Wall clock time and date at job start Tue Mar 31 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29319 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48500 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47215 * 300.00088 * 3 2 1 6 6 H 1.48498 * 109.47098 * 60.00045 * 3 2 1 7 7 C 1.46800 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99685 * 179.97438 * 7 2 1 9 9 N 1.32828 * 120.00099 * 0.27573 * 7 2 1 10 10 C 1.38885 * 119.99563 * 174.58286 * 9 7 2 11 11 C 1.40205 * 119.22402 * 5.81194 * 10 9 7 12 12 C 1.36296 * 119.87012 * 179.69425 * 11 10 9 13 13 C 1.40955 * 118.26485 * 0.58054 * 12 11 10 14 14 C 1.41757 * 119.11764 * 359.69098 * 13 12 11 15 15 C 1.40604 * 119.10724 * 179.97438 * 14 13 12 16 16 C 1.36099 * 119.76728 * 0.02562 * 15 14 13 17 17 C 1.39411 * 121.03749 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 119.58213 * 179.97438 * 17 16 15 19 19 C 1.36341 * 120.83693 * 359.97438 * 17 16 15 20 20 N 1.48023 * 120.17708 * 180.02562 * 19 17 16 21 21 O 1.31700 * 120.00140 * 89.99980 * 20 19 17 22 22 O 1.31698 * 119.99555 * 269.99874 * 20 19 17 23 23 N 1.31704 * 119.21491 * 186.08212 * 10 9 7 24 24 H 0.97006 * 119.99795 * 359.97438 * 1 2 3 25 25 H 0.96991 * 119.99709 * 354.57904 * 9 7 2 26 26 H 1.07996 * 120.06380 * 0.02562 * 11 10 9 27 27 H 1.08004 * 120.87036 * 180.26842 * 12 11 10 28 28 H 1.08005 * 120.11793 * 179.97438 * 15 14 13 29 29 H 1.08006 * 119.48296 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 3.6872 1.3463 -0.0006 5 1 1.8685 2.3965 -1.2125 6 1 1.8685 2.3964 1.2125 7 6 2.0271 -1.2714 -0.0006 8 1 3.1071 -1.2714 -0.0010 9 7 1.3630 -2.4217 -0.0066 10 6 2.0532 -3.6214 -0.1207 11 6 3.4551 -3.6087 -0.1049 12 6 4.1458 -4.7790 -0.2097 13 6 3.4140 -5.9762 -0.3445 14 6 1.9976 -5.9209 -0.3594 15 6 1.2679 -7.1151 -0.4944 16 6 1.9268 -8.3005 -0.6077 17 6 3.3199 -8.3528 -0.5928 18 17 4.1216 -9.8855 -0.7394 19 6 4.0606 -7.2153 -0.4646 20 7 5.5390 -7.2877 -0.4512 21 8 6.2128 -7.2025 -1.5795 22 8 6.1805 -7.4373 0.6893 23 7 1.3754 -4.7436 -0.2466 24 1 -0.4850 0.8401 0.0004 25 1 0.3960 -2.4237 0.0687 26 1 3.9866 -2.6740 -0.0045 27 1 5.2257 -4.7885 -0.1950 28 1 0.1881 -7.0919 -0.5073 29 1 1.3617 -9.2151 -0.7108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:05 Heat of formation + Delta-G solvation = 71.450162 kcal Electronic energy + Delta-G solvation = -19965.065815 eV Core-core repulsion = 16497.366225 eV Total energy + Delta-G solvation = -3467.699590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.035 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93788 -40.20894 -39.00411 -37.86928 -36.49189 -35.62095 -34.57559 -34.30569 -31.74334 -30.44717 -27.69500 -26.82370 -25.09237 -23.84505 -22.85434 -20.84688 -19.50950 -19.46849 -19.23498 -18.74455 -17.51844 -17.10042 -16.84573 -16.25629 -15.73421 -15.66472 -15.42031 -14.50874 -14.46771 -14.41291 -13.99641 -13.54725 -13.38223 -12.97560 -12.76464 -12.70524 -12.60911 -12.41849 -12.14237 -12.10889 -11.96546 -11.69087 -11.65976 -10.91192 -10.31722 -9.77944 -9.12170 -9.07358 -5.78953 -1.50588 -0.94233 -0.15101 -0.11804 0.75622 0.83614 1.35166 1.37564 1.53037 1.74013 2.03781 2.55145 2.70514 3.18620 3.42259 3.61922 3.73626 3.76818 3.92945 4.14623 4.22142 4.55335 4.65243 4.77787 4.79002 4.94619 5.00640 5.08552 5.28686 5.36316 5.42151 5.78600 6.06563 6.81851 6.88844 7.55955 8.00344 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.003932 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.915421 B = 7118.870883 C = 7939.782171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.012 3.988 3 Si 1.013 2.987 4 H -0.249 1.249 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.349 4.349 8 H 0.132 0.868 9 N -0.449 5.449 10 C 0.275 3.725 11 C -0.152 4.152 12 C -0.079 4.079 13 C -0.185 4.185 14 C 0.224 3.776 15 C -0.102 4.102 16 C -0.052 4.052 17 C -0.079 4.079 18 Cl -0.055 7.055 19 C 0.063 3.937 20 N -0.025 5.025 21 O -0.153 6.153 22 O -0.152 6.152 23 N -0.610 5.610 24 H 0.308 0.692 25 H 0.401 0.599 26 H 0.146 0.854 27 H 0.124 0.876 28 H 0.168 0.832 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.027 -5.681 -0.476 5.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.206 4.206 3 Si 0.832 3.168 4 H -0.172 1.172 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.482 4.482 8 H 0.149 0.851 9 N -0.041 5.041 10 C 0.028 3.972 11 C -0.175 4.175 12 C -0.103 4.103 13 C -0.194 4.194 14 C 0.087 3.913 15 C -0.124 4.124 16 C -0.072 4.072 17 C -0.110 4.110 18 Cl -0.026 7.026 19 C -0.020 4.020 20 N 0.471 4.529 21 O -0.358 6.358 22 O -0.357 6.357 23 N -0.338 5.338 24 H 0.121 0.879 25 H 0.236 0.764 26 H 0.164 0.836 27 H 0.142 0.858 28 H 0.186 0.814 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.758 -5.066 -0.466 5.143 hybrid contribution 1.341 0.631 0.073 1.484 sum 0.583 -4.435 -0.393 4.490 Atomic orbital electron populations 1.68686 1.09586 1.33377 1.34220 1.28176 0.95940 1.03669 0.92794 0.84562 0.79275 0.73965 0.79005 1.17221 1.19079 1.18896 1.21557 0.94719 0.82303 1.49644 0.85112 1.40118 1.09783 1.02815 1.51420 1.18288 0.88582 0.86477 1.03871 1.21274 0.93362 0.99189 1.03678 1.20860 0.98947 0.91500 0.99043 1.17884 0.95183 0.90543 1.15807 1.18617 0.87170 0.92849 0.92705 1.20971 1.01648 0.88565 1.01211 1.20760 0.88784 1.00280 0.97416 1.19990 0.93801 0.84391 1.12825 1.98374 1.79570 1.28110 1.96537 1.19727 0.74119 0.95782 1.12343 1.50650 1.05481 0.94901 1.01914 1.96249 1.69501 1.53477 1.16568 1.96246 1.72085 1.52514 1.14886 1.67364 1.37363 0.96522 1.32541 0.87900 0.76354 0.83649 0.85777 0.81447 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -34.90 13.09 23.26 0.30 -34.60 15 2 C 0.01 0.46 5.70 87.30 0.50 0.96 15 3 Si 1.01 30.42 29.65 68.60 2.03 32.46 15 4 H -0.25 -7.24 7.11 99.48 0.71 -6.53 15 5 H -0.27 -7.88 7.11 99.48 0.71 -7.17 15 6 H -0.26 -7.75 7.11 99.48 0.71 -7.04 15 7 C -0.35 -14.68 9.78 86.78 0.85 -13.83 15 8 H 0.13 5.14 5.65 -2.91 -0.02 5.13 15 9 N -0.45 -19.64 5.31 -185.02 -0.98 -20.62 15 10 C 0.28 11.92 7.58 133.57 1.01 12.93 15 11 C -0.15 -6.09 9.23 22.29 0.21 -5.88 15 12 C -0.08 -3.10 9.64 22.48 0.22 -2.89 15 13 C -0.18 -7.27 5.74 -21.25 -0.12 -7.39 15 14 C 0.22 8.64 6.60 40.32 0.27 8.91 15 15 C -0.10 -3.04 9.98 22.35 0.22 -2.81 15 16 C -0.05 -1.33 9.71 22.05 0.21 -1.12 15 17 C -0.08 -2.47 6.28 22.11 0.14 -2.33 15 18 Cl -0.05 -1.55 28.35 -2.72 -0.08 -1.63 15 19 C 0.06 2.32 6.23 36.43 0.23 2.55 15 20 N -0.02 -0.95 3.35 -46.32 -0.16 -1.10 15 21 O -0.15 -5.94 19.97 3.51 0.07 -5.87 15 22 O -0.15 -5.89 19.97 3.52 0.07 -5.82 15 23 N -0.61 -25.98 10.36 -186.03 -1.93 -27.90 15 24 H 0.31 11.56 8.26 -92.70 -0.77 10.79 15 25 H 0.40 18.11 8.10 -92.71 -0.75 17.36 15 26 H 0.15 5.29 5.90 -2.91 -0.02 5.27 15 27 H 0.12 4.60 7.57 -2.91 -0.02 4.57 15 28 H 0.17 4.11 8.06 -2.91 -0.02 4.09 15 29 H 0.19 3.17 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -49.94 289.42 3.57 -46.37 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.50 Total: 29.61 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.73 Total: -10.90 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -2.76 Total: -84.23 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.14 Total: -11.69 kcal Atomic # 14 Polarization: 30.42 SS G_CDS: 2.03 Total: 32.46 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -49.94 3.57 -46.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.821 kcal (2) G-P(sol) polarization free energy of solvation -49.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds