Wall clock time and date at job start Tue Mar 31 2020 06:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 119.99991 * 2 1 4 4 C 1.50694 * 109.47048 * 269.99252 * 3 2 1 5 5 H 1.08002 * 119.99853 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00417 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99281 * 0.02562 * 6 4 3 8 8 Si 1.86789 * 120.00385 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47078 * 120.00355 * 8 6 4 11 11 H 1.48498 * 109.47500 * 240.00223 * 8 6 4 12 12 C 1.34777 * 120.00106 * 179.97438 * 2 1 3 13 13 O 1.21620 * 120.00455 * 185.23738 * 12 2 1 14 14 C 1.47342 * 120.00058 * 5.23437 * 12 2 1 15 15 C 1.39440 * 120.35364 * 306.58414 * 14 12 2 16 16 C 1.38162 * 120.10499 * 179.97438 * 15 14 12 17 17 C 1.38273 * 120.88206 * 359.96941 * 16 15 14 18 18 Cl 1.73601 * 119.86218 * 180.02562 * 17 16 15 19 19 C 1.38986 * 120.27759 * 0.04648 * 17 16 15 20 20 O 1.34898 * 133.33010 * 179.97438 * 19 17 16 21 21 C 1.34312 * 110.84161 * 180.02562 * 20 19 17 22 22 C 1.34281 * 110.08209 * 0.26710 * 21 20 19 23 23 C 1.40378 * 119.40505 * 359.95903 * 19 17 16 24 24 H 1.08996 * 109.47477 * 305.44963 * 1 2 3 25 25 H 1.09003 * 109.47195 * 65.44786 * 1 2 3 26 26 H 1.09005 * 109.47239 * 185.44356 * 1 2 3 27 27 H 1.08996 * 109.46946 * 29.99823 * 3 2 1 28 28 H 1.08999 * 109.46828 * 149.99467 * 3 2 1 29 29 H 0.97002 * 119.99708 * 179.97438 * 7 6 4 30 30 H 1.07996 * 119.94453 * 359.97438 * 15 14 12 31 31 H 1.08003 * 119.55926 * 179.97438 * 16 15 14 32 32 H 1.08005 * 124.96035 * 180.02562 * 21 20 19 33 33 H 1.08002 * 126.90221 * 179.71908 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2416 6 6 3.1261 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6732 8 14 3.4370 3.4173 -3.4339 9 1 2.8592 2.4173 -4.3673 10 1 2.7990 4.7379 -3.6670 11 1 4.8994 3.5260 -3.6676 12 6 2.1388 -1.1672 0.0005 13 8 3.3512 -1.1694 0.0967 14 6 1.4068 -2.4406 -0.1153 15 6 0.3605 -2.7340 0.7586 16 6 -0.3228 -3.9294 0.6450 17 6 0.0147 -4.8499 -0.3300 18 17 -0.8621 -6.3435 -0.4493 19 6 1.0533 -4.5847 -1.2147 20 8 1.5945 -5.2740 -2.2402 21 6 2.6010 -4.5840 -2.8014 22 6 2.7686 -3.4135 -2.1651 23 6 1.7556 -3.3738 -1.1099 24 1 -0.3634 0.5960 0.8371 25 1 -0.3634 0.4270 -0.9348 26 1 -0.3634 -1.0231 0.0975 27 1 1.6083 2.0284 0.5138 28 1 3.1498 1.1384 0.5139 29 1 4.0301 4.4439 -0.8504 30 1 0.0840 -2.0256 1.5254 31 1 -1.1314 -4.1478 1.3268 32 1 3.1920 -4.9230 -3.6395 33 1 3.5020 -2.6529 -2.3890 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142404372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:53 Heat of formation + Delta-G solvation = -20.570024 kcal Electronic energy + Delta-G solvation = -20698.527885 eV Core-core repulsion = 17330.378344 eV Total energy + Delta-G solvation = -3368.149541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.63113 -40.97958 -38.84526 -37.48928 -36.71071 -34.77852 -33.77426 -31.96823 -30.69511 -29.54141 -27.54979 -25.74939 -24.41641 -23.58794 -22.79957 -20.48934 -18.79041 -18.70176 -18.58301 -17.65345 -17.33354 -17.14234 -16.96781 -16.29794 -16.08744 -15.17851 -14.81183 -14.42507 -14.32244 -14.08365 -13.93509 -13.81923 -13.54600 -13.28767 -13.08914 -13.06831 -12.82901 -12.67191 -12.36023 -12.25686 -12.06396 -11.72408 -11.10489 -10.84507 -10.67299 -9.81536 -9.56335 -9.25320 -8.25718 -6.40529 -0.63133 0.02729 0.87839 1.21832 1.35090 1.36907 1.48511 1.56012 1.64784 2.11855 2.37511 2.47751 3.04238 3.35048 3.44863 3.69461 3.74111 4.03122 4.29515 4.33110 4.34147 4.55408 4.65439 4.78225 4.82703 4.90807 4.98057 5.06833 5.18479 5.22816 5.30766 5.49628 5.76168 5.86723 6.01476 6.58687 6.68307 7.17574 7.33753 8.81960 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.004321 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.624878 B = 6477.804195 C = 7117.579284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.596 5.596 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.268 1.268 11 H -0.279 1.279 12 C 0.544 3.456 13 O -0.586 6.586 14 C -0.088 4.088 15 C -0.085 4.085 16 C -0.074 4.074 17 C -0.011 4.011 18 Cl -0.042 7.042 19 C 0.040 3.960 20 O -0.186 6.186 21 C 0.045 3.955 22 C -0.241 4.241 23 C -0.102 4.102 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.031 0.969 28 H 0.003 0.997 29 H 0.268 0.732 30 H 0.173 0.827 31 H 0.194 0.806 32 H 0.263 0.737 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.611 -18.437 -0.336 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.326 5.326 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.068 0.932 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.193 1.193 11 H -0.205 1.205 12 C 0.333 3.667 13 O -0.468 6.468 14 C -0.092 4.092 15 C -0.104 4.104 16 C -0.092 4.092 17 C -0.038 4.038 18 Cl -0.012 7.012 19 C -0.008 4.008 20 O -0.086 6.086 21 C -0.019 4.019 22 C -0.260 4.260 23 C -0.104 4.104 24 H 0.101 0.899 25 H 0.073 0.927 26 H 0.125 0.875 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.077 0.923 30 H 0.191 0.809 31 H 0.212 0.788 32 H 0.278 0.722 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.106 -18.624 -0.323 21.687 hybrid contribution 0.869 0.962 -0.821 1.534 sum -10.237 -17.663 -1.144 20.447 Atomic orbital electron populations 1.22340 0.77846 1.04860 1.02973 1.48080 1.08544 1.06020 1.69956 1.18849 0.91340 0.79783 0.96341 1.21675 1.37154 1.06742 0.92844 0.93169 1.25828 0.94746 0.96265 1.02011 1.70049 1.38731 1.14798 1.32958 0.85370 0.77993 0.78446 0.79034 1.19290 1.19261 1.20524 1.18606 0.86859 0.84490 0.76766 1.90739 1.15943 1.87897 1.52200 1.19504 0.98220 0.93547 0.97919 1.21484 0.92501 0.97932 0.98467 1.21173 1.00914 0.90578 0.96498 1.20029 0.94361 0.91867 0.97570 1.98387 1.74248 1.30939 1.97669 1.19180 0.97777 0.91218 0.92603 1.84068 1.42408 1.43297 1.38873 1.24883 0.88606 0.90003 0.98412 1.22688 1.02895 1.01509 0.98953 1.19888 0.98069 0.94376 0.98091 0.89912 0.92742 0.87489 0.95063 0.97892 0.92261 0.80950 0.78844 0.72162 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.89 10.04 127.77 1.28 3.18 16 2 N -0.60 -26.13 2.86 -855.16 -2.44 -28.57 16 3 C 0.26 14.05 5.25 85.63 0.45 14.50 16 4 C -0.55 -31.77 9.39 25.60 0.24 -31.53 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.62 5.46 84.66 0.46 1.09 16 7 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 8 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 C 0.54 24.31 7.10 86.64 0.61 24.93 16 13 O -0.59 -32.05 16.63 -4.10 -0.07 -32.11 16 14 C -0.09 -3.01 5.06 -19.97 -0.10 -3.11 16 15 C -0.09 -1.98 7.34 22.54 0.17 -1.81 16 16 C -0.07 -1.32 9.77 22.26 0.22 -1.11 16 17 C -0.01 -0.24 6.33 22.46 0.14 -0.10 16 18 Cl -0.04 -0.77 28.95 -2.72 -0.08 -0.85 16 19 C 0.04 1.11 7.19 22.97 0.17 1.28 16 20 O -0.19 -4.68 10.58 -8.50 -0.09 -4.77 16 21 C 0.05 1.01 11.97 66.92 0.80 1.81 16 22 C -0.24 -7.67 11.03 23.47 0.26 -7.41 16 23 C -0.10 -3.41 6.17 -20.03 -0.12 -3.53 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.11 2.55 3.93 -2.38 -0.01 2.54 16 27 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 28 H 0.00 0.19 7.35 -2.39 -0.02 0.17 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.17 3.10 7.10 -2.91 -0.02 3.08 16 31 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.26 2.87 8.06 -2.91 -0.02 2.85 16 33 H 0.14 5.13 8.06 -2.91 -0.02 5.11 16 Total: -1.00 -78.32 308.28 5.36 -72.96 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.15 Total: 3.80 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 4.57 Total: -1.82 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.16 Total: -84.09 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.16 Total: -36.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -78.32 5.36 -72.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142404372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.392 kcal (2) G-P(sol) polarization free energy of solvation -78.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds