Wall clock time and date at job start Tue Mar 31 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00362 * 2 1 4 4 H 1.07997 * 120.00099 * 170.83801 * 3 2 1 5 5 C 1.38818 * 119.99653 * 350.84124 * 3 2 1 6 6 N 1.31615 * 120.00230 * 7.53666 * 5 3 2 7 7 Si 1.86797 * 119.99822 * 187.53497 * 5 3 2 8 8 H 1.48506 * 109.47025 * 60.00022 * 7 5 3 9 9 H 1.48501 * 109.47358 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47423 * 300.00270 * 7 5 3 11 11 C 1.46499 * 119.99719 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47403 * 270.81865 * 11 2 1 13 13 C 1.38244 * 119.98912 * 0.94983 * 12 11 2 14 14 C 1.38335 * 119.98135 * 180.31504 * 13 12 11 15 15 Cl 1.73602 * 120.00975 * 179.72614 * 14 13 12 16 16 C 1.38370 * 119.97660 * 359.71221 * 14 13 12 17 17 C 1.38195 * 119.98530 * 359.97438 * 16 14 13 18 18 C 1.38211 * 119.99659 * 180.70288 * 12 11 2 19 19 C 1.50698 * 119.98755 * 359.97438 * 18 12 11 20 20 F 1.39900 * 109.47557 * 179.97438 * 19 18 12 21 21 F 1.39899 * 109.47251 * 59.97372 * 19 18 12 22 22 F 1.39904 * 109.47429 * 299.97668 * 19 18 12 23 23 H 1.08999 * 109.47285 * 185.09231 * 1 2 3 24 24 H 1.09004 * 109.46650 * 305.09291 * 1 2 3 25 25 H 1.09002 * 109.46600 * 65.08818 * 1 2 3 26 26 H 0.96997 * 119.99771 * 179.97438 * 6 5 3 27 27 H 1.09003 * 109.47212 * 150.81933 * 11 2 1 28 28 H 1.09004 * 109.47350 * 30.82138 * 11 2 1 29 29 H 1.07997 * 120.00660 * 0.04814 * 13 12 11 30 30 H 1.08003 * 120.01060 * 179.97438 * 16 14 13 31 31 H 1.07996 * 119.99242 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2194 1.1918 0.1489 5 6 1.4690 2.3804 -0.1914 6 7 0.1533 2.3900 -0.2244 7 14 2.4202 3.9741 -0.4019 8 1 3.3034 3.8700 -1.5912 9 1 1.4679 5.0981 -0.5888 10 1 3.2458 4.2214 0.8075 11 6 2.1975 -1.2688 -0.0006 12 6 2.4311 -1.7146 1.4199 13 6 1.9517 -0.9545 2.4704 14 6 2.1719 -1.3606 3.7743 15 17 1.5765 -0.4029 5.0942 16 6 2.8666 -2.5304 4.0262 17 6 3.3396 -3.2928 2.9750 18 6 3.1200 -2.8860 1.6720 19 6 3.6369 -3.7173 0.5262 20 9 4.2954 -4.8450 1.0280 21 9 4.5299 -2.9567 -0.2362 22 9 2.5653 -4.1220 -0.2771 23 1 -0.3634 -1.0236 0.0912 24 1 -0.3633 0.5908 0.8409 25 1 -0.3632 0.4329 -0.9321 26 1 -0.3224 3.2248 -0.3578 27 1 3.1562 -1.1346 -0.5016 28 1 1.6148 -2.0245 -0.5275 29 1 1.4093 -0.0417 2.2732 30 1 3.0392 -2.8478 5.0440 31 1 3.8815 -4.2061 3.1715 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140566703.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:28 Heat of formation + Delta-G solvation = -112.089057 kcal Electronic energy + Delta-G solvation = -21788.514271 eV Core-core repulsion = 17874.539426 eV Total energy + Delta-G solvation = -3913.974845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.17437 -48.67889 -48.61212 -40.68954 -37.81496 -37.29751 -33.98258 -32.80888 -31.71622 -28.25844 -27.83022 -26.61473 -24.11709 -22.90229 -22.08741 -19.46726 -19.44450 -19.29506 -18.79004 -17.51559 -17.02643 -16.34457 -15.85663 -15.66136 -15.39504 -15.33600 -15.13434 -14.98920 -14.86414 -14.77233 -14.68251 -14.48442 -14.00442 -13.44424 -13.40101 -13.00509 -12.67008 -12.62269 -12.49825 -12.40161 -12.14821 -12.03724 -11.87536 -11.81777 -10.64425 -10.00008 -9.82552 -9.03041 -7.77751 -5.23508 -0.26192 0.22667 1.03374 1.47164 1.48681 1.54887 1.67084 2.33701 2.48726 2.72529 3.05112 3.30944 3.43063 3.52488 3.72899 3.90750 4.18321 4.28931 4.53376 4.55314 4.63165 4.82071 4.89813 4.97862 5.22394 5.33150 5.53661 5.59994 5.66076 5.83614 6.27740 7.14638 7.83008 8.22390 9.20301 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.006838 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.082191 B = 4093.945878 C = 5423.755484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.616 5.616 3 C -0.254 4.254 4 H 0.075 0.925 5 C -0.050 4.050 6 N -0.939 5.939 7 Si 0.965 3.035 8 H -0.279 1.279 9 H -0.295 1.295 10 H -0.279 1.279 11 C 0.168 3.832 12 C -0.046 4.046 13 C -0.104 4.104 14 C -0.014 4.014 15 Cl -0.064 7.064 16 C -0.116 4.116 17 C -0.055 4.055 18 C -0.195 4.195 19 C 0.517 3.483 20 F -0.170 7.170 21 F -0.181 7.181 22 F -0.179 7.179 23 H 0.017 0.983 24 H 0.023 0.977 25 H 0.016 0.984 26 H 0.246 0.754 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.173 0.827 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 -13.662 7.848 16.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.338 5.338 3 C -0.384 4.384 4 H 0.093 0.907 5 C -0.244 4.244 6 N -0.587 5.587 7 Si 0.793 3.207 8 H -0.206 1.206 9 H -0.221 1.221 10 H -0.205 1.205 11 C 0.041 3.959 12 C -0.050 4.050 13 C -0.123 4.123 14 C -0.041 4.041 15 Cl -0.035 7.035 16 C -0.134 4.134 17 C -0.073 4.073 18 C -0.197 4.197 19 C 0.463 3.537 20 F -0.151 7.151 21 F -0.162 7.162 22 F -0.160 7.160 23 H 0.036 0.964 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.145 0.855 30 H 0.191 0.809 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.130 -13.435 7.885 16.740 hybrid contribution 0.102 1.289 -0.389 1.350 sum 6.232 -12.146 7.496 15.574 Atomic orbital electron populations 1.20760 0.81596 0.93943 0.99611 1.44121 1.02502 1.00946 1.86274 1.19460 0.92013 0.84731 1.42166 0.90745 1.25583 0.96499 1.00784 1.01563 1.70383 1.06294 1.25531 1.56525 0.85374 0.77505 0.79561 0.78227 1.20556 1.22075 1.20487 1.20153 0.97315 0.88064 0.90389 1.20956 0.93045 0.91900 0.99053 1.21067 1.00253 1.00735 0.90200 1.21352 0.99450 0.94574 0.88740 1.98371 1.86904 1.71697 1.46557 1.21278 0.98037 0.92479 1.01586 1.21200 0.96768 1.00200 0.89103 1.19972 1.07491 0.97925 0.94330 1.18128 0.75324 0.78005 0.82268 1.93154 1.81629 1.53272 1.87047 1.93205 1.69368 1.75828 1.77788 1.93198 1.56125 1.91101 1.75618 0.96421 0.95850 0.96590 0.94425 0.90966 0.90655 0.85469 0.80942 0.80666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.15 8.39 127.77 1.07 10.22 16 2 N -0.62 -30.00 1.74 -731.29 -1.27 -31.27 16 3 C -0.25 -13.56 9.27 84.04 0.78 -12.78 16 4 H 0.07 3.88 7.84 -2.91 -0.02 3.86 16 5 C -0.05 -2.76 5.45 84.86 0.46 -2.30 16 6 N -0.94 -54.13 9.49 21.65 0.21 -53.93 16 7 Si 0.96 44.83 29.56 68.60 2.03 46.86 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 C 0.17 6.69 4.75 85.63 0.41 7.10 16 12 C -0.05 -1.62 5.84 -19.87 -0.12 -1.73 16 13 C -0.10 -3.82 8.94 22.29 0.20 -3.62 16 14 C -0.01 -0.43 6.32 22.32 0.14 -0.29 16 15 Cl -0.06 -1.83 28.96 -2.72 -0.08 -1.91 16 16 C -0.12 -2.59 9.83 22.29 0.22 -2.37 16 17 C -0.05 -1.20 9.43 22.27 0.21 -0.99 16 18 C -0.20 -5.51 5.37 -19.86 -0.11 -5.61 16 19 C 0.52 13.82 2.88 71.24 0.21 14.03 16 20 F -0.17 -3.85 15.97 44.97 0.72 -3.13 16 21 F -0.18 -5.30 15.74 44.97 0.71 -4.59 16 22 F -0.18 -5.06 15.79 44.97 0.71 -4.35 16 23 H 0.02 0.75 7.85 -2.39 -0.02 0.73 16 24 H 0.02 1.25 7.03 -2.39 -0.02 1.23 16 25 H 0.02 0.85 7.04 -2.39 -0.02 0.84 16 26 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 27 H 0.07 2.89 6.81 -2.39 -0.02 2.88 16 28 H 0.08 2.83 6.84 -2.38 -0.02 2.82 16 29 H 0.13 5.73 6.14 -2.91 -0.02 5.72 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.18 2.61 7.16 -2.91 -0.02 2.59 16 Total: -1.00 -58.89 288.12 7.67 -51.22 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: 1.18 Total: -0.54 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 3.47 Total: 1.65 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -1.07 Total: -85.20 kcal Atomic # 9 Polarization: -14.21 SS G_CDS: 2.14 Total: -12.07 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.08 Total: -1.91 kcal Total: -58.89 7.67 -51.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140566703.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.865 kcal (2) G-P(sol) polarization free energy of solvation -58.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds