 23 C -0.069 4.069 24 O -0.194 6.194 25 H 0.270 0.730 26 H 0.154 0.846 27 H 0.137 0.863 28 H 0.210 0.790 29 H 0.220 0.780 30 H 0.123 0.877 31 H 0.165 0.835 32 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -16.749 -1.252 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.094 0.906 9 C 0.250 3.750 10 H 0.053 0.947 11 O -0.275 6.275 12 C 0.291 3.709 13 O -0.427 6.427 14 C -0.070 4.070 15 C -0.086 4.086 16 C -0.384 4.384 17 S 0.427 5.573 18 C -0.290 4.290 19 N -0.212 5.212 20 C -0.057 4.057 21 C -0.212 4.212 22 C -0.249 4.249 23 C -0.135 4.135 24 O -0.091 6.091 25 H 0.080 0.920 26 H 0.171 0.829 27 H 0.154 0.846 28 H 0.227 0.773 29 H 0.237 0.763 30 H 0.141 0.859 31 H 0.182 0.818 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.563 -17.271 -0.776 17.478 hybrid contribution -0.124 2.105 -0.086 2.110 sum 2.439 -15.167 -0.862 15.386 Atomic orbital electron populations 1.70175 1.07288 1.28427 1.46756 1.25853 0.96043 1.02871 0.93208 0.85190 0.78631 0.77077 0.78593 1.19760 1.20014 1.18472 1.21180 0.94226 0.88748 1.55152 0.90636 1.18684 0.85595 0.82767 0.87985 0.94654 1.86511 1.47959 1.22563 1.70439 1.24329 0.87395 0.85093 0.74063 1.90611 1.24482 1.83584 1.43975 1.19988 0.96769 0.85727 1.04533 1.19767 1.02707 0.95017 0.91075 1.27229 1.07995 0.96318 1.06851 1.83600 1.51475 1.15458 1.06791 1.28831 1.02696 0.91319 1.06136 1.66012 1.12215 1.30642 1.12352 1.23333 0.94715 1.01811 0.85872 1.21350 0.95134 1.06217 0.98530 1.22056 1.01445 1.07492 0.93910 1.24693 0.85053 1.06672 0.97116 1.83952 1.39040 1.67129 1.18981 0.92045 0.82876 0.84573 0.77287 0.76335 0.85922 0.81781 0.74188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.35 10.48 21.45 0.22 -51.13 16 2 C 0.02 1.30 5.30 84.66 0.45 1.75 16 3 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 7 C -0.56 -32.22 8.89 25.60 0.23 -32.00 16 8 H 0.08 4.26 7.81 -2.91 -0.02 4.24 16 9 C 0.30 17.28 2.41 29.10 0.07 17.35 16 10 H 0.04 2.26 7.15 -2.39 -0.02 2.25 16 11 O -0.36 -17.85 9.84 -48.73 -0.48 -18.33 16 12 C 0.45 19.67 7.89 71.24 0.56 20.23 16 13 O -0.54 -27.57 14.68 21.97 0.32 -27.25 16 14 C -0.03 -0.90 6.31 29.10 0.18 -0.72 16 15 C 0.05 1.33 5.63 41.52 0.23 1.57 16 16 C -0.24 -5.12 11.07 66.78 0.74 -4.38 16 17 S 0.17 3.05 23.22 -56.49 -1.31 1.73 16 18 C 0.01 0.19 12.23 130.65 1.60 1.79 16 19 N -0.50 -16.26 9.70 -191.56 -1.86 -18.12 16 20 C -0.01 -0.37 5.67 24.83 0.14 -0.23 16 21 C -0.19 -10.10 9.04 22.19 0.20 -9.90 16 22 C -0.23 -9.70 10.91 22.19 0.24 -9.46 16 23 C -0.07 -2.69 12.09 66.97 0.81 -1.88 16 24 O -0.19 -9.48 10.63 1.00 0.01 -9.47 16 25 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.15 3.27 8.03 -2.39 -0.02 3.25 16 27 H 0.14 3.45 8.14 -2.39 -0.02 3.43 16 28 H 0.21 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.22 3.70 8.06 -2.91 -0.02 3.67 16 30 H 0.12 6.86 7.48 -2.91 -0.02 6.84 16 31 H 0.16 5.62 8.06 -2.91 -0.02 5.60 16 32 H 0.24 6.25 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -78.73 306.00 5.55 -73.18 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.16 Total: 19.68 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 5.46 Total: -15.88 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.63 Total: -69.25 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -0.15 Total: -55.05 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.31 Total: 1.73 kcal Total: -78.73 5.55 -73.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.820 kcal (2) G-P(sol) polarization free energy of solvation -78.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds