Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00290 * 2 1 4 4 H 1.48495 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46836 * 299.99738 * 3 2 1 6 6 H 1.48504 * 109.46971 * 59.99414 * 3 2 1 7 7 C 1.37878 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47273 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00042 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99958 * 179.97438 * 10 9 7 13 13 C 1.39802 * 120.00252 * 184.65901 * 12 10 9 14 14 C 1.39033 * 120.41099 * 144.98327 * 13 12 10 15 15 C 1.37291 * 120.93233 * 180.02562 * 14 13 12 16 16 C 1.40970 * 120.71463 * 359.97438 * 15 14 13 17 17 C 1.40184 * 117.01730 * 359.97438 * 16 15 14 18 18 C 1.36489 * 122.41112 * 0.02562 * 17 16 15 19 19 S 1.77408 * 103.75458 * 179.97438 * 17 16 15 20 20 O 1.42100 * 107.72513 * 111.83280 * 19 17 16 21 21 O 1.42098 * 107.72564 * 248.12238 * 19 17 16 22 22 C 1.78088 * 98.65970 * 359.83264 * 19 17 16 23 23 C 1.32212 * 103.92888 * 0.29133 * 22 19 17 24 24 H 0.97004 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47257 * 59.99992 * 9 7 2 26 26 H 1.08999 * 109.47421 * 300.00067 * 9 7 2 27 27 H 0.97005 * 119.99998 * 4.66480 * 12 10 9 28 28 H 1.07995 * 119.53262 * 0.03049 * 14 13 12 29 29 H 1.08004 * 119.64281 * 179.97438 * 15 14 13 30 30 H 1.07994 * 120.12395 * 179.97438 * 18 17 16 31 31 H 1.07996 * 128.03367 * 180.20087 * 22 19 17 32 32 H 1.08005 * 120.35713 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4228 -3.4230 0.0001 12 7 1.7810 -4.9153 0.0011 13 6 2.6857 -5.9766 0.0994 14 6 2.3437 -7.1307 0.7952 15 6 3.2240 -8.1791 0.8990 16 6 4.4986 -8.1110 0.3007 17 6 4.8137 -6.9353 -0.3947 18 6 3.9408 -5.8912 -0.4997 19 16 6.4602 -7.2247 -0.9884 20 8 6.3962 -7.3388 -2.4033 21 8 7.3314 -6.3415 -0.2954 22 6 6.7036 -8.8569 -0.3189 23 6 5.5667 -9.1186 0.3031 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 0.8299 -5.0935 -0.0669 28 1 1.3719 -7.2034 1.2606 29 1 2.9368 -9.0657 1.4449 30 1 4.2223 -5.0021 -1.0443 31 1 7.5766 -9.4872 -0.4029 32 1 5.4272 -10.0610 0.8118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = -41.831542 kcal Electronic energy + Delta-G solvation = -20221.344175 eV Core-core repulsion = 16854.316371 eV Total energy + Delta-G solvation = -3367.027804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48620 -38.78777 -37.22624 -36.01910 -35.81922 -33.67221 -33.10194 -31.39892 -29.80788 -28.29254 -24.39241 -23.98404 -22.90600 -21.32221 -20.08687 -19.29841 -17.90245 -17.41304 -16.58234 -16.09030 -16.00049 -15.85036 -15.18393 -15.04301 -14.62862 -14.48962 -14.11957 -13.80493 -13.36462 -13.09848 -12.79810 -12.42127 -12.26392 -12.21418 -12.09774 -11.67845 -11.26179 -10.95934 -10.86265 -10.77802 -10.64314 -10.11066 -10.03454 -9.59312 -9.41883 -9.02974 -8.56174 -8.10983 -6.18707 -4.19653 -0.11581 0.02883 0.91147 1.64860 2.74664 3.08296 3.20718 3.28048 3.35188 3.36663 3.46134 3.53250 3.86407 4.26455 4.39535 4.71841 4.75035 4.85383 5.00097 5.18079 5.20472 5.36155 5.40336 5.45001 5.76547 5.87414 5.92542 6.07933 6.21606 6.80790 6.94595 7.08390 7.58067 7.84622 8.11127 8.71682 8.91763 9.46717 10.93369 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.003856 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.731363 B = 7259.095883 C = 8109.344976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.008 3.992 10 C 0.513 3.487 11 O -0.514 6.514 12 N -0.687 5.687 13 C 0.184 3.816 14 C -0.126 4.126 15 C -0.050 4.050 16 C -0.113 4.113 17 C -0.591 4.591 18 C -0.005 4.005 19 S 2.542 3.458 20 O -0.926 6.926 21 O -0.921 6.921 22 C -0.664 4.664 23 C -0.002 4.002 24 H 0.263 0.737 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.414 0.586 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.196 0.804 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.320 -20.721 1.399 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.553 4.553 8 H 0.096 0.904 9 C -0.031 4.031 10 C 0.305 3.695 11 O -0.387 6.387 12 N -0.332 5.332 13 C 0.085 3.915 14 C -0.147 4.147 15 C -0.069 4.069 16 C -0.116 4.116 17 C -0.678 4.678 18 C -0.027 4.027 19 S 2.720 3.280 20 O -0.923 6.923 21 O -0.918 6.918 22 C -0.772 4.772 23 C -0.021 4.021 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.251 0.749 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.175 0.825 31 H 0.214 0.786 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.555 -19.742 0.893 20.528 hybrid contribution -0.935 -0.048 0.760 1.206 sum 4.620 -19.789 1.653 20.388 Atomic orbital electron populations 1.69952 1.06095 1.27134 1.50622 1.24997 0.94936 0.99644 0.94817 0.86340 0.80399 0.82662 0.77578 1.19317 1.20871 1.20911 1.21169 0.94387 0.88806 1.50972 0.90379 1.19314 0.93881 0.89797 1.00077 1.22588 0.91743 0.82741 0.72471 1.90583 1.17854 1.83896 1.46399 1.44311 1.09953 1.05157 1.73814 1.18281 0.91329 0.88518 0.93359 1.20950 1.01248 0.93495 0.99011 1.20892 0.90926 0.98307 0.96766 1.19466 0.96319 0.93023 1.02754 1.30308 1.23370 1.00471 1.13642 1.20226 0.91243 0.96603 0.94581 1.03996 0.74028 0.75514 0.74511 1.93631 1.85950 1.86192 1.26568 1.93652 1.61801 1.62194 1.74196 1.32988 1.04890 1.25200 1.14130 1.21548 0.90065 0.98562 0.91968 0.92749 0.92725 0.92760 0.74893 0.84165 0.84560 0.82502 0.78639 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 13.29 55.43 0.74 -24.52 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.19 8.92 -34.44 -0.31 -14.50 16 8 H 0.08 2.26 6.75 -52.48 -0.35 1.90 16 9 C 0.01 0.20 5.46 -29.04 -0.16 0.04 16 10 C 0.51 10.59 7.68 -10.98 -0.08 10.50 16 11 O -0.51 -12.31 12.92 5.55 0.07 -12.24 16 12 N -0.69 -10.47 5.34 -9.74 -0.05 -10.52 16 13 C 0.18 2.68 6.32 -83.52 -0.53 2.15 16 14 C -0.13 -1.36 9.89 -39.63 -0.39 -1.75 16 15 C -0.05 -0.47 10.06 -38.89 -0.39 -0.87 16 16 C -0.11 -1.27 6.04 -104.66 -0.63 -1.90 16 17 C -0.59 -8.39 6.52 -39.48 -0.26 -8.64 16 18 C -0.01 -0.09 8.67 -39.80 -0.35 -0.43 16 19 S 2.54 33.81 6.00 -107.50 -0.64 33.17 16 20 O -0.93 -14.44 18.02 -56.97 -1.03 -15.47 16 21 O -0.92 -15.27 18.01 -56.97 -1.03 -16.29 16 22 C -0.66 -6.11 11.53 28.81 0.33 -5.78 16 23 C 0.00 -0.02 10.13 -38.03 -0.39 -0.40 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.41 4.79 8.83 -40.82 -0.36 4.43 16 28 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 30 H 0.16 2.85 6.27 -52.49 -0.33 2.52 16 31 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 LS Contribution 299.78 15.07 4.52 4.52 Total: -1.00 -35.73 299.78 -8.41 -44.14 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -2.72 Total: 0.80 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -3.25 Total: -20.09 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.68 Total: -35.04 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.98 Total: -44.00 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 33.81 SS G_CDS: -0.64 Total: 33.17 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.73 -8.41 -44.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.306 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds