Wall clock time and date at job start Tue Mar 31 2020 07:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36692 * 126.45413 * 2 1 4 4 C 1.47478 * 125.93513 * 0.02668 * 3 2 1 5 5 O 1.21629 * 120.00023 * 354.32598 * 4 3 2 6 6 N 1.34773 * 120.00152 * 174.33198 * 4 3 2 7 7 C 1.46507 * 120.00285 * 354.32804 * 6 4 3 8 8 C 1.36920 * 120.00263 * 174.33149 * 6 4 3 9 9 H 1.07994 * 120.00084 * 21.06306 * 8 6 4 10 10 C 1.39009 * 120.00242 * 201.34517 * 8 6 4 11 11 N 1.31398 * 119.99739 * 14.83031 * 10 8 6 12 12 Si 1.86800 * 120.00081 * 194.84010 * 10 8 6 13 13 H 1.48501 * 109.47141 * 89.99458 * 12 10 8 14 14 H 1.48499 * 109.46715 * 209.99571 * 12 10 8 15 15 H 1.48496 * 109.46913 * 329.99613 * 12 10 8 16 16 N 1.34586 * 108.13414 * 179.75586 * 3 2 1 17 17 C 1.32250 * 109.02751 * 0.24737 * 16 3 2 18 18 C 1.41274 * 132.03078 * 180.02562 * 17 16 3 19 19 Cl 1.73600 * 120.33770 * 359.94886 * 18 17 16 20 20 C 1.36000 * 119.33179 * 179.97438 * 18 17 16 21 21 C 1.40574 * 119.71680 * 359.97438 * 20 18 17 22 22 C 1.34842 * 120.35005 * 0.02562 * 21 20 18 23 23 N 1.36185 * 126.46047 * 180.17242 * 2 1 3 24 24 H 1.09004 * 109.47028 * 90.02015 * 1 2 3 25 25 H 1.09001 * 109.46899 * 210.02012 * 1 2 3 26 26 H 1.09002 * 109.46932 * 330.02137 * 1 2 3 27 27 H 1.08999 * 109.47313 * 213.23767 * 7 6 4 28 28 H 1.09004 * 109.46613 * 333.22957 * 7 6 4 29 29 H 1.09001 * 109.47363 * 93.22393 * 7 6 4 30 30 H 0.96996 * 119.99865 * 179.97438 * 11 10 8 31 31 H 1.07992 * 120.14311 * 180.02562 * 20 18 17 32 32 H 1.07990 * 119.82108 * 180.02562 * 21 20 18 33 33 H 1.07997 * 119.66867 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3192 1.0995 0.0000 4 6 1.8731 2.5051 0.0006 5 8 0.6900 2.7677 -0.1031 6 7 2.7762 3.4988 0.1158 7 6 4.1850 3.1831 0.3649 8 6 2.3772 4.8035 0.0000 9 1 1.3419 5.0674 0.1568 10 6 3.3038 5.7874 -0.3251 11 7 4.4803 5.4498 -0.8030 12 14 2.8763 7.5896 -0.0825 13 1 3.2764 8.0137 1.2833 14 1 3.5998 8.4094 -1.0873 15 1 1.4130 7.7782 -0.2506 16 7 3.5969 0.6764 0.0054 17 6 3.6132 -0.6460 0.0035 18 6 4.6742 -1.5788 0.0075 19 17 6.3220 -1.0326 0.0157 20 6 4.3916 -2.9091 0.0045 21 6 3.0527 -3.3371 -0.0021 22 6 2.0494 -2.4362 -0.0059 23 7 2.3164 -1.0953 -0.0033 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 4.6288 3.9642 0.9822 28 1 4.2568 2.2264 0.8824 29 1 4.7174 3.1235 -0.5843 30 1 5.1267 6.1364 -1.0302 31 1 5.1925 -3.6336 0.0080 32 1 2.8264 -4.3930 -0.0041 33 1 1.0247 -2.7772 -0.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155448016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:36 Heat of formation + Delta-G solvation = 47.800877 kcal Electronic energy + Delta-G solvation = -20996.888178 eV Core-core repulsion = 17663.996172 eV Total energy + Delta-G solvation = -3332.892005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.94974 -40.26941 -38.39659 -37.49847 -36.74746 -34.86146 -33.61394 -32.23726 -30.90862 -28.36216 -27.91071 -26.71616 -24.95316 -23.72980 -22.71148 -20.73609 -19.07638 -18.59474 -18.01106 -17.57178 -17.34114 -16.84647 -16.30555 -16.02952 -15.77416 -15.68121 -14.64856 -14.42133 -14.20985 -13.82064 -13.72434 -13.58030 -13.37281 -13.12616 -13.07693 -12.93615 -12.79651 -12.61835 -12.29847 -12.11519 -12.01582 -11.38445 -11.15825 -10.92670 -10.46756 -9.85787 -9.71229 -8.81108 -8.35869 -5.99896 -0.46512 0.12986 0.84007 1.09819 1.39490 1.46495 1.54227 1.62123 2.24551 2.28539 2.54779 2.87450 3.11017 3.15367 3.55131 3.70132 3.86921 4.01189 4.13422 4.23476 4.58311 4.70064 4.79514 4.86286 4.89919 5.00956 5.02781 5.19049 5.36935 5.39122 5.42906 5.52181 5.93342 6.07296 6.40593 6.66885 7.09258 7.39081 7.97493 8.64719 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.005108 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.828705 B = 5480.375017 C = 6754.533756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.003 3.997 3 C -0.005 4.005 4 C 0.500 3.500 5 O -0.617 6.617 6 N -0.437 5.437 7 C 0.138 3.862 8 C -0.350 4.350 9 H 0.084 0.916 10 C -0.005 4.005 11 N -0.891 5.891 12 Si 1.001 2.999 13 H -0.264 1.264 14 H -0.271 1.271 15 H -0.268 1.268 16 N -0.485 5.485 17 C 0.201 3.799 18 C -0.037 4.037 19 Cl -0.041 7.041 20 C -0.061 4.061 21 C -0.122 4.122 22 C 0.053 3.947 23 N -0.360 5.360 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.275 0.725 31 H 0.188 0.812 32 H 0.215 0.785 33 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -22.284 2.399 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C -0.136 4.136 4 C 0.289 3.711 5 O -0.505 6.505 6 N -0.152 5.152 7 C -0.006 4.006 8 C -0.477 4.477 9 H 0.102 0.898 10 C -0.208 4.208 11 N -0.528 5.528 12 Si 0.823 3.177 13 H -0.189 1.189 14 H -0.196 1.196 15 H -0.192 1.192 16 N -0.207 5.207 17 C -0.046 4.046 18 C -0.067 4.067 19 Cl -0.012 7.012 20 C -0.085 4.085 21 C -0.142 4.142 22 C -0.067 4.067 23 N -0.033 5.033 24 H 0.099 0.901 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.205 0.795 32 H 0.232 0.768 33 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.193 -21.405 2.287 21.528 hybrid contribution -0.136 1.066 -0.137 1.083 sum 0.057 -20.339 2.149 20.453 Atomic orbital electron populations 1.20342 0.83291 1.04567 1.03839 1.21404 0.95810 0.83490 1.10662 1.20654 0.89601 0.94333 1.09044 1.17251 0.85842 0.83489 0.84515 1.90509 1.17056 1.83950 1.58982 1.43714 1.08175 1.05329 1.58011 1.21538 0.80702 0.98460 0.99880 1.19820 0.96751 0.82724 1.48441 0.89803 1.26349 0.95173 1.05019 0.94233 1.70181 1.07680 1.35954 1.39008 0.84833 0.78630 0.75586 0.78632 1.18926 1.19619 1.19219 1.71067 1.20665 1.07093 1.21885 1.20888 0.84997 0.90685 1.07983 1.19851 0.84354 0.92309 1.10147 1.98387 1.15035 1.91038 1.96767 1.21606 0.99910 0.91935 0.95095 1.21397 0.89190 1.02325 1.01303 1.22724 1.04735 0.78231 1.01008 1.42705 1.06905 1.07011 1.46660 0.90067 0.87755 0.90608 0.94341 0.90404 0.94546 0.91498 0.79518 0.76842 0.77506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.84 9.67 71.24 0.69 -1.15 16 2 C 0.00 0.12 7.06 41.52 0.29 0.41 16 3 C -0.01 -0.24 6.58 40.80 0.27 0.03 16 4 C 0.50 28.51 7.61 86.68 0.66 29.17 16 5 O -0.62 -36.77 14.47 -4.12 -0.06 -36.83 16 6 N -0.44 -26.20 3.01 -662.57 -2.00 -28.19 16 7 C 0.14 7.63 7.88 127.77 1.01 8.64 16 8 C -0.35 -21.55 9.32 84.08 0.78 -20.76 16 9 H 0.08 5.33 7.36 -2.91 -0.02 5.31 16 10 C -0.01 -0.29 5.05 84.94 0.43 0.14 16 11 N -0.89 -51.77 10.73 21.68 0.23 -51.54 16 12 Si 1.00 44.57 29.58 68.60 2.03 46.60 16 13 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 N -0.49 -21.88 7.87 -183.44 -1.44 -23.32 16 17 C 0.20 7.06 7.62 134.23 1.02 8.08 16 18 C -0.04 -0.99 6.35 22.50 0.14 -0.84 16 19 Cl -0.04 -1.15 28.98 -2.72 -0.08 -1.23 16 20 C -0.06 -0.92 9.84 22.32 0.22 -0.70 16 21 C -0.12 -1.20 9.98 22.06 0.22 -0.98 16 22 C 0.05 0.83 10.82 83.15 0.90 1.73 16 23 N -0.36 -10.56 2.93 -337.79 -0.99 -11.55 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.75 6.57 -2.39 -0.02 2.73 16 27 H 0.04 2.16 7.15 -2.39 -0.02 2.14 16 28 H 0.08 4.06 5.22 -2.39 -0.01 4.05 16 29 H 0.04 2.13 7.49 -2.39 -0.02 2.12 16 30 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.19 1.41 8.06 -2.91 -0.02 1.38 16 32 H 0.21 -0.20 8.06 -2.92 -0.02 -0.22 16 33 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -83.06 299.22 5.48 -77.57 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.16 Total: 4.73 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.63 Total: 23.75 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -4.20 Total: -114.60 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.06 Total: -36.83 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -83.06 5.48 -77.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155448016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.376 kcal (2) G-P(sol) polarization free energy of solvation -83.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds