Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00290 * 2 1 4 4 H 1.48495 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46836 * 299.99738 * 3 2 1 6 6 H 1.48504 * 109.46971 * 59.99414 * 3 2 1 7 7 C 1.37878 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99965 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47273 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00042 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99958 * 179.97438 * 10 9 7 13 13 C 1.39802 * 120.00252 * 184.65901 * 12 10 9 14 14 C 1.39033 * 120.41099 * 144.98327 * 13 12 10 15 15 C 1.37291 * 120.93233 * 180.02562 * 14 13 12 16 16 C 1.40970 * 120.71463 * 359.97438 * 15 14 13 17 17 C 1.40184 * 117.01730 * 359.97438 * 16 15 14 18 18 C 1.36489 * 122.41112 * 0.02562 * 17 16 15 19 19 S 1.77408 * 103.75458 * 179.97438 * 17 16 15 20 20 O 1.42100 * 107.72513 * 111.83280 * 19 17 16 21 21 O 1.42098 * 107.72564 * 248.12238 * 19 17 16 22 22 C 1.78088 * 98.65970 * 359.83264 * 19 17 16 23 23 C 1.32212 * 103.92888 * 0.29133 * 22 19 17 24 24 H 0.97004 * 119.99792 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47257 * 59.99992 * 9 7 2 26 26 H 1.08999 * 109.47421 * 300.00067 * 9 7 2 27 27 H 0.97005 * 119.99998 * 4.66480 * 12 10 9 28 28 H 1.07995 * 119.53262 * 0.03049 * 14 13 12 29 29 H 1.08004 * 119.64281 * 179.97438 * 15 14 13 30 30 H 1.07994 * 120.12395 * 179.97438 * 18 17 16 31 31 H 1.07996 * 128.03367 * 180.20087 * 22 19 17 32 32 H 1.08005 * 120.35713 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4228 -3.4230 0.0001 12 7 1.7810 -4.9153 0.0011 13 6 2.6857 -5.9766 0.0994 14 6 2.3437 -7.1307 0.7952 15 6 3.2240 -8.1791 0.8990 16 6 4.4986 -8.1110 0.3007 17 6 4.8137 -6.9353 -0.3947 18 6 3.9408 -5.8912 -0.4997 19 16 6.4602 -7.2247 -0.9884 20 8 6.3962 -7.3388 -2.4033 21 8 7.3314 -6.3415 -0.2954 22 6 6.7036 -8.8569 -0.3189 23 6 5.5667 -9.1186 0.3031 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 0.8299 -5.0935 -0.0669 28 1 1.3719 -7.2034 1.2606 29 1 2.9368 -9.0657 1.4449 30 1 4.2223 -5.0021 -1.0443 31 1 7.5766 -9.4872 -0.4029 32 1 5.4272 -10.0610 0.8118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = -70.091390 kcal Electronic energy + Delta-G solvation = -20222.569614 eV Core-core repulsion = 16854.316371 eV Total energy + Delta-G solvation = -3368.253242 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69421 -40.05929 -38.37481 -37.15750 -36.95736 -35.18702 -34.83158 -32.36150 -31.43826 -29.63252 -26.10208 -24.98288 -24.17491 -22.22321 -21.55824 -20.37010 -19.06879 -18.67821 -18.21117 -17.65494 -17.15041 -16.97498 -16.55043 -16.43214 -16.09190 -15.62127 -15.14440 -14.93856 -14.61392 -14.42495 -14.24473 -13.64809 -13.45678 -13.45011 -13.36304 -13.27237 -12.85690 -12.67772 -12.39892 -12.12079 -11.90792 -11.57474 -11.49621 -11.19531 -10.72896 -10.66325 -10.46665 -9.21929 -8.30580 -6.37418 -1.01769 -0.98652 -0.04313 0.75966 1.37000 1.39063 1.52876 1.63126 1.77559 1.98966 2.32547 2.40617 2.44969 3.05756 3.07862 3.38444 3.66069 3.88214 3.96570 4.13762 4.24330 4.50034 4.54171 4.62681 4.68415 4.89749 4.96863 5.01426 5.06271 5.18038 5.23775 5.65647 5.72934 5.95467 6.44618 6.75214 7.16514 7.33447 8.81346 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.003856 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.731363 B = 7259.095883 C = 8109.344976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.012 3.988 10 C 0.517 3.483 11 O -0.558 6.558 12 N -0.666 5.666 13 C 0.148 3.852 14 C -0.104 4.104 15 C -0.036 4.036 16 C -0.106 4.106 17 C -0.617 4.617 18 C -0.042 4.042 19 S 2.523 3.477 20 O -0.966 6.966 21 O -0.972 6.972 22 C -0.634 4.634 23 C 0.011 3.989 24 H 0.269 0.731 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.432 0.568 28 H 0.182 0.818 29 H 0.196 0.804 30 H 0.116 0.884 31 H 0.235 0.765 32 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -24.627 3.307 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.027 4.027 10 C 0.309 3.691 11 O -0.435 6.435 12 N -0.313 5.313 13 C 0.051 3.949 14 C -0.124 4.124 15 C -0.055 4.055 16 C -0.108 4.108 17 C -0.705 4.705 18 C -0.063 4.063 19 S 2.707 3.293 20 O -0.963 6.963 21 O -0.969 6.969 22 C -0.747 4.747 23 C -0.008 4.008 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.272 0.728 28 H 0.199 0.801 29 H 0.213 0.787 30 H 0.134 0.866 31 H 0.252 0.748 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.680 -23.646 2.769 24.263 hybrid contribution -0.661 0.975 0.186 1.192 sum 4.020 -22.671 2.955 23.213 Atomic orbital electron populations 1.70002 1.06907 1.28157 1.50883 1.25685 0.95814 1.02462 0.94359 0.85475 0.78534 0.79199 0.78325 1.20372 1.19720 1.19602 1.21376 0.93687 0.91275 1.51633 0.92828 1.19115 0.93954 0.89754 0.99890 1.21953 0.90388 0.84243 0.72546 1.90577 1.19237 1.84970 1.48737 1.43700 1.11082 1.03729 1.72784 1.18473 0.90721 0.89769 0.95887 1.21450 1.03028 0.91459 0.96511 1.21551 0.89218 0.99436 0.95262 1.20067 0.97936 0.92002 1.00836 1.30169 1.23257 1.01740 1.15340 1.20037 0.93342 0.96452 0.96493 1.04099 0.73635 0.77614 0.73928 1.93570 1.86263 1.87318 1.29160 1.93583 1.63192 1.65532 1.74579 1.32713 1.07034 1.20948 1.13972 1.21939 0.88236 0.99539 0.91124 0.92240 0.92877 0.92665 0.72753 0.80087 0.78703 0.86582 0.74836 0.77882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.29 21.45 0.28 -51.94 16 2 C 0.02 0.91 5.46 84.66 0.46 1.37 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.10 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -31.22 8.92 25.60 0.23 -30.99 16 8 H 0.05 3.30 6.75 -2.91 -0.02 3.28 16 9 C 0.01 0.59 5.46 29.10 0.16 0.75 16 10 C 0.52 22.61 7.68 87.66 0.67 23.29 16 11 O -0.56 -29.01 12.92 -3.05 -0.04 -29.05 16 12 N -0.67 -20.66 5.34 -303.12 -1.62 -22.28 16 13 C 0.15 4.30 6.32 38.33 0.24 4.54 16 14 C -0.10 -1.83 9.89 22.24 0.22 -1.61 16 15 C -0.04 -0.48 10.06 22.72 0.23 -0.25 16 16 C -0.11 -1.99 6.04 -19.89 -0.12 -2.11 16 17 C -0.62 -17.83 6.52 22.33 0.15 -17.68 16 18 C -0.04 -1.46 8.67 22.13 0.19 -1.27 16 19 S 2.52 69.84 6.00 -56.49 -0.34 69.50 16 20 O -0.97 -32.22 18.02 -128.19 -2.31 -34.53 16 21 O -0.97 -34.69 18.01 -128.19 -2.31 -37.00 16 22 C -0.63 -9.29 11.53 66.79 0.77 -8.52 16 23 C 0.01 0.13 10.13 23.49 0.24 0.37 16 24 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.05 2.57 8.14 -2.38 -0.02 2.55 16 26 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.43 9.69 8.83 -92.70 -0.82 8.88 16 28 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.20 0.45 8.06 -2.91 -0.02 0.43 16 30 H 0.12 4.88 6.27 -2.91 -0.02 4.86 16 31 H 0.24 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.20 0.26 8.06 -2.91 -0.02 0.23 16 Total: -1.00 -85.75 299.78 -0.50 -86.25 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.36 Total: 4.06 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 3.44 Total: -32.12 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.33 Total: -74.22 kcal Atomic # 8 Polarization: -95.92 SS G_CDS: -4.66 Total: -100.58 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 69.84 SS G_CDS: -0.34 Total: 69.50 kcal Total: -85.75 -0.50 -86.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.161 kcal (2) G-P(sol) polarization free energy of solvation -85.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds