Wall clock time and date at job start Tue Mar 31 2020 06:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36942 * 120.00235 * 2 1 4 4 H 1.08002 * 120.00250 * 202.63383 * 3 2 1 5 5 C 1.38811 * 119.99818 * 22.63333 * 3 2 1 6 6 N 1.31615 * 119.99869 * 8.38042 * 5 3 2 7 7 Si 1.86800 * 119.99910 * 188.37909 * 5 3 2 8 8 H 1.48503 * 109.47009 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47016 * 119.99716 * 7 5 3 10 10 H 1.48496 * 109.47556 * 239.99804 * 7 5 3 11 11 C 1.46505 * 120.00152 * 179.97438 * 2 1 3 12 12 C 1.50704 * 109.47120 * 276.11723 * 11 2 1 13 13 C 1.38369 * 120.00725 * 287.73726 * 12 11 2 14 14 Cl 1.73598 * 120.01164 * 0.02562 * 13 12 11 15 15 C 1.38324 * 119.97497 * 179.74571 * 13 12 11 16 16 C 1.38246 * 119.98539 * 0.55423 * 15 13 12 17 17 C 1.38217 * 120.00909 * 359.46999 * 16 15 13 18 18 C 1.38193 * 120.00335 * 107.75989 * 12 11 2 19 19 C 1.50696 * 119.99539 * 359.97438 * 18 12 11 20 20 F 1.39904 * 109.47220 * 169.72308 * 19 18 12 21 21 F 1.39903 * 109.47236 * 289.71758 * 19 18 12 22 22 F 1.39902 * 109.47364 * 49.71973 * 19 18 12 23 23 H 1.08993 * 109.47478 * 174.64890 * 1 2 3 24 24 H 1.09000 * 109.47469 * 294.65214 * 1 2 3 25 25 H 1.09001 * 109.47437 * 54.64792 * 1 2 3 26 26 H 0.97009 * 119.99766 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.47299 * 156.11493 * 11 2 1 28 28 H 1.09001 * 109.46460 * 36.11508 * 11 2 1 29 29 H 1.08002 * 120.01273 * 180.27364 * 15 13 12 30 30 H 1.07991 * 119.99191 * 179.74243 * 16 15 13 31 31 H 1.07998 * 119.98805 * 180.25295 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1673 1.2219 -0.3599 5 6 1.5358 2.3418 0.4626 6 7 0.3612 2.2722 1.0522 7 14 2.3769 3.9959 0.2484 8 1 3.6784 3.8038 -0.4405 9 1 1.5134 4.8884 -0.5659 10 1 2.6072 4.6104 1.5804 11 6 2.1975 -1.2688 0.0006 12 6 2.3175 -1.7789 1.4136 13 6 3.1721 -1.1540 2.3046 14 17 4.1057 0.2181 1.7954 15 6 3.2778 -1.6195 3.6028 16 6 2.5383 -2.7158 4.0061 17 6 1.6853 -3.3398 3.1155 18 6 1.5745 -2.8711 1.8194 19 6 0.6438 -3.5517 0.8491 20 9 0.1870 -4.7517 1.4047 21 9 -0.4464 -2.7158 0.5843 22 9 1.3264 -3.8194 -0.3423 23 1 -0.3634 -1.0231 -0.0958 24 1 -0.3634 0.4286 0.9340 25 1 -0.3634 0.5946 -0.8382 26 1 -0.0680 3.0800 1.3752 27 1 3.1929 -1.1138 -0.4156 28 1 1.6601 -1.9987 -0.6049 29 1 3.9413 -1.1295 4.3001 30 1 2.6239 -3.0818 5.0185 31 1 1.1047 -4.1936 3.4321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143288663.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:35 Heat of formation + Delta-G solvation = -93.345096 kcal Electronic energy + Delta-G solvation = -22486.336068 eV Core-core repulsion = 18573.174023 eV Total energy + Delta-G solvation = -3913.162046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.94603 -47.47135 -47.31687 -39.19455 -35.77711 -35.49525 -32.33665 -31.26867 -30.09507 -26.46115 -25.91914 -25.23224 -22.37375 -21.60121 -20.49398 -18.23919 -18.14432 -17.93603 -16.79256 -15.85212 -15.28003 -14.90225 -14.72788 -14.34022 -14.16453 -13.91583 -13.74938 -13.52966 -13.46741 -13.34028 -12.98508 -12.56159 -12.44701 -11.95214 -11.46812 -11.17554 -11.03083 -10.95764 -10.76608 -10.53424 -10.34777 -10.09178 -9.84410 -9.61866 -8.82053 -8.58615 -8.19463 -6.81629 -5.62132 -3.16116 1.19439 1.50982 2.76432 3.04127 3.35493 3.42810 3.44014 3.71116 4.04552 4.37166 4.48548 4.74393 5.06434 5.13342 5.25578 5.47079 5.60374 5.67269 5.78446 6.04586 6.05644 6.40342 6.46359 6.56084 6.71791 6.92338 6.94026 7.40512 7.79657 7.96166 8.41710 9.21993 9.81364 10.28206 11.29000 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.007522 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.794670 B = 3721.730227 C = 4525.825647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.577 5.577 3 C -0.229 4.229 4 H 0.074 0.926 5 C 0.005 3.995 6 N -0.900 5.900 7 Si 0.896 3.104 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.152 3.848 12 C -0.031 4.031 13 C -0.017 4.017 14 Cl -0.037 7.037 15 C -0.089 4.089 16 C -0.134 4.134 17 C -0.077 4.077 18 C -0.186 4.186 19 C 0.511 3.489 20 F -0.185 7.185 21 F -0.163 7.163 22 F -0.175 7.175 23 H 0.026 0.974 24 H 0.075 0.925 25 H 0.017 0.983 26 H 0.251 0.749 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -11.576 3.831 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.296 5.296 3 C -0.359 4.359 4 H 0.092 0.908 5 C -0.194 4.194 6 N -0.545 5.545 7 Si 0.726 3.274 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.025 3.975 12 C -0.037 4.037 13 C -0.045 4.045 14 Cl -0.007 7.007 15 C -0.109 4.109 16 C -0.153 4.153 17 C -0.095 4.095 18 C -0.189 4.189 19 C 0.457 3.543 20 F -0.166 7.166 21 F -0.144 7.144 22 F -0.156 7.156 23 H 0.044 0.956 24 H 0.093 0.907 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.378 -11.246 3.734 12.322 hybrid contribution 0.205 1.080 0.039 1.100 sum 3.583 -10.166 3.773 11.420 Atomic orbital electron populations 1.21640 0.81719 0.96429 1.02414 1.44234 1.02373 0.99810 1.83157 1.19330 0.98101 0.84631 1.33823 0.90812 1.25033 0.97207 0.98314 0.98806 1.69966 1.15864 1.26675 1.41960 0.86285 0.79034 0.84614 0.77451 1.20247 1.21564 1.21610 1.20590 0.98592 0.89811 0.88519 1.20940 0.90677 0.89943 1.02126 1.20644 0.97411 0.92533 0.93914 1.98409 1.71143 1.40518 1.90661 1.21208 0.99189 0.96212 0.94243 1.20830 0.98145 0.96726 0.99642 1.20871 0.97639 0.99273 0.91705 1.19613 1.03435 1.00683 0.95158 1.18312 0.79979 0.76163 0.79865 1.93123 1.90031 1.48178 1.85307 1.93182 1.56708 1.70310 1.94172 1.93117 1.79688 1.93699 1.49090 0.95581 0.90712 0.96487 0.93832 0.91215 0.91870 0.85120 0.85087 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.03 9.28 59.84 0.56 3.59 16 2 N -0.58 -14.23 2.91 -182.50 -0.53 -14.76 16 3 C -0.23 -5.99 7.01 -15.06 -0.11 -6.10 16 4 H 0.07 1.91 7.01 -52.49 -0.37 1.54 16 5 C 0.00 0.12 5.33 -17.43 -0.09 0.03 16 6 N -0.90 -25.69 10.28 55.49 0.57 -25.12 16 7 Si 0.90 21.73 29.56 -169.99 -5.03 16.71 16 8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.15 3.18 4.83 -5.19 -0.03 3.15 16 12 C -0.03 -0.59 5.42 -104.59 -0.57 -1.16 16 13 C -0.02 -0.32 6.31 -39.50 -0.25 -0.57 16 14 Cl -0.04 -0.73 24.24 -51.86 -1.26 -1.98 16 15 C -0.09 -1.39 9.83 -39.55 -0.39 -1.78 16 16 C -0.13 -1.82 10.05 -39.59 -0.40 -2.22 16 17 C -0.08 -1.11 9.42 -39.58 -0.37 -1.48 16 18 C -0.19 -3.19 5.40 -104.63 -0.56 -3.75 16 19 C 0.51 8.43 2.78 36.00 0.10 8.53 16 20 F -0.18 -2.72 16.04 2.25 0.04 -2.69 16 21 F -0.16 -2.97 13.65 2.25 0.03 -2.94 16 22 F -0.17 -2.86 14.68 2.25 0.03 -2.83 16 23 H 0.03 0.58 4.20 -51.93 -0.22 0.36 16 24 H 0.07 2.08 6.03 -51.93 -0.31 1.76 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.07 1.43 7.53 -51.93 -0.39 1.03 16 28 H 0.06 1.25 4.54 -51.93 -0.24 1.02 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.13 1.57 7.21 -52.49 -0.38 1.20 16 LS Contribution 277.44 15.07 4.18 4.18 Total: -1.00 -28.52 277.44 -6.38 -34.90 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -2.31 Total: -3.71 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.11 Total: -1.76 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.04 Total: -39.88 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.10 Total: -8.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.26 Total: -1.98 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.52 -6.38 -34.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143288663.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.443 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds