Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 119.99991 * 2 1 4 4 C 1.50694 * 109.47048 * 269.99252 * 3 2 1 5 5 H 1.08002 * 119.99853 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00417 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99281 * 0.02562 * 6 4 3 8 8 Si 1.86789 * 120.00385 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47078 * 120.00355 * 8 6 4 11 11 H 1.48498 * 109.47500 * 240.00223 * 8 6 4 12 12 C 1.34777 * 120.00106 * 179.97438 * 2 1 3 13 13 O 1.21620 * 120.00455 * 185.23738 * 12 2 1 14 14 C 1.47342 * 120.00058 * 5.23437 * 12 2 1 15 15 C 1.39440 * 120.35364 * 306.58414 * 14 12 2 16 16 C 1.38162 * 120.10499 * 179.97438 * 15 14 12 17 17 C 1.38273 * 120.88206 * 359.96941 * 16 15 14 18 18 Cl 1.73601 * 119.86218 * 180.02562 * 17 16 15 19 19 C 1.38986 * 120.27759 * 0.04648 * 17 16 15 20 20 O 1.34898 * 133.33010 * 179.97438 * 19 17 16 21 21 C 1.34312 * 110.84161 * 180.02562 * 20 19 17 22 22 C 1.34281 * 110.08209 * 0.26710 * 21 20 19 23 23 C 1.40378 * 119.40505 * 359.95903 * 19 17 16 24 24 H 1.08996 * 109.47477 * 305.44963 * 1 2 3 25 25 H 1.09003 * 109.47195 * 65.44786 * 1 2 3 26 26 H 1.09005 * 109.47239 * 185.44356 * 1 2 3 27 27 H 1.08996 * 109.46946 * 29.99823 * 3 2 1 28 28 H 1.08999 * 109.46828 * 149.99467 * 3 2 1 29 29 H 0.97002 * 119.99708 * 179.97438 * 7 6 4 30 30 H 1.07996 * 119.94453 * 359.97438 * 15 14 12 31 31 H 1.08003 * 119.55926 * 179.97438 * 16 15 14 32 32 H 1.08005 * 124.96035 * 180.02562 * 21 20 19 33 33 H 1.08002 * 126.90221 * 179.71908 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2416 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6732 8 14 3.4370 3.4173 -3.4339 9 1 2.8592 2.4173 -4.3673 10 1 2.7990 4.7379 -3.6670 11 1 4.8994 3.5260 -3.6676 12 6 2.1388 -1.1672 0.0005 13 8 3.3512 -1.1694 0.0967 14 6 1.4068 -2.4406 -0.1153 15 6 0.3605 -2.7340 0.7586 16 6 -0.3228 -3.9294 0.6450 17 6 0.0147 -4.8499 -0.3300 18 17 -0.8621 -6.3435 -0.4493 19 6 1.0533 -4.5847 -1.2147 20 8 1.5945 -5.2740 -2.2402 21 6 2.6010 -4.5840 -2.8014 22 6 2.7686 -3.4135 -2.1651 23 6 1.7556 -3.3738 -1.1099 24 1 -0.3634 0.5960 0.8371 25 1 -0.3634 0.4270 -0.9348 26 1 -0.3634 -1.0231 0.0975 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1384 0.5139 29 1 4.0301 4.4439 -0.8504 30 1 0.0840 -2.0256 1.5254 31 1 -1.1314 -4.1478 1.3268 32 1 3.1920 -4.9230 -3.6395 33 1 3.5020 -2.6529 -2.3890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142404372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = 0.781879 kcal Electronic energy + Delta-G solvation = -20697.601997 eV Core-core repulsion = 17330.378344 eV Total energy + Delta-G solvation = -3367.223653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.57010 -39.47560 -37.67891 -36.47290 -34.94070 -32.75216 -32.65421 -30.69513 -29.61662 -27.70429 -26.04069 -24.15527 -23.00117 -22.49287 -21.49120 -19.04247 -17.62630 -17.40279 -16.58529 -16.35035 -16.23260 -15.89606 -15.43580 -14.65920 -14.38920 -13.90703 -13.47144 -13.17046 -13.02432 -12.82460 -12.71498 -12.18945 -12.13149 -11.96953 -11.77319 -11.44427 -11.22427 -11.11926 -10.91212 -10.63431 -10.21955 -10.05567 -9.67234 -9.16725 -8.77119 -8.48742 -8.20965 -7.72989 -6.09393 -4.14397 0.46358 1.06419 1.85341 2.27244 2.58301 3.06809 3.26512 3.33978 3.37233 3.50547 3.88974 4.36748 4.39711 4.59400 4.76813 4.89425 5.00203 5.24237 5.27561 5.32690 5.56176 5.67175 5.80885 5.84972 5.91872 6.10340 6.20668 6.28510 6.33435 6.92485 6.97847 7.36403 7.43663 7.86575 8.16816 8.26633 8.79098 8.95163 9.50748 10.98862 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.004321 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.624878 B = 6477.804195 C = 7117.579284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.590 5.590 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.547 3.453 13 O -0.528 6.528 14 C -0.053 4.053 15 C -0.103 4.103 16 C -0.088 4.088 17 C -0.017 4.017 18 Cl -0.062 7.062 19 C 0.055 3.945 20 O -0.186 6.186 21 C 0.004 3.996 22 C -0.187 4.187 23 C -0.080 4.080 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.214 0.786 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 -16.539 0.366 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.321 5.321 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.332 3.668 13 O -0.406 6.406 14 C -0.056 4.056 15 C -0.122 4.122 16 C -0.107 4.107 17 C -0.044 4.044 18 Cl -0.033 7.033 19 C 0.006 3.994 20 O -0.087 6.087 21 C -0.060 4.060 22 C -0.206 4.206 23 C -0.082 4.082 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.230 0.770 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.698 -16.709 0.371 18.842 hybrid contribution 0.178 0.491 -1.067 1.188 sum -8.520 -16.219 -0.696 18.334 Atomic orbital electron populations 1.22053 0.81272 1.02240 1.02302 1.48098 1.06429 1.07435 1.70134 1.19363 0.92690 0.77649 0.97777 1.21444 1.36652 1.06441 0.92181 0.92374 1.24929 0.95288 0.96311 0.97496 1.69940 1.38268 1.14320 1.30693 0.86439 0.78100 0.78397 0.84486 1.19789 1.20889 1.20810 1.17908 0.87259 0.83100 0.78490 1.90796 1.13180 1.86831 1.49775 1.19810 0.95727 0.95231 0.94858 1.21198 0.94478 0.96852 0.99690 1.20740 1.00821 0.92236 0.96858 1.19728 0.95314 0.91048 0.98348 1.98372 1.74983 1.32154 1.97761 1.19003 0.96961 0.91739 0.91670 1.84046 1.42224 1.43353 1.39078 1.24106 0.90476 0.92031 0.99409 1.22698 1.01513 0.99754 0.96606 1.19643 0.97307 0.93490 0.97735 0.92123 0.92194 0.90795 0.94646 0.93469 0.92689 0.83347 0.83244 0.76955 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.03 10.04 59.84 0.60 1.63 16 2 N -0.59 -12.48 2.86 -184.27 -0.53 -13.01 16 3 C 0.24 6.30 5.25 -5.20 -0.03 6.28 16 4 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.55 11.62 7.10 -12.56 -0.09 11.54 16 13 O -0.53 -13.38 16.63 5.26 0.09 -13.29 16 14 C -0.05 -0.89 5.06 -104.79 -0.53 -1.42 16 15 C -0.10 -1.32 7.34 -39.16 -0.29 -1.61 16 16 C -0.09 -0.96 9.77 -39.60 -0.39 -1.35 16 17 C -0.02 -0.22 6.33 -39.29 -0.25 -0.46 16 18 Cl -0.06 -0.68 28.95 -51.86 -1.50 -2.18 16 19 C 0.05 0.80 7.19 -38.50 -0.28 0.52 16 20 O -0.19 -2.53 10.58 4.03 0.04 -2.49 16 21 C 0.00 0.05 11.97 29.34 0.35 0.40 16 22 C -0.19 -2.86 11.03 -37.73 -0.42 -3.28 16 23 C -0.08 -1.32 6.17 -104.88 -0.65 -1.96 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.96 3.93 -51.93 -0.20 0.75 16 27 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.05 1.37 7.35 -51.93 -0.38 0.99 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.15 1.58 7.10 -52.49 -0.37 1.21 16 31 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.21 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.17 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -33.50 308.28 -6.95 -40.45 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -3.04 Total: -2.00 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.38 Total: -3.20 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.21 Total: -38.47 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.13 Total: -15.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.50 -6.95 -40.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142404372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.234 kcal (2) G-P(sol) polarization free energy of solvation -33.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds