Wall clock time and date at job start Tue Mar 31 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36942 * 120.00235 * 2 1 4 4 H 1.08002 * 120.00250 * 202.63383 * 3 2 1 5 5 C 1.38811 * 119.99818 * 22.63333 * 3 2 1 6 6 N 1.31615 * 119.99869 * 8.38042 * 5 3 2 7 7 Si 1.86800 * 119.99910 * 188.37909 * 5 3 2 8 8 H 1.48503 * 109.47009 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47016 * 119.99716 * 7 5 3 10 10 H 1.48496 * 109.47556 * 239.99804 * 7 5 3 11 11 C 1.46505 * 120.00152 * 179.97438 * 2 1 3 12 12 C 1.50704 * 109.47120 * 276.11723 * 11 2 1 13 13 C 1.38369 * 120.00725 * 287.73726 * 12 11 2 14 14 Cl 1.73598 * 120.01164 * 0.02562 * 13 12 11 15 15 C 1.38324 * 119.97497 * 179.74571 * 13 12 11 16 16 C 1.38246 * 119.98539 * 0.55423 * 15 13 12 17 17 C 1.38217 * 120.00909 * 359.46999 * 16 15 13 18 18 C 1.38193 * 120.00335 * 107.75989 * 12 11 2 19 19 C 1.50696 * 119.99539 * 359.97438 * 18 12 11 20 20 F 1.39904 * 109.47220 * 169.72308 * 19 18 12 21 21 F 1.39903 * 109.47236 * 289.71758 * 19 18 12 22 22 F 1.39902 * 109.47364 * 49.71973 * 19 18 12 23 23 H 1.08993 * 109.47478 * 174.64890 * 1 2 3 24 24 H 1.09000 * 109.47469 * 294.65214 * 1 2 3 25 25 H 1.09001 * 109.47437 * 54.64792 * 1 2 3 26 26 H 0.97009 * 119.99766 * 180.02562 * 6 5 3 27 27 H 1.09004 * 109.47299 * 156.11493 * 11 2 1 28 28 H 1.09001 * 109.46460 * 36.11508 * 11 2 1 29 29 H 1.08002 * 120.01273 * 180.27364 * 15 13 12 30 30 H 1.07991 * 119.99191 * 179.74243 * 16 15 13 31 31 H 1.07998 * 119.98805 * 180.25295 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1673 1.2219 -0.3599 5 6 1.5358 2.3418 0.4626 6 7 0.3612 2.2722 1.0522 7 14 2.3769 3.9959 0.2484 8 1 3.6784 3.8038 -0.4405 9 1 1.5134 4.8884 -0.5659 10 1 2.6072 4.6104 1.5804 11 6 2.1975 -1.2688 0.0006 12 6 2.3175 -1.7789 1.4136 13 6 3.1721 -1.1540 2.3046 14 17 4.1057 0.2181 1.7954 15 6 3.2778 -1.6195 3.6028 16 6 2.5383 -2.7158 4.0061 17 6 1.6853 -3.3398 3.1155 18 6 1.5745 -2.8711 1.8194 19 6 0.6438 -3.5517 0.8491 20 9 0.1870 -4.7517 1.4047 21 9 -0.4464 -2.7158 0.5843 22 9 1.3264 -3.8194 -0.3423 23 1 -0.3634 -1.0231 -0.0958 24 1 -0.3634 0.4286 0.9340 25 1 -0.3634 0.5946 -0.8382 26 1 -0.0680 3.0800 1.3752 27 1 3.1929 -1.1138 -0.4156 28 1 1.6601 -1.9987 -0.6049 29 1 3.9413 -1.1295 4.3001 30 1 2.6239 -3.0818 5.0185 31 1 1.1047 -4.1936 3.4321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143288663.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:34 Heat of formation + Delta-G solvation = -108.315883 kcal Electronic energy + Delta-G solvation = -22486.985250 eV Core-core repulsion = 18573.174023 eV Total energy + Delta-G solvation = -3913.811228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.26948 -48.74279 -48.69162 -40.53360 -37.41608 -37.10472 -33.96309 -32.72274 -31.69578 -28.12281 -27.74431 -26.68651 -23.96127 -22.96447 -22.09412 -19.59192 -19.45965 -19.26503 -18.71550 -17.26773 -16.79314 -16.47405 -16.05556 -15.90028 -15.59413 -15.34841 -15.17586 -14.95640 -14.87088 -14.83183 -14.65129 -14.03581 -13.91351 -13.52606 -13.05784 -12.88434 -12.68218 -12.55241 -12.35888 -12.28924 -12.02586 -11.88945 -11.68987 -11.41211 -10.54514 -10.10991 -9.58293 -8.77503 -7.62458 -5.21474 -0.08362 0.21668 1.36823 1.42298 1.45486 1.52574 1.70394 2.41279 2.55644 2.72559 3.07700 3.36709 3.44850 3.75073 3.84663 4.00320 4.02710 4.35803 4.54492 4.58051 4.71666 4.89119 5.00452 5.16783 5.25077 5.30306 5.37280 5.72025 5.73798 5.92374 6.42331 7.22144 7.88662 8.31944 9.28469 Molecular weight = 293.05amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.007522 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.794670 B = 3721.730227 C = 4525.825647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.140 3.860 2 N -0.596 5.596 3 C -0.218 4.218 4 H 0.073 0.927 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.942 3.058 8 H -0.268 1.268 9 H -0.295 1.295 10 H -0.294 1.294 11 C 0.156 3.844 12 C -0.055 4.055 13 C -0.041 4.041 14 Cl -0.057 7.057 15 C -0.089 4.089 16 C -0.110 4.110 17 C -0.073 4.073 18 C -0.191 4.191 19 C 0.513 3.487 20 F -0.170 7.170 21 F -0.176 7.176 22 F -0.175 7.175 23 H 0.049 0.951 24 H 0.046 0.954 25 H -0.010 1.010 26 H 0.242 0.758 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -13.787 5.611 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.316 5.316 3 C -0.349 4.349 4 H 0.091 0.909 5 C -0.239 4.239 6 N -0.583 5.583 7 Si 0.772 3.228 8 H -0.193 1.193 9 H -0.222 1.222 10 H -0.221 1.221 11 C 0.030 3.970 12 C -0.059 4.059 13 C -0.068 4.068 14 Cl -0.028 7.028 15 C -0.108 4.108 16 C -0.129 4.129 17 C -0.091 4.091 18 C -0.194 4.194 19 C 0.459 3.541 20 F -0.151 7.151 21 F -0.157 7.157 22 F -0.157 7.157 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.009 0.991 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.197 0.803 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.203 -13.517 5.524 15.195 hybrid contribution 0.047 1.448 -0.432 1.511 sum 4.250 -12.070 5.092 13.772 Atomic orbital electron populations 1.21319 0.82424 0.96930 0.99786 1.44193 1.02184 1.00737 1.84526 1.19413 0.97581 0.85482 1.32377 0.90920 1.25524 0.97904 1.00637 0.99859 1.70139 1.17280 1.26406 1.44450 0.85546 0.78494 0.81861 0.76916 1.19254 1.22213 1.22108 1.20498 0.97997 0.88465 0.90086 1.20706 0.92683 0.92011 1.00534 1.20919 0.98190 0.92286 0.95452 1.98392 1.71438 1.41894 1.91068 1.21613 0.99412 0.96600 0.93168 1.21423 0.95384 0.94687 1.01360 1.21347 0.97497 0.99837 0.90396 1.19822 1.02680 1.00323 0.96565 1.18259 0.79523 0.76455 0.79844 1.93150 1.89843 1.47142 1.85011 1.93135 1.57356 1.70928 1.94274 1.93112 1.79659 1.93659 1.49235 0.93316 0.93556 0.99115 0.94790 0.91467 0.91155 0.82727 0.80294 0.81799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.14 9.28 127.77 1.19 8.32 16 2 N -0.60 -29.77 2.91 -731.31 -2.13 -31.90 16 3 C -0.22 -11.60 7.01 84.03 0.59 -11.01 16 4 H 0.07 3.81 7.01 -2.91 -0.02 3.79 16 5 C -0.05 -2.51 5.33 84.86 0.45 -2.06 16 6 N -0.93 -55.12 10.28 21.65 0.22 -54.90 16 7 Si 0.94 45.55 29.56 68.60 2.03 47.58 16 8 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 9 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 11 C 0.16 6.47 4.83 85.63 0.41 6.89 16 12 C -0.05 -2.04 5.42 -19.84 -0.11 -2.15 16 13 C -0.04 -1.47 6.31 22.32 0.14 -1.33 16 14 Cl -0.06 -2.24 24.24 -2.72 -0.07 -2.30 16 15 C -0.09 -2.45 9.83 22.29 0.22 -2.23 16 16 C -0.11 -2.40 10.05 22.27 0.22 -2.17 16 17 C -0.07 -1.77 9.42 22.27 0.21 -1.56 16 18 C -0.19 -6.05 5.40 -19.87 -0.11 -6.16 16 19 C 0.51 15.81 2.78 71.23 0.20 16.01 16 20 F -0.17 -4.45 16.04 44.97 0.72 -3.73 16 21 F -0.18 -6.20 13.65 44.97 0.61 -5.59 16 22 F -0.18 -5.46 14.68 44.97 0.66 -4.80 16 23 H 0.05 2.20 4.20 -2.39 -0.01 2.19 16 24 H 0.05 2.66 6.03 -2.39 -0.01 2.64 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16 27 H 0.07 2.77 7.53 -2.38 -0.02 2.75 16 28 H 0.07 2.76 4.54 -2.39 -0.01 2.75 16 29 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.18 2.27 8.06 -2.92 -0.02 2.25 16 31 H 0.16 2.96 7.21 -2.91 -0.02 2.94 16 Total: -1.00 -63.14 277.44 6.66 -56.49 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: 1.19 Total: -3.39 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 3.42 Total: 2.55 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -1.91 Total: -86.80 kcal Atomic # 9 Polarization: -16.11 SS G_CDS: 2.00 Total: -14.11 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.07 Total: -2.30 kcal Total: -63.14 6.66 -56.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143288663.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.831 kcal (2) G-P(sol) polarization free energy of solvation -63.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds