Wall clock time and date at job start Tue Mar 31 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36692 * 126.45413 * 2 1 4 4 C 1.47478 * 125.93513 * 0.02668 * 3 2 1 5 5 O 1.21629 * 120.00023 * 354.32598 * 4 3 2 6 6 N 1.34773 * 120.00152 * 174.33198 * 4 3 2 7 7 C 1.46507 * 120.00285 * 354.32804 * 6 4 3 8 8 C 1.36920 * 120.00263 * 174.33149 * 6 4 3 9 9 H 1.07994 * 120.00084 * 21.06306 * 8 6 4 10 10 C 1.39009 * 120.00242 * 201.34517 * 8 6 4 11 11 N 1.31398 * 119.99739 * 14.83031 * 10 8 6 12 12 Si 1.86800 * 120.00081 * 194.84010 * 10 8 6 13 13 H 1.48501 * 109.47141 * 89.99458 * 12 10 8 14 14 H 1.48499 * 109.46715 * 209.99571 * 12 10 8 15 15 H 1.48496 * 109.46913 * 329.99613 * 12 10 8 16 16 N 1.34586 * 108.13414 * 179.75586 * 3 2 1 17 17 C 1.32250 * 109.02751 * 0.24737 * 16 3 2 18 18 C 1.41274 * 132.03078 * 180.02562 * 17 16 3 19 19 Cl 1.73600 * 120.33770 * 359.94886 * 18 17 16 20 20 C 1.36000 * 119.33179 * 179.97438 * 18 17 16 21 21 C 1.40574 * 119.71680 * 359.97438 * 20 18 17 22 22 C 1.34842 * 120.35005 * 0.02562 * 21 20 18 23 23 N 1.36185 * 126.46047 * 180.17242 * 2 1 3 24 24 H 1.09004 * 109.47028 * 90.02015 * 1 2 3 25 25 H 1.09001 * 109.46899 * 210.02012 * 1 2 3 26 26 H 1.09002 * 109.46932 * 330.02137 * 1 2 3 27 27 H 1.08999 * 109.47313 * 213.23767 * 7 6 4 28 28 H 1.09004 * 109.46613 * 333.22957 * 7 6 4 29 29 H 1.09001 * 109.47363 * 93.22393 * 7 6 4 30 30 H 0.96996 * 119.99865 * 179.97438 * 11 10 8 31 31 H 1.07992 * 120.14311 * 180.02562 * 20 18 17 32 32 H 1.07990 * 119.82108 * 180.02562 * 21 20 18 33 33 H 1.07997 * 119.66867 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3192 1.0995 0.0000 4 6 1.8731 2.5051 0.0006 5 8 0.6900 2.7677 -0.1031 6 7 2.7762 3.4988 0.1158 7 6 4.1850 3.1831 0.3649 8 6 2.3772 4.8035 0.0000 9 1 1.3419 5.0674 0.1568 10 6 3.3038 5.7874 -0.3251 11 7 4.4803 5.4498 -0.8030 12 14 2.8763 7.5896 -0.0825 13 1 3.2764 8.0137 1.2833 14 1 3.5998 8.4094 -1.0873 15 1 1.4130 7.7782 -0.2506 16 7 3.5969 0.6764 0.0054 17 6 3.6132 -0.6460 0.0035 18 6 4.6742 -1.5788 0.0075 19 17 6.3220 -1.0326 0.0157 20 6 4.3916 -2.9091 0.0045 21 6 3.0527 -3.3371 -0.0021 22 6 2.0494 -2.4362 -0.0059 23 7 2.3164 -1.0953 -0.0033 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 4.6288 3.9642 0.9822 28 1 4.2568 2.2264 0.8824 29 1 4.7174 3.1235 -0.5843 30 1 5.1267 6.1364 -1.0302 31 1 5.1925 -3.6336 0.0080 32 1 2.8264 -4.3930 -0.0041 33 1 1.0247 -2.7772 -0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155448016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:36 Heat of formation + Delta-G solvation = 68.826281 kcal Electronic energy + Delta-G solvation = -20995.976448 eV Core-core repulsion = 17663.996172 eV Total energy + Delta-G solvation = -3331.980275 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.67072 -38.43542 -37.16264 -36.40755 -34.69599 -33.59178 -31.58403 -30.96695 -29.79337 -26.67947 -26.23245 -24.95682 -23.40937 -22.51665 -21.41575 -19.05302 -17.49460 -16.88328 -16.73111 -16.23583 -16.03852 -15.15704 -15.12691 -14.37380 -13.97617 -13.76315 -13.46490 -13.03744 -12.81484 -12.51004 -12.27397 -12.12627 -12.02203 -11.78933 -11.58980 -11.21987 -11.06428 -10.95911 -10.85694 -10.35704 -10.32746 -10.21600 -9.43395 -8.95590 -8.55318 -8.43843 -7.70794 -7.53503 -6.30748 -3.81063 0.53899 1.25456 1.88834 2.60916 2.74861 3.21206 3.26515 3.32042 3.39242 4.08493 4.18431 4.42099 4.44579 4.61628 4.76477 5.06282 5.12763 5.23108 5.33949 5.51102 5.72047 5.74227 5.84130 5.89034 6.09548 6.35424 6.49569 6.67326 7.02156 7.10489 7.23897 7.53764 7.61642 7.97210 8.17781 8.53351 9.18922 9.45023 10.04125 10.69388 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.005108 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.828705 B = 5480.375017 C = 6754.533756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.010 4.010 3 C 0.052 3.948 4 C 0.500 3.500 5 O -0.592 6.592 6 N -0.410 5.410 7 C 0.108 3.892 8 C -0.305 4.305 9 H 0.105 0.895 10 C 0.032 3.968 11 N -0.862 5.862 12 Si 0.929 3.071 13 H -0.276 1.276 14 H -0.283 1.283 15 H -0.267 1.267 16 N -0.436 5.436 17 C 0.202 3.798 18 C 0.010 3.990 19 Cl -0.029 7.029 20 C -0.105 4.105 21 C -0.145 4.145 22 C 0.063 3.937 23 N -0.360 5.360 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.270 0.730 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.250 -18.035 2.184 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.125 4.125 3 C -0.081 4.081 4 C 0.288 3.712 5 O -0.479 6.479 6 N -0.125 5.125 7 C -0.036 4.036 8 C -0.434 4.434 9 H 0.122 0.878 10 C -0.173 4.173 11 N -0.499 5.499 12 Si 0.755 3.245 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.192 1.192 16 N -0.158 5.158 17 C -0.042 4.042 18 C -0.020 4.020 19 Cl 0.000 7.000 20 C -0.130 4.130 21 C -0.166 4.166 22 C -0.058 4.058 23 N -0.034 5.034 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.671 -17.120 2.070 17.258 hybrid contribution -0.276 0.255 -0.052 0.380 sum 0.394 -16.865 2.018 16.990 Atomic orbital electron populations 1.20320 0.85399 1.03715 1.03138 1.21237 0.94802 0.83655 1.12832 1.21210 0.87668 0.95471 1.03777 1.16591 0.86259 0.81683 0.86638 1.90572 1.16115 1.82627 1.58575 1.43531 1.07537 1.05130 1.56268 1.21867 0.81618 0.98528 1.01552 1.19793 0.96958 0.81263 1.45370 0.87780 1.25444 0.95580 1.00814 0.95474 1.70084 1.06848 1.34402 1.38598 0.85881 0.79017 0.81473 0.78081 1.20207 1.20872 1.19157 1.71369 1.20827 1.04367 1.19225 1.20477 0.83121 0.91337 1.09268 1.19584 0.85391 0.91357 1.05674 1.98396 1.14557 1.90625 1.96427 1.20879 0.97576 0.93265 1.01253 1.20594 0.90979 0.99965 1.05101 1.21668 1.01535 0.80644 1.02000 1.42603 1.08289 1.05552 1.46958 0.90846 0.92693 0.87480 0.92788 0.91750 0.92098 0.92006 0.83478 0.82737 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 9.67 36.01 0.35 -0.69 16 2 C -0.01 -0.18 7.06 -81.22 -0.57 -0.76 16 3 C 0.05 1.18 6.58 -83.45 -0.55 0.63 16 4 C 0.50 13.32 7.61 -12.50 -0.10 13.23 16 5 O -0.59 -16.53 14.47 5.25 0.08 -16.45 16 6 N -0.41 -11.43 3.01 -123.40 -0.37 -11.80 16 7 C 0.11 2.77 7.88 59.85 0.47 3.24 16 8 C -0.31 -8.80 9.32 -14.99 -0.14 -8.94 16 9 H 0.10 3.06 7.36 -52.49 -0.39 2.68 16 10 C 0.03 0.88 5.05 -17.45 -0.09 0.79 16 11 N -0.86 -23.87 10.73 55.50 0.60 -23.27 16 12 Si 0.93 20.95 29.58 -169.99 -5.03 15.93 16 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 16 N -0.44 -9.44 7.87 -9.33 -0.07 -9.51 16 17 C 0.20 3.63 7.62 -156.01 -1.19 2.44 16 18 C 0.01 0.14 6.35 -39.23 -0.25 -0.11 16 19 Cl -0.03 -0.41 28.98 -51.86 -1.50 -1.92 16 20 C -0.11 -1.09 9.84 -39.50 -0.39 -1.48 16 21 C -0.14 -1.26 9.98 -39.91 -0.40 -1.66 16 22 C 0.06 0.68 10.82 -16.58 -0.18 0.51 16 23 N -0.36 -5.74 2.93 -58.12 -0.17 -5.91 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.11 1.90 6.57 -51.93 -0.34 1.56 16 27 H 0.05 1.41 7.15 -51.93 -0.37 1.04 16 28 H 0.06 1.55 5.22 -51.93 -0.27 1.28 16 29 H 0.06 1.65 7.49 -51.93 -0.39 1.26 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -33.35 299.22 -8.00 -41.35 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -3.01 Total: -0.12 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -3.03 Total: 7.20 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.02 Total: -50.50 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.08 Total: -16.45 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.35 -8.00 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155448016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.178 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds