Wall clock time and date at job start Tue Mar 31 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31133 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48499 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47001 * 299.99880 * 3 2 1 6 6 H 1.48497 * 109.47051 * 59.99697 * 3 2 1 7 7 C 1.40132 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.32657 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.33991 * 119.99774 * 180.02562 * 9 7 2 11 11 C 1.41736 * 120.16709 * 180.22730 * 10 9 7 12 12 C 1.35496 * 118.94508 * 180.26792 * 11 10 9 13 13 Cl 1.73599 * 120.40649 * 179.76769 * 12 11 10 14 14 N 1.36958 * 119.19298 * 359.48651 * 12 11 10 15 15 H 0.97001 * 119.86309 * 180.25598 * 14 12 11 16 16 C 1.36739 * 120.28216 * 0.27688 * 14 12 11 17 17 C 1.47644 * 119.44124 * 179.97438 * 16 14 12 18 18 C 1.39694 * 120.12602 * 359.72386 * 17 16 14 19 19 C 1.37842 * 119.87451 * 179.74411 * 18 17 16 20 20 C 1.38646 * 120.12532 * 0.51352 * 19 18 17 21 21 F 1.35099 * 119.87853 * 179.74485 * 20 19 18 22 22 C 1.38653 * 120.24849 * 359.76110 * 20 19 18 23 23 C 1.37834 * 120.12876 * 359.97438 * 22 20 19 24 24 N 1.31483 * 121.11602 * 0.02562 * 16 14 12 25 25 H 0.97000 * 119.99709 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.52655 * 0.02859 * 11 10 9 27 27 H 1.08005 * 120.06456 * 359.97438 * 18 17 16 28 28 H 1.07999 * 119.93954 * 180.25309 * 19 18 17 29 29 H 1.08002 * 119.93452 * 179.97438 * 22 20 19 30 30 H 1.07997 * 120.06952 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 14 2.2453 1.6178 0.0000 4 1 3.7053 1.3464 -0.0006 5 1 1.8866 2.3964 -1.2125 6 1 1.8865 2.3965 1.2124 7 6 2.0120 -1.2136 0.0005 8 1 3.0919 -1.2135 0.0010 9 7 1.3487 -2.3624 0.0016 10 6 2.0187 -3.5228 0.0026 11 6 1.3136 -4.7523 -0.0012 12 6 2.0160 -5.9110 0.0055 13 17 1.1911 -7.4385 0.0073 14 7 3.3847 -5.8625 0.0050 15 1 3.8972 -6.6861 0.0060 16 6 4.0320 -4.6581 0.0035 17 6 5.5081 -4.6275 0.0036 18 6 6.2341 -5.8209 0.0109 19 6 7.6121 -5.7863 0.0056 20 6 8.2776 -4.5700 0.0037 21 9 9.6283 -4.5420 0.0037 22 6 7.5622 -3.3824 0.0021 23 6 6.1840 -3.4048 0.0019 24 7 3.3621 -3.5267 0.0031 25 1 -0.4850 0.8401 -0.0004 26 1 0.2337 -4.7654 -0.0053 27 1 5.7168 -6.7689 0.0170 28 1 8.1744 -6.7084 0.0071 29 1 8.0858 -2.4378 0.0011 30 1 5.6277 -2.4792 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:12 Heat of formation + Delta-G solvation = 11.968669 kcal Electronic energy + Delta-G solvation = -19625.808844 eV Core-core repulsion = 16167.902732 eV Total energy + Delta-G solvation = -3457.906112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.043 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.83960 -41.14023 -39.42665 -37.70206 -37.00314 -34.95672 -33.54268 -32.42139 -31.78228 -30.37556 -27.18767 -25.16462 -24.14656 -23.10886 -22.18357 -19.68387 -19.42575 -18.40966 -18.10453 -17.91203 -16.85753 -16.75156 -16.53364 -15.85956 -15.58954 -15.14774 -15.05774 -14.48486 -14.23739 -14.09270 -13.72418 -13.58795 -13.57173 -13.55092 -13.04710 -12.85982 -12.23366 -12.19803 -12.04116 -11.94622 -11.25523 -10.73996 -10.57457 -10.07495 -9.63510 -9.41456 -9.20579 -9.14335 -5.83509 -0.25344 0.32596 0.66881 0.85958 1.11263 1.32792 1.54489 1.57561 2.08384 2.42794 2.66987 2.85831 3.28876 3.56544 3.83315 3.84635 3.97674 4.31360 4.34574 4.55858 4.67700 4.75779 4.85597 4.96362 5.08642 5.16419 5.30348 5.34663 5.57527 5.73746 5.81280 5.91299 6.14303 6.55542 6.94715 7.74170 7.88368 8.38416 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.005951 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.963451 B = 4704.218937 C = 7524.337814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.015 3.985 3 Si 1.017 2.983 4 H -0.250 1.250 5 H -0.249 1.249 6 H -0.249 1.249 7 C -0.198 4.198 8 H 0.075 0.925 9 N -0.367 5.367 10 C -0.042 4.042 11 C -0.112 4.112 12 C 0.104 3.896 13 Cl -0.038 7.038 14 N -0.677 5.677 15 H 0.411 0.589 16 C 0.311 3.689 17 C -0.039 4.039 18 C -0.081 4.081 19 C -0.137 4.137 20 C 0.085 3.915 21 F -0.143 7.143 22 C -0.147 4.147 23 C -0.071 4.071 24 N -0.484 5.484 25 H 0.308 0.692 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.169 0.831 29 H 0.153 0.847 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.770 -6.512 0.013 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.209 4.209 3 Si 0.833 3.167 4 H -0.173 1.173 5 H -0.173 1.173 6 H -0.173 1.173 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.082 5.082 10 C -0.284 4.284 11 C -0.141 4.141 12 C -0.022 4.022 13 Cl -0.010 7.010 14 N -0.315 5.315 15 H 0.249 0.751 16 C 0.044 3.956 17 C -0.042 4.042 18 C -0.101 4.101 19 C -0.156 4.156 20 C 0.065 3.935 21 F -0.121 7.121 22 C -0.166 4.166 23 C -0.092 4.092 24 N -0.202 5.202 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.171 0.829 28 H 0.186 0.814 29 H 0.170 0.830 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.596 -5.483 0.013 11.930 hybrid contribution 0.251 -0.590 -0.002 0.641 sum 10.847 -6.073 0.011 12.431 Atomic orbital electron populations 1.69892 1.09888 1.32949 1.25128 1.27940 0.96049 1.05616 0.91299 0.84614 0.79124 0.72692 0.80298 1.17292 1.17286 1.17280 1.21314 0.94225 0.90026 1.30899 0.90708 1.68310 1.38606 0.98135 1.03175 1.18255 0.85261 0.91578 1.33303 1.20335 0.98934 0.89681 1.05167 1.20021 0.83773 0.86410 1.12014 1.98321 1.76261 1.28970 1.97432 1.40976 1.02127 1.07810 1.80607 0.75075 1.20101 0.91418 0.80911 1.03183 1.18350 0.87626 0.95086 1.03149 1.21118 0.93378 0.97226 0.98427 1.21212 0.94207 0.97653 1.02502 1.17930 0.76666 0.95034 1.03905 1.91480 1.29184 1.97454 1.94022 1.21178 0.93570 0.98518 1.03337 1.21058 0.93415 0.97868 0.96814 1.67980 1.10783 1.26502 1.14949 0.88071 0.86713 0.82856 0.81400 0.82963 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -37.93 13.61 21.89 0.30 -37.63 16 2 C 0.02 0.74 5.53 85.26 0.47 1.21 16 3 Si 1.02 34.67 29.57 68.60 2.03 36.70 16 4 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 5 H -0.25 -7.82 7.11 99.48 0.71 -7.12 16 6 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 7 C -0.20 -10.95 9.56 85.03 0.81 -10.14 16 8 H 0.08 4.12 6.94 -2.91 -0.02 4.10 16 9 N -0.37 -21.89 10.02 -191.43 -1.92 -23.81 16 10 C -0.04 -2.33 7.39 134.75 1.00 -1.34 16 11 C -0.11 -5.47 9.81 22.50 0.22 -5.25 16 12 C 0.10 4.13 7.38 83.26 0.61 4.75 16 13 Cl -0.04 -1.18 29.12 -2.72 -0.08 -1.26 16 14 N -0.68 -24.54 5.33 -177.99 -0.95 -25.49 16 15 H 0.41 11.38 6.78 -92.71 -0.63 10.75 16 16 C 0.31 12.80 7.64 136.36 1.04 13.85 16 17 C -0.04 -1.29 5.87 -20.09 -0.12 -1.40 16 18 C -0.08 -1.92 9.53 22.53 0.21 -1.71 16 19 C -0.14 -2.81 10.01 22.27 0.22 -2.59 16 20 C 0.08 2.00 7.31 22.47 0.16 2.17 16 21 F -0.14 -3.32 17.26 44.97 0.78 -2.54 16 22 C -0.15 -3.80 10.01 22.27 0.22 -3.57 16 23 C -0.07 -2.28 9.57 22.53 0.22 -2.06 16 24 N -0.48 -24.52 8.05 -185.84 -1.50 -26.02 16 25 H 0.31 13.10 8.30 -92.71 -0.77 12.33 16 26 H 0.11 5.58 8.06 -2.91 -0.02 5.56 16 27 H 0.15 2.76 6.35 -2.91 -0.02 2.74 16 28 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.12 4.54 7.52 -2.91 -0.02 4.52 16 Total: -1.00 -66.90 293.93 4.33 -62.57 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.59 Total: 23.57 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 5.08 Total: -6.09 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.06 Total: -112.95 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -66.90 4.33 -62.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.538 kcal (2) G-P(sol) polarization free energy of solvation -66.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds