Wall clock time and date at job start Tue Mar 31 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00362 * 2 1 4 4 H 1.07997 * 120.00099 * 170.83801 * 3 2 1 5 5 C 1.38818 * 119.99653 * 350.84124 * 3 2 1 6 6 N 1.31615 * 120.00230 * 7.53666 * 5 3 2 7 7 Si 1.86797 * 119.99822 * 187.53497 * 5 3 2 8 8 H 1.48506 * 109.47025 * 60.00022 * 7 5 3 9 9 H 1.48501 * 109.47358 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47423 * 300.00270 * 7 5 3 11 11 C 1.46499 * 119.99719 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47403 * 270.81865 * 11 2 1 13 13 C 1.38244 * 119.98912 * 0.94983 * 12 11 2 14 14 C 1.38335 * 119.98135 * 180.31504 * 13 12 11 15 15 Cl 1.73602 * 120.00975 * 179.72614 * 14 13 12 16 16 C 1.38370 * 119.97660 * 359.71221 * 14 13 12 17 17 C 1.38195 * 119.98530 * 359.97438 * 16 14 13 18 18 C 1.38211 * 119.99659 * 180.70288 * 12 11 2 19 19 C 1.50698 * 119.98755 * 359.97438 * 18 12 11 20 20 F 1.39900 * 109.47557 * 179.97438 * 19 18 12 21 21 F 1.39899 * 109.47251 * 59.97372 * 19 18 12 22 22 F 1.39904 * 109.47429 * 299.97668 * 19 18 12 23 23 H 1.08999 * 109.47285 * 185.09231 * 1 2 3 24 24 H 1.09004 * 109.46650 * 305.09291 * 1 2 3 25 25 H 1.09002 * 109.46600 * 65.08818 * 1 2 3 26 26 H 0.96997 * 119.99771 * 179.97438 * 6 5 3 27 27 H 1.09003 * 109.47212 * 150.81933 * 11 2 1 28 28 H 1.09004 * 109.47350 * 30.82138 * 11 2 1 29 29 H 1.07997 * 120.00660 * 0.04814 * 13 12 11 30 30 H 1.08003 * 120.01060 * 179.97438 * 16 14 13 31 31 H 1.07996 * 119.99242 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2194 1.1918 0.1489 5 6 1.4690 2.3804 -0.1914 6 7 0.1533 2.3900 -0.2244 7 14 2.4202 3.9741 -0.4019 8 1 3.3034 3.8700 -1.5912 9 1 1.4679 5.0981 -0.5888 10 1 3.2458 4.2214 0.8075 11 6 2.1975 -1.2688 -0.0006 12 6 2.4311 -1.7146 1.4199 13 6 1.9517 -0.9545 2.4704 14 6 2.1719 -1.3606 3.7743 15 17 1.5765 -0.4029 5.0942 16 6 2.8666 -2.5304 4.0262 17 6 3.3396 -3.2928 2.9750 18 6 3.1200 -2.8860 1.6720 19 6 3.6369 -3.7173 0.5262 20 9 4.2954 -4.8450 1.0280 21 9 4.5299 -2.9567 -0.2362 22 9 2.5653 -4.1220 -0.2771 23 1 -0.3634 -1.0236 0.0912 24 1 -0.3633 0.5908 0.8409 25 1 -0.3632 0.4329 -0.9321 26 1 -0.3224 3.2248 -0.3578 27 1 3.1562 -1.1346 -0.5016 28 1 1.6148 -2.0245 -0.5275 29 1 1.4093 -0.0417 2.2732 30 1 3.0392 -2.8478 5.0440 31 1 3.8815 -4.2061 3.1715 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140566703.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:28 Heat of formation + Delta-G solvation = -100.184395 kcal Electronic energy + Delta-G solvation = -21787.998046 eV Core-core repulsion = 17874.539426 eV Total energy + Delta-G solvation = -3913.458620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01777 -47.55776 -47.41990 -39.41260 -36.46137 -35.66925 -32.33637 -31.48128 -30.12400 -26.64344 -25.94173 -25.33052 -22.55784 -21.61870 -20.50855 -18.30045 -18.26911 -18.08649 -16.87687 -16.23938 -15.42057 -14.81067 -14.52307 -14.35305 -14.19982 -13.99152 -13.67105 -13.62753 -13.57731 -13.50784 -13.29864 -12.99709 -12.76167 -11.82344 -11.73601 -11.44147 -11.21188 -11.06903 -10.91666 -10.75203 -10.62616 -10.30852 -10.14123 -9.86053 -8.76663 -8.63101 -8.53693 -7.07640 -5.73950 -3.19271 0.96851 1.44294 2.24111 2.84511 3.36747 3.42335 3.42933 3.57501 3.90139 4.20511 4.42061 4.60803 4.89998 4.92344 5.27458 5.36309 5.49871 5.57018 5.82660 6.01768 6.11042 6.17338 6.26281 6.49189 6.69038 6.72629 6.98728 7.54990 7.65867 7.85813 8.27836 9.17374 9.77188 10.20393 11.25380 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.006838 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.082191 B = 4093.945878 C = 5423.755484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.604 5.604 3 C -0.257 4.257 4 H 0.075 0.925 5 C 0.004 3.996 6 N -0.913 5.913 7 Si 0.907 3.093 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.165 3.835 12 C -0.029 4.029 13 C -0.082 4.082 14 C -0.010 4.010 15 Cl -0.069 7.069 16 C -0.133 4.133 17 C -0.070 4.070 18 C -0.196 4.196 19 C 0.512 3.488 20 F -0.183 7.183 21 F -0.174 7.174 22 F -0.175 7.175 23 H -0.007 1.007 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.253 0.747 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.167 0.833 30 H 0.135 0.865 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.679 -11.794 6.485 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.093 0.907 5 C -0.194 4.194 6 N -0.559 5.559 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.036 3.964 12 C -0.033 4.033 13 C -0.100 4.100 14 C -0.036 4.036 15 Cl -0.040 7.040 16 C -0.152 4.152 17 C -0.089 4.089 18 C -0.198 4.198 19 C 0.458 3.542 20 F -0.165 7.165 21 F -0.155 7.155 22 F -0.157 7.157 23 H 0.011 0.989 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.184 0.816 30 H 0.153 0.847 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.480 -11.532 6.517 13.983 hybrid contribution 0.560 0.834 -0.049 1.006 sum 5.040 -10.698 6.468 13.479 Atomic orbital electron populations 1.21136 0.81165 0.93333 1.02222 1.44029 1.02509 1.00051 1.85996 1.19238 0.91925 0.83714 1.43651 0.90736 1.24900 0.95688 0.98031 1.00736 1.70200 1.05212 1.25524 1.54967 0.86289 0.78798 0.82965 0.78256 1.21004 1.21550 1.20989 1.20135 0.97927 0.89610 0.88735 1.21430 0.90781 0.90269 1.00805 1.21416 0.98759 1.01359 0.88463 1.21266 0.99129 0.93594 0.89647 1.98369 1.86864 1.71510 1.47222 1.20859 1.00377 0.94288 0.99651 1.20765 0.98131 0.99497 0.90481 1.19905 1.08073 0.98908 0.92885 1.18260 0.75467 0.77817 0.82632 1.93128 1.81947 1.54092 1.87295 1.93214 1.69167 1.75522 1.77595 1.93202 1.55886 1.91092 1.75497 0.98872 0.93328 0.93811 0.93670 0.90538 0.91365 0.81600 0.84682 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.94 8.39 59.85 0.50 4.44 16 2 N -0.60 -14.37 1.74 -182.49 -0.32 -14.69 16 3 C -0.26 -6.70 9.27 -15.06 -0.14 -6.84 16 4 H 0.07 1.92 7.84 -52.49 -0.41 1.51 16 5 C 0.00 0.10 5.45 -17.43 -0.10 0.00 16 6 N -0.91 -25.40 9.49 55.49 0.53 -24.87 16 7 Si 0.91 21.44 29.56 -169.99 -5.02 16.41 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.16 3.28 4.75 -5.20 -0.02 3.26 16 12 C -0.03 -0.52 5.84 -104.63 -0.61 -1.13 16 13 C -0.08 -1.51 8.94 -39.54 -0.35 -1.86 16 14 C -0.01 -0.15 6.32 -39.50 -0.25 -0.40 16 15 Cl -0.07 -1.02 28.96 -51.86 -1.50 -2.52 16 16 C -0.13 -1.76 9.83 -39.55 -0.39 -2.15 16 17 C -0.07 -0.93 9.43 -39.59 -0.37 -1.30 16 18 C -0.20 -3.01 5.37 -104.62 -0.56 -3.57 16 19 C 0.51 7.49 2.88 36.00 0.10 7.59 16 20 F -0.18 -2.41 15.97 2.25 0.04 -2.38 16 21 F -0.17 -2.70 15.74 2.25 0.04 -2.66 16 22 F -0.18 -2.65 15.79 2.25 0.04 -2.61 16 23 H -0.01 -0.16 7.85 -51.93 -0.41 -0.56 16 24 H 0.05 1.24 7.03 -51.93 -0.36 0.88 16 25 H 0.04 1.14 7.04 -51.93 -0.37 0.77 16 26 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.08 1.53 6.81 -51.93 -0.35 1.18 16 28 H 0.07 1.29 6.84 -51.93 -0.36 0.94 16 29 H 0.17 3.59 6.14 -52.49 -0.32 3.27 16 30 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.14 1.45 7.16 -52.49 -0.38 1.07 16 LS Contribution 288.12 15.07 4.34 4.34 Total: -1.00 -26.80 288.12 -6.57 -33.37 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -2.51 Total: -2.44 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.19 Total: -1.96 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.21 Total: -39.56 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.11 Total: -7.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.80 -6.57 -33.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140566703.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.812 kcal (2) G-P(sol) polarization free energy of solvation -26.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds